HHsearch alignment for GI: 254780762 and conserved domain: cd01027
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=91.20 E-value=1.2 Score=25.77 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=54.6
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK 162 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~ 162 (201)
T Consensus 2 ~evIvVEGk~D~~~l~~~~-~~~~ii~t~g~~~~-----------~~~~~~i~~-~~~~VIIlTD~D~~Gekirk~i~~~ 68 (81)
T cd01027 2 GEVIIVEGKNDTESLKKLG-IEAEIIETNGSIIN-----------KETIELIKK-AYRGVIILTDPDRKGEKIRKKLSEY 68 (81)
T ss_pred CEEEEEECCCHHHHHHHHC-CCEEEEEECCCCCC-----------HHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 7699995561899999863-78139998990345-----------999999998-5598599968996707999999998
Q ss_pred HCC
Q ss_conf 201
Q gi|254780762|r 163 LKG 165 (201)
Q Consensus 163 lk~ 165 (201)
T Consensus 69 l~~ 71 (81)
T cd01027 69 LSG 71 (81)
T ss_pred HCC
T ss_conf 225