HHsearch alignment for GI: 254780762 and conserved domain: smart00493
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=99.30 E-value=1.2e-11 Score=99.83 Aligned_cols=75 Identities=32% Similarity=0.383 Sum_probs=62.9
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK 162 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~ 162 (201)
T Consensus 1 ~~liIVEg~~d~~~i~~~~~~~~~~~~~~G~~~~~~-------~i~~l~~~~~-~--~eViiatD~D~eGe~~a~~i~~~ 70 (76)
T smart00493 1 KVLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKE-------IIKLLKRLAK-K--KEVILATDPDREGEAIAWKLAEL 70 (76)
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHH-------HHHHHHHHHC-C--CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979998788899999985699979998215235044-------8999998633-8--97999769894469999999998
Q ss_pred HCCCC
Q ss_conf 20179
Q gi|254780762|r 163 LKGID 167 (201)
Q Consensus 163 lk~~~ 167 (201)
T Consensus 71 l~~~~ 75 (76)
T smart00493 71 LKPAG 75 (76)
T ss_pred HHHCC
T ss_conf 77625