HHsearch alignment of GI: 254780762 and MMDB domain: 1nui_A_138-255

>1nui_A (A:138-255) DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
Probab=94.13  E-value=0.17  Score=31.12  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCCCCCCCEEEEEECHHHHHHHHHHCCEE--EEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHH
Q ss_conf             35555673699983588999997517401--3421012100200026811128899999851578554999946997868
Q gi|254780762|r   76 IDQQRDASVIIVVEDVADLWALERSKAVN--ALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQ  153 (201)
Q Consensus        76 ~d~~Rd~~~lCVVE~~~Di~~IE~t~~y~--G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe  153 (201)
                      .+.-|+.+.++|||-+.|..++...|.-+  ..+...|+..++      +.  +..|.+.  ....++||+++...--|+
T Consensus         7 ~~~~~~~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~------~~--~~~l~~~--~~~~~~iii~~DnD~aG~   76 (118)
T 1nui_A            7 KHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAK------KT--CAANYEY--FDQFEQIILMFDMDEAGR   76 (118)
T ss_dssp             GGGCCCBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHH------HH--HHHTHHH--HTTBSCEEEECCSSHHHH
T ss_pred             EEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHH------HH--HHHHHHH--HCCCCEEEEECCCCHHHH
T ss_conf             2104687669997881369999998426886543676301214------67--7888887--436775999778998999


Q ss_pred             HHHHHHHHHHCCCCCEEE
Q ss_conf             999999998201798088
Q gi|254780762|r  154 TTAHYIMDKLKGIDVKIT  171 (201)
Q Consensus       154 ~Ta~yi~~~lk~~~ikit  171 (201)
                      .-+..+.+.+...++.+.
T Consensus        77 ~~~~~~~~~l~~~~~~~~   94 (118)
T 1nui_A           77 KAVEEAAQVLPAGKVRVA   94 (118)
T ss_dssp             HHHHHHHHHSCTTTEEEC
T ss_pred             HHHHHHHHHCCCCCEEEE
T ss_conf             999999987577879995