HHsearch alignment of GI: 254780762 and MMDB domain: 1nui_A_138-255
>1nui_A (A:138-255) DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
Probab=94.13 E-value=0.17 Score=31.12 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCCCCCCCEEEEEECHHHHHHHHHHCCEE--EEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHH
Q ss_conf 35555673699983588999997517401--3421012100200026811128899999851578554999946997868
Q gi|254780762|r 76 IDQQRDASVIIVVEDVADLWALERSKAVN--ALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQ 153 (201)
Q Consensus 76 ~d~~Rd~~~lCVVE~~~Di~~IE~t~~y~--G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe 153 (201)
.+.-|+.+.++|||-+.|..++...|.-+ ..+...|+..++ +. +..|.+. ....++||+++...--|+
T Consensus 7 ~~~~~~~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~------~~--~~~l~~~--~~~~~~iii~~DnD~aG~ 76 (118)
T 1nui_A 7 KHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAK------KT--CAANYEY--FDQFEQIILMFDMDEAGR 76 (118)
T ss_dssp GGGCCCBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHH------HH--HHHTHHH--HTTBSCEEEECCSSHHHH
T ss_pred EEECCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHH------HH--HHHHHHH--HCCCCEEEEECCCCHHHH
T ss_conf 2104687669997881369999998426886543676301214------67--7888887--436775999778998999
Q ss_pred HHHHHHHHHHCCCCCEEE
Q ss_conf 999999998201798088
Q gi|254780762|r 154 TTAHYIMDKLKGIDVKIT 171 (201)
Q Consensus 154 ~Ta~yi~~~lk~~~ikit 171 (201)
.-+..+.+.+...++.+.
T Consensus 77 ~~~~~~~~~l~~~~~~~~ 94 (118)
T 1nui_A 77 KAVEEAAQVLPAGKVRVA 94 (118)
T ss_dssp HHHHHHHHHSCTTTEEEC
T ss_pred HHHHHHHHHCCCCCEEEE
T ss_conf 999999987577879995