HHsearch alignment of GI: 254780763 and MMDB domain: 3f42_A_
>3f42_A (A:) Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=99.94 E-value=3.1e-26 Score=188.05 Aligned_cols=98 Identities=22% Similarity=0.335 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|+||++||+|||+||++++++|++|++.+|+|+|++|+|+||+||+++|++|+|||+++ +|+++|||+|++|||+|++
T Consensus 2 ~~n~~~mlkqaq~~q~~~~~~q~el~~~~~~g~s~~g~V~V~~~G~~~i~~i~Id~~~l--~d~e~Ledli~~A~N~A~~ 79 (99)
T 3f42_A 2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL--EDKEAXQIYLXSALNDGYK 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999999984739999977988999998795499999897890--8899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999974489989999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~ 103 (107)
++++.++++|+++|||| |||
T Consensus 80 ka~~~~~~~m~~~~g~l---pG~ 99 (99)
T 3f42_A 80 AVEENRKNLAFNXLGNF---AKL 99 (99)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHCCC---CCC
T ss_conf 99999999999986575---799