Query gi|254780763|ref|YP_003065176.1| hypothetical protein CLIBASIA_03260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 107 out of 1265
Neff 6.1
Searched_HMMs 23785
Date Mon May 30 13:27:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780763.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j8b_A YBAB; hypothetical prot 100.0 7.3E-33 3.1E-37 229.1 11.1 106 1-107 7-112 (112)
2 1ybx_A Conserved hypothetical 100.0 1.7E-30 7.3E-35 214.1 13.4 102 2-103 41-142 (143)
3 3f42_A Protein HP0035; helicob 99.9 2.1E-25 8.7E-30 181.8 13.7 96 1-98 2-97 (99)
4 1j8b_A YBAB; hypothetical prot 85.6 0.44 1.9E-05 27.5 2.8 89 5-101 18-112 (112)
5 1ybx_A Conserved hypothetical 81.2 0.39 1.7E-05 27.8 1.0 92 9-106 41-140 (143)
6 3brc_A Conserved protein of un 50.8 11 0.00047 18.6 3.2 48 33-82 105-152 (156)
7 2npb_A Selenoprotein W; struct 44.2 3.9 0.00016 21.5 0.0 48 35-86 44-91 (96)
8 1h2i_A RAD52, DNA repair prote 39.9 22 0.00094 16.7 4.1 22 61-82 133-154 (209)
9 2bv4_A Lectin CV-IIL; mannose; 36.2 25 0.0011 16.3 4.0 29 29-57 52-80 (113)
10 2chh_A Protein RSC3288; lectin 34.7 27 0.0011 16.2 4.0 29 29-57 53-81 (114)
11 1uzv_A Pseudomonas aeruginosa 34.5 27 0.0011 16.2 3.0 26 32-57 55-81 (114)
12 1vqz_A Lipoate-protein ligase, 28.8 34 0.0014 15.6 4.8 45 28-72 260-305 (341)
13 1lr0_A TOLA protein; domain-sw 28.0 35 0.0015 15.5 4.8 37 38-78 55-91 (129)
14 2kzx_A Uncharacterized protein 21.6 46 0.0019 14.7 3.4 29 26-55 2-37 (131)
15 2ve7_C Kinetochore protein NUF 21.4 46 0.0019 14.7 2.3 44 17-60 191-234 (250)
16 2wra_A Lectin, BCLA; sugar bin 20.9 47 0.002 14.6 4.0 26 29-54 59-84 (128)
No 1
>1j8b_A YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20} SCOP: d.222.1.1 PDB: 1pug_A
Probab=100.00 E-value=7.3e-33 Score=229.13 Aligned_cols=106 Identities=42% Similarity=0.734 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|+||++||+|||+||++++++|++|++++|+|+|++|+|+||+||+++|++|+|||++++ +|+++|+|+|++|||+|++
T Consensus 7 ~~nm~~mlkqaq~mq~~~~~~q~eL~~~~v~~~s~~g~V~V~~~G~~~v~~i~Id~~~l~-~d~e~LedlI~~A~N~A~~ 85 (112)
T 1j8b_A 7 KGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVR 85 (112)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_conf 778999999999999999999999856299999879769999976947999998888841-7899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999744899899999998
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
++++.++++|+++|||+++||||+|||
T Consensus 86 ka~~~~~~~m~~ltggl~lppg~~~p~ 112 (112)
T 1j8b_A 86 RAEELQKEKMASVTAGMPLPPGMKFPF 112 (112)
T ss_dssp HHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999999857999998999997
No 2
>1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=99.97 E-value=1.7e-30 Score=214.06 Aligned_cols=102 Identities=35% Similarity=0.575 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 21799999999999999999999853089999769849999964830746886478829100689999999999999999
Q gi|254780763|r 2 SNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKK 81 (107)
Q Consensus 2 ~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k 81 (107)
+||++||+|||+||++|+++|++|++.+|+|+|++|+|+||+||+++|++|+|||++++++|+|+|||+|++|||+|+++
T Consensus 41 Gnm~~mmkqAq~mQ~km~~~QeeL~~~~veg~sg~GlVkVtvnG~~~V~~V~Idpell~~ed~e~LedlI~aAiNdA~~k 120 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK 120 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 47999999999999999999999845699999889879999978916999997889849656999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999974489989999
Q gi|254780763|r 82 IEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 82 ~~~~~~~~m~~~tggl~lp~g~ 103 (107)
+++..+++|+++||||+.||||
T Consensus 121 a~~~~~e~m~~ltGgl~~~PGl 142 (143)
T 1ybx_A 121 ADEMVTAEISKITGGLGGIPGL 142 (143)
T ss_dssp HHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999986799999988
No 3
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=99.93 E-value=2.1e-25 Score=181.85 Aligned_cols=96 Identities=23% Similarity=0.378 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|.||++||+|+|+||++|+++|++|++.+|+|+|++|+|+|++||+++|++|+|||+++ +|+++|||+|++|||+|++
T Consensus 2 ~md~~~ml~~~q~mq~~m~~~q~eL~~~~v~~~s~~g~V~V~~~G~~~v~~i~Id~~~l--ed~e~LedlI~~A~n~A~~ 79 (99)
T 3f42_A 2 HMDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMSALNDGYK 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999999973738999988976999997683399999896780--8999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999744899
Q gi|254780763|r 81 KIEDLVATKTQEITEGLP 98 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~ 98 (107)
++++..+++|+++||||+
T Consensus 80 k~~~~~~~~m~~~tgg~g 97 (99)
T 3f42_A 80 AVEENRKNLAFNMLGNFA 97 (99)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999856867
No 4
>1j8b_A YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20} SCOP: d.222.1.1 PDB: 1pug_A
Probab=85.60 E-value=0.44 Score=27.50 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998----5308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 5 MKMVGQFKEIQGKMEKMKESI----TSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 5 ~~llkqaq~mq~~m~~~q~eL----~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
.+|-++++++|+++....=+- ...+|+.+..+..+.|.++-. +.+ -|.+.| .+.+-..+-.|+..|-+
T Consensus 18 q~mq~~~~~~q~eL~~~~v~~~s~~g~V~V~~~G~~~v~~i~Id~~--~l~--~d~e~L----edlI~~A~N~A~~ka~~ 89 (112)
T 1j8b_A 18 QQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPS--LME--DDKEML----EDLIAAAFNDAVRRAEE 89 (112)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGG--GGG--SCHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHH--HHC--CCHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 9999999999999856299999879769999976947999998888--841--789999----99999999999999999
Q ss_pred HHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 9999999999997--44899899
Q gi|254780763|r 81 KIEDLVATKTQEI--TEGLPIPP 101 (107)
Q Consensus 81 k~~~~~~~~m~~~--tggl~lp~ 101 (107)
..++.+..-.+.+ ..||++|+
T Consensus 90 ~~~~~m~~ltggl~lppg~~~p~ 112 (112)
T 1j8b_A 90 LQKEKMASVTAGMPLPPGMKFPF 112 (112)
T ss_dssp HHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999857999998999997
No 5
>1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=81.20 E-value=0.39 Score=27.80 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHH--HCC-CCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 9999999999999999853089999769849999964830746886478--829-1006899----99999999999999
Q gi|254780763|r 9 GQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRS--LLF-EDNVEIL----EDLIIAAHSDAHKK 81 (107)
Q Consensus 9 kqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~--~l~-~~d~e~L----edli~~A~N~A~~k 81 (107)
...++|-++++++|+++++..-+-.. .+|+.....-.+.|+++-. +++ .-|++.| .+.|-..+-.|+.+
T Consensus 41 Gnm~~mmkqAq~mQ~km~~~QeeL~~----~~veg~sg~GlVkVtvnG~~~V~~V~Idpell~~ed~e~LedlI~aAiNd 116 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKE----KTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNE 116 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCEEEEEEEECHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 47999999999999999999999845----69999988987999997891699999788984965699999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CCC
Q ss_conf 9999999999974489989999-999
Q gi|254780763|r 82 IEDLVATKTQEITEGLPIPPGL-KFP 106 (107)
Q Consensus 82 ~~~~~~~~m~~~tggl~lp~g~-~lP 106 (107)
+-+.+++...+..+.+ .+|| ++|
T Consensus 117 A~~ka~~~~~e~m~~l--tGgl~~~P 140 (143)
T 1ybx_A 117 ALRKADEMVTAEISKI--TGGLGGIP 140 (143)
T ss_dssp HHHHHHHHHHHHHHHH--C-------
T ss_pred HHHHHHHHHHHHHHHH--HCCCCCCC
T ss_conf 9999999999999998--67999999
No 6
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str}
Probab=50.84 E-value=11 Score=18.56 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=39.0
Q ss_pred EECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97698499999648307468864788291006899999999999999999
Q gi|254780763|r 33 NAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 33 ~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~ 82 (107)
--|.|-.-|.+++++.|+.-..+|+-+= .++-+|+.+..-.++|++++
T Consensus 105 vPGSGSmLvimD~kgRiLTaslSPs~vi--Hk~~ie~~v~~E~~eAL~Ri 152 (156)
T 3brc_A 105 VPGSGSLLVIMDSRGRLLSAAMSPPHVI--HSMEVREAVRSEMTHALERI 152 (156)
T ss_dssp STTSCEEEEEEETTSCEEEEEEECCTTT--SCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCEEEECCCCHHHH--HHCCHHHHHHHHHHHHHHHH
T ss_conf 8987637999838876775137930654--21448999999999999983
No 7
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=44.23 E-value=3.9 Score=21.47 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=30.1
Q ss_pred CCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6984999996483074688647882910068999999999999999999999
Q gi|254780763|r 35 GGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLV 86 (107)
Q Consensus 35 g~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~~~~ 86 (107)
.+|...|++||.- |=|=. ...-+ | |.+.+-+.|+.++.+|+++.+...
T Consensus 44 ~~G~FeV~vdg~l-I~sKk-~~ggF-P-d~ke~~~~I~~~I~~~l~k~~~~~ 91 (96)
T 2npb_A 44 VTGFFEVTVAGKL-VHSKK-RGDGY-V-DTESKFRKLVTAIKAALAQCQLEH 91 (96)
T ss_dssp CCSCCEEEETTEE-EEETT-TTCCS-S-CSHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEEEECCEE-EEEEE-CCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9748999989999-89851-46899-9-869999999999999986402542
No 8
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=39.87 E-value=22 Score=16.69 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1006899999999999999999
Q gi|254780763|r 61 EDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 61 ~~d~e~Ledli~~A~N~A~~k~ 82 (107)
+...+.++....+|+.||++++
T Consensus 133 ~~Kg~a~ekAkKeAvTDALKRA 154 (209)
T 1h2i_A 133 KSKALSLEKARKEAVTDGLKRA 154 (209)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5277889998999999999999
No 9
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=36.22 E-value=25 Score=16.33 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=22.9
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEECHH
Q ss_conf 89999769849999964830746886478
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKIDRS 57 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id~~ 57 (107)
+..-.||.|.|+|.+.++++...+.-..-
T Consensus 52 t~~lnSG~GkVrieV~~nGKps~l~~~~~ 80 (113)
T 2bv4_A 52 TKVINSGSGNVRVQITANGRQSDLVSSQL 80 (113)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEECCC
T ss_conf 19996699709999984894353200201
No 10
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=34.70 E-value=27 Score=16.17 Aligned_cols=29 Identities=10% Similarity=0.262 Sum_probs=22.5
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEECHH
Q ss_conf 89999769849999964830746886478
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKIDRS 57 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id~~ 57 (107)
+..-.||.|.|+|.+.++++...+.-...
T Consensus 53 t~~l~Sg~GkVriev~~nGkps~l~s~q~ 81 (114)
T 2chh_A 53 SQVLNSGSGAIKIQVSVNGKPSDLVSNQT 81 (114)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCCCCEEEEC
T ss_conf 39996699829999985994244100000
No 11
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=34.49 E-value=27 Score=16.20 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEC-CCEEEEEEECCCCEEEEEECHH
Q ss_conf 9976-9849999964830746886478
Q gi|254780763|r 32 GNAG-GGMVSVRINGKNMLTGVKIDRS 57 (107)
Q Consensus 32 g~sg-~g~V~V~~~G~~~i~~i~Id~~ 57 (107)
-.|| +|.|+|.+.++++..++.-..-
T Consensus 55 lnSG~~GkVrieV~~nGKps~l~s~q~ 81 (114)
T 1uzv_A 55 LNSGSSGKVQVQVSVNGRPSDLVSAQV 81 (114)
T ss_dssp EECTTTCEEEEEEEETTEECEEEEEEE
T ss_pred EECCCCCEEEEEEEECCCCCCCEECEE
T ss_conf 724898659999983894353311100
No 12
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=28.82 E-value=34 Score=15.56 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=34.8
Q ss_pred EEEEEEECCCEEEEEEE-CCCCEEEEEECHHHCCCCHHHHHHHHHH
Q ss_conf 08999976984999996-4830746886478829100689999999
Q gi|254780763|r 28 LEAEGNAGGGMVSVRIN-GKNMLTGVKIDRSLLFEDNVEILEDLII 72 (107)
Q Consensus 28 ~~v~g~sg~g~V~V~~~-G~~~i~~i~Id~~~l~~~d~e~Ledli~ 72 (107)
.+.+....+|.|.|.++ -++.|.+|.|.-+++.+.+.+.|++.+.
T Consensus 260 ~~~~~~~~~G~v~v~~~v~~g~I~~i~i~gDf~~~~~~~~l~~~L~ 305 (341)
T 1vqz_A 260 VRRGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLR 305 (341)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHT
T ss_pred EEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 5675432685699999994799999999877887345999999867
No 13
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=27.99 E-value=35 Score=15.46 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=24.3
Q ss_pred EEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 49999964830746886478829100689999999999999
Q gi|254780763|r 38 MVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDA 78 (107)
Q Consensus 38 ~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A 78 (107)
.|+|+++.+|.|.++.|..+ ..+ ..+-+..+.|+..|
T Consensus 55 ~v~i~l~~dG~v~~~~i~~s---SG~-~~~d~aa~~Av~ra 91 (129)
T 1lr0_A 55 EVLIEMLPDGTITNASVSRS---SGD-KPFDSSAVAAVRNV 91 (129)
T ss_dssp EEEEEECTTSBEEEEEEEEC---CSC-HHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEEECCC---CCC-HHHHHHHHHHHHHH
T ss_conf 99999989998987551027---787-58999999999985
No 14
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=21.62 E-value=46 Score=14.71 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=20.7
Q ss_pred HHEEEEEEECC-------CEEEEEEECCCCEEEEEEC
Q ss_conf 53089999769-------8499999648307468864
Q gi|254780763|r 26 TSLEAEGNAGG-------GMVSVRINGKNMLTGVKID 55 (107)
Q Consensus 26 ~~~~v~g~sg~-------g~V~V~~~G~~~i~~i~Id 55 (107)
+.-+++|++.+ .-|+||+. +++|++|.++
T Consensus 2 kDGtY~~~~~~~d~~g~~~~V~vtV~-dgkIt~v~~~ 37 (131)
T 2kzx_A 2 KDGTYYAEADDFDESGWKDTVTIEVK-NGKIVSVDWN 37 (131)
T ss_dssp CSSEEEEECSSCCTTSEEEEEEEEEE-TTEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEE-CCEEEEEEEE
T ss_conf 98389999982378885699999998-9999999999
No 15
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens}
Probab=21.38 E-value=46 Score=14.71 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCC
Q ss_conf 99999999853089999769849999964830746886478829
Q gi|254780763|r 17 KMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60 (107)
Q Consensus 17 ~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~ 60 (107)
...+...++.+++.+-++..+.|+-+..|...++.|.+|.+-.+
T Consensus 191 ~v~~L~~~Is~l~~~y~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (250)
T 2ve7_C 191 YVAQLYHQVSKIEWEYECEPGMVKGIHHGPSVAQPIHLDSTQLS 234 (250)
T ss_dssp HHHHHHHHHHCCEECSCCTTTCEEEEC------CEEEECSTTSC
T ss_pred HHHHHHHHHHHHEEECCCCCCHHCCEECCCCCCCCCCCCCCCCC
T ss_conf 99999999876022045786821343436655750105776565
No 16
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=20.88 E-value=47 Score=14.61 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.7
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEE
Q ss_conf 89999769849999964830746886
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKI 54 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~I 54 (107)
+-.-.||.|.|.|.+.++++...+.-
T Consensus 59 t~~lnSG~GkVrI~V~~nGkps~l~s 84 (128)
T 2wra_A 59 EATLNSGNGKIRFEVSVNGKPSATDA 84 (128)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEE
T ss_conf 08887599709999984895142000
Done!