RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780763|ref|YP_003065176.1| hypothetical protein
CLIBASIA_03260 [Candidatus Liberibacter asiaticus str. psy62]
(107 letters)
>1ybx_A Conserved hypothetical protein; structural genomics, PSI,
protein structure initiative, southeast collaboratory
for structural genomics; HET: MSE; 1.80A {Clostridium
thermocellum} (A:)
Length = 143
Score = 100 bits (251), Expect = 7e-23
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
NI +V Q ++ Q E+++E + E +AGGG V+V G+ + + I ++
Sbjct: 40 GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVD 99
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
D+VE L+DLI+AA ++A +K ++ V + +IT GL PGL
Sbjct: 100 PDDVEXLQDLILAAVNEALRKADEXVTAEISKITGGLGGIPGL 142
>1j8b_A YBAB; hypothetical protein, structural genomics, structure 2
function project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae rd KW20} (A:)
Length = 112
Score = 95.2 bits (237), Expect = 3e-21
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ + Q ++ Q K +K +E I LE G +G G+V + ING + + ID SL
Sbjct: 7 KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE 66
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
+D E LEDLI AA +DA ++ E+L K +T G P+PPG KFPF
Sbjct: 67 DD-KEXLEDLIAAAFNDAVRRAEELQKEKXASVTAGXPLPPGXKFPF 112
>3f42_A Protein HP0035; helicobacter pylori unknown-function,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.78A {Helicobacter pylori} (A:)
Length = 99
Score = 91.6 bits (228), Expect = 4e-20
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ ++ G + + +++E +GGG VSV NG L ++ID SLL
Sbjct: 2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL- 60
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
++ E + + +A +D +K +E+
Sbjct: 61 -EDKEAXQIYLXSALNDGYKAVEENRKNLAFNXLGNFA 97
>1f07_A Coenzyme F420-dependent N5,N10-
methylenetetrahydromethanopterin reductase; (beta,
alpha)8 barrel, TIM barrel; HET: MPO; 2.00A
{Methanothermobacterthermautotrophicus}
(A:1-205,A:281-321)
Length = 246
Score = 32.8 bits (74), Expect = 0.019
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 68 EDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPP 101
D+ +AA+++ KIE L + G PI P
Sbjct: 197 ADIDVAAYTEFIPKIEALGEMGVTQYVAGSPIGP 230
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural
genomics, PSI, protein structure initiative, midwest
center for structural genomics; 2.05A {Aquifex aeolicus}
(A:)
Length = 401
Score = 26.7 bits (59), Expect = 1.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRING 45
K E+ K I ++ +G + GG+ V
Sbjct: 209 KDEEFKTYIDEVKEKGESLGGVFEVFALN 237
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase;
HET: FMN; 1.95A {Helicobacter pylori} (A:146-299)
Length = 154
Score = 26.7 bits (59), Expect = 1.3
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVE 65
+ E K +I + ++ GG+ +R + I ++
Sbjct: 37 QEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLD 85
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein,
shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} (A:155-315)
Length = 161
Score = 26.3 bits (58), Expect = 1.6
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRING 45
+ +++K+ I ++ +G+ GG+V + G
Sbjct: 42 REQEIKDYIDQIKRDGDTIGGVVETVVGG 70
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM
barrel, hexamer; 1.90A {Arthrobacter SP} (A:728-1024)
Length = 297
Score = 25.8 bits (56), Expect = 2.0
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 36 GGMVSVRINGKNMLTGVKIDRSLLFEDN 63
++ ++G +++ DN
Sbjct: 18 FDAGTLVSLAGQPVSGPRLELWRAPTDN 45
>1y69_8 Ribosome recycling factor; RRF; 3.33A {Deinococcus
radiodurans} (8:)
Length = 113
Score = 25.8 bits (57), Expect = 2.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED+ +D + A KKIE +A K E+ +
Sbjct: 78 EDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 112
>1sq1_A Chorismate synthase; structural genomics, bifunctional
alpha/beta tetrameric protein, PSI, protein structure
initiative; 2.80A {Campylobacter jejuni} (A:145-309)
Length = 165
Score = 25.9 bits (57), Expect = 2.1
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL 58
K I + ++ G V +++G + G + L
Sbjct: 41 LESDFKNEILNARNSKDSVGAAVFTKVSGXLIGLGEVLYDKL 82
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} (A:148-329)
Length = 182
Score = 25.6 bits (56), Expect = 2.3
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL 58
M + I ++ GG+V+ + G L
Sbjct: 50 VAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKL 91
>2o11_A Chorismate synthase; shikimate pathway, lyase; 1.65A
{Mycobacterium tuberculosis H37RV} PDB: 2o12_A* 2qhf_A
2g85_A 1ztb_A (A:160-372)
Length = 213
Score = 25.5 bits (56), Expect = 2.6
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 KMEKMKESITSLEAEGNAGGGMVSVRING 45
M I + + +G+ GG+V G
Sbjct: 42 AEADMIAQIEAAKKDGDTLGGVVEAVALG 70
>1eh1_A Ribosome recycling factor; translation, hinge variability;
2.60A {Thermus thermophilus} (A:1-35,A:106-185)
Length = 115
Score = 25.5 bits (56), Expect = 2.8
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 12 KEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLI 71
+ ++ E+ + +I ++R + L + + L ED + E I
Sbjct: 46 RAVRQYAEEGRVAI-------------RNIRREALDKLKKLAKELHLS-EDETKRAEAEI 91
Query: 72 IAAHSDAHKKIEDLVATKTQEI 93
+ K + L K QEI
Sbjct: 92 QKITDEFIAKADQLAEKKEQEI 113
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator
activated receptor gamma; complex
(thiazolidinedione/receptor), ligand-binding domain;
HET: BRL; 2.30A {Homo sapiens} (C:)
Length = 88
Score = 25.2 bits (55), Expect = 3.1
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 76 SDAHKKIEDLVATKTQEITEGLPIPPGLK 104
S K+ L+ T ++ I K
Sbjct: 5 SQTSHKLVQLLTTTAEQQLRHADIDTSCK 33
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative
II (PSI-II), glycosyl hydrolase family 2, jelly-roll
fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482}
PDB: 3dec_A (A:729-1010)
Length = 282
Score = 25.3 bits (55), Expect = 3.3
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 36 GGMVSVRINGKNMLTG 51
G + S+ ++GK +L
Sbjct: 17 GALSSLTLDGKELLAA 32
>1wqg_A Ribosome recycling factor; translation factor, triple-helix
bundle, protein synthesis; 2.15A {Mycobacterium
tuberculosis} (A:1-32,A:105-185)
Length = 113
Score = 25.0 bits (55), Expect = 3.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED V E + +I++LV K E+ E
Sbjct: 78 EDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 112
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex
aeolicus} (A:1-36,A:107-184)
Length = 114
Score = 25.1 bits (55), Expect = 3.5
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED + + + +I L+ K +EI
Sbjct: 79 EDEKKRALERLQKLTDKYIDEINKLMEAKEKEIMS 113
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
parahaemolyticus} (A:1-32,A:105-185)
Length = 113
Score = 25.0 bits (55), Expect = 3.7
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 12 KEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLI 71
K ++G+ E + ++ + +R + N L + D+ + ED ++ I
Sbjct: 43 KIVRGEAEGGRVAVRN-------------IRRDANNDLKALLKDKEIS-EDEDRKAQEEI 88
Query: 72 IAAHSDAHKKIEDLVATKTQEITE 95
A KKI++++A K +E+ E
Sbjct: 89 QKLTDVAVKKIDEVLAAKEKELME 112
>1dd5_A Ribosome recycling factor; three-helix bundle,
beta-alpha-beta sandwich; 2.55A {Thermotoga maritima}
(A:1-33,A:105-185)
Length = 114
Score = 25.1 bits (55), Expect = 3.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED+ + LE+ I + +K++++ K +EI E
Sbjct: 79 EDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 113
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia
coli} (A:1-32,A:105-185)
Length = 113
Score = 25.0 bits (55), Expect = 4.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED+ +D + A KKIE +A K E+ +
Sbjct: 78 EDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 112
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
(A:1-54,A:297-447)
Length = 205
Score = 24.0 bits (52), Expect = 6.8
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLK 104
+ + D+I A + + + + P+ GL+
Sbjct: 155 DTEFTEVADIIATALATGSSVDVSALKDRATRLARAFPLYDGLE 198
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} (A:1-88)
Length = 88
Score = 24.0 bits (52), Expect = 7.7
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 52 VKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82
+K+ R + +D + LE + + +D K++
Sbjct: 8 LKVRRDHIIDDALVRLEMIAMENPADLKKQL 38
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin-
pyrophosphokinase); HET: ROI; 2.02A {Haemophilus
influenzae} (A:)
Length = 160
Score = 23.7 bits (51), Expect = 8.7
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 54 IDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPG 102
+D +L N I + + H D H + + V EI L +P
Sbjct: 94 LDLDILLYGNEIIQNERLTIPHYDMHNR--EFVIVPLFEIASDLVLPNS 140
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.134 0.363
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 760,279
Number of extensions: 29902
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 29
Length of query: 107
Length of database: 4,956,049
Length adjustment: 63
Effective length of query: 44
Effective length of database: 2,826,334
Effective search space: 124358696
Effective search space used: 124358696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)