Query         gi|254780764|ref|YP_003065177.1| hypothetical protein CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 194
No_of_seqs    163 out of 924
Neff          7.7 
Searched_HMMs 39220
Date          Sun May 29 18:49:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780764.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG3807 Uncharacterized protei 100.0 4.1E-41 1.4E-45  270.8  11.6  151   42-194    21-171 (171)
  2 COG3103 SH3 domain protein [Si  99.7 1.1E-18 2.8E-23  133.4   3.0  121   56-184    26-149 (205)
  3 pfam06347 SH3_4 Bacterial SH3   99.5 8.5E-14 2.2E-18  103.4   7.1   54  133-186     2-55  (55)
  4 pfam08239 SH3_3 Bacterial SH3   99.4 1.4E-12 3.6E-17   95.9   7.3   50  135-184     2-51  (52)
  5 smart00287 SH3b Bacterial SH3   99.2 7.8E-11   2E-15   85.3   6.8   58   58-116     4-62  (63)
  6 PRK10884 putative signal trans  99.2 1.8E-10 4.6E-15   83.1   8.2   63   56-120    26-90  (206)
  7 pfam08239 SH3_3 Bacterial SH3   99.1 3.3E-10 8.3E-15   81.5   6.2   52   63-116     1-52  (52)
  8 smart00287 SH3b Bacterial SH3   99.0 6.1E-10 1.6E-14   79.8   6.8   57  128-184     3-61  (63)
  9 pfam06347 SH3_4 Bacterial SH3   99.0 6.7E-10 1.7E-14   79.5   6.1   55   61-117     1-55  (55)
 10 COG3103 SH3 domain protein [Si  98.7 6.7E-08 1.7E-12   67.3   6.5   58  127-184    25-85  (205)
 11 PRK10884 putative signal trans  98.6 1.4E-07 3.7E-12   65.2   6.2   57  129-185    27-86  (206)
 12 COG4991 Uncharacterized protei  98.6 3.4E-08 8.7E-13   69.1   2.7   54   62-117    39-94  (155)
 13 COG4991 Uncharacterized protei  98.5   2E-07 5.2E-12   64.3   4.7   55  130-184    36-92  (155)
 14 PRK13545 tagH teichoic acids e  97.4 0.00044 1.1E-08   43.9   6.3   59   59-118   350-414 (549)
 15 KOG4226 consensus               97.4  0.0004   1E-08   44.2   5.4  103   80-185   125-247 (379)
 16 COG3807 Uncharacterized protei  97.3 0.00012   3E-09   47.4   2.4   55  133-187    41-97  (171)
 17 PRK13545 tagH teichoic acids e  97.0  0.0015 3.8E-08   40.6   5.0   65  128-192   348-419 (549)
 18 pfam08460 SH3_5 Bacterial SH3   96.4   0.013 3.3E-07   34.9   6.5   48  133-180    12-64  (65)
 19 KOG4226 consensus               95.9   0.012 3.2E-07   35.0   4.2  104   83-186    24-161 (379)
 20 smart00326 SH3 Src homology 3   95.5   0.028 7.2E-07   32.8   4.9   36  149-184    18-55  (58)
 21 pfam07653 SH3_2 Variant SH3 do  95.4   0.023 5.8E-07   33.4   4.2   35  150-184    16-51  (53)
 22 cd00174 SH3 Src homology 3 dom  94.9   0.054 1.4E-06   31.1   5.0   35  150-184    16-52  (54)
 23 KOG1428 consensus               93.5    0.53 1.3E-05   25.0   8.1  118   56-174  2167-2334(3738)
 24 KOG4278 consensus               93.1   0.062 1.6E-06   30.7   2.3   44   83-127   110-155 (1157)
 25 PRK13914 invasion associated s  92.0    0.45 1.1E-05   25.5   5.4   57   60-117    82-139 (475)
 26 pfam08460 SH3_5 Bacterial SH3   91.6    0.49 1.3E-05   25.2   5.3   47   63-110    13-63  (65)
 27 KOG0515 consensus               91.5   0.062 1.6E-06   30.7   0.6   39  152-191   702-744 (752)
 28 smart00326 SH3 Src homology 3   91.1    0.26 6.7E-06   26.9   3.5   36   80-116    20-56  (58)
 29 KOG4225 consensus               88.9    0.64 1.6E-05   24.5   4.0  102   80-183   248-357 (489)
 30 KOG1029 consensus               84.7     1.5 3.9E-05   22.2   4.1   34  152-185   832-865 (1118)
 31 KOG2070 consensus               78.8     1.2 3.1E-05   22.8   1.7   32   84-116    38-70  (661)
 32 pfam00018 SH3_1 SH3 domain. SH  76.9     3.3 8.3E-05   20.2   3.5   29  152-180    16-46  (47)
 33 KOG4792 consensus               71.6     6.9 0.00017   18.2   4.2  119   64-184   124-281 (293)
 34 TIGR02162 torC trimethylamine-  70.8     2.4 6.1E-05   21.0   1.6  111   58-186   212-323 (394)
 35 KOG2996 consensus               69.8     3.2 8.2E-05   20.2   2.1   35  150-184   822-859 (865)
 36 KOG3557 consensus               63.4     2.7 6.8E-05   20.7   0.7   38  151-188   518-556 (721)
 37 COG3056 Uncharacterized lipopr  59.9      12  0.0003   16.8   5.0  134   12-159     4-155 (204)
 38 KOG2546 consensus               56.7     7.2 0.00018   18.1   1.9   31  154-184   444-475 (483)
 39 KOG0162 consensus               55.2     7.2 0.00018   18.1   1.7   47  137-184  1056-1103(1106)
 40 pfam11191 DUF2782 Protein of u  51.0     9.4 0.00024   17.3   1.7   50   62-114    38-89  (104)
 41 PRK03147 thiol-disulfide oxido  49.1      16 0.00042   15.9   2.7   40   48-99     36-75  (176)
 42 PRK10559 p-hydroxybenzoic acid  46.8      19 0.00048   15.5   6.7   31   56-88     39-69  (310)
 43 PRK13697 cytochrome c6; Provis  34.6      29 0.00074   14.3   2.1   26   19-45      2-27  (111)
 44 COG5368 Uncharacterized protei  33.9      14 0.00036   16.3   0.4   19  172-191   380-398 (451)
 45 KOG3523 consensus               31.6     6.5 0.00017   18.3  -1.6   37  149-185   624-663 (695)
 46 COG4787 FlgF Flagellar basal b  29.6      36 0.00091   13.8   5.2   48   68-116    59-106 (251)
 47 KOG2222 consensus               29.1      29 0.00073   14.4   1.4   33  152-184   567-600 (848)
 48 KOG3837 consensus               26.7      13 0.00033   16.5  -0.8   29   65-93    425-453 (523)
 49 PRK13861 type IV secretion sys  24.1      45  0.0011   13.2   4.5   52   55-111    32-88  (293)
 50 TIGR02924 ICDH_alpha isocitrat  23.6      46  0.0012   13.1   1.7   27   65-94     92-119 (481)
 51 KOG3669 consensus               22.8      47  0.0012   13.0   3.7   45  146-192   353-406 (705)
 52 KOG3601 consensus               22.5      12  0.0003   16.8  -1.7   34  154-187   184-218 (222)
 53 PRK04405 prsA peptidylprolyl i  22.2      49  0.0012   13.0   3.3   24  149-172   209-233 (298)
 54 TIGR00316 cdhC CO dehydrogenas  22.1      49  0.0013   13.0   2.9   70   84-182   274-359 (496)

No 1  
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00  E-value=4.1e-41  Score=270.82  Aligned_cols=151  Identities=50%  Similarity=0.962  Sum_probs=141.3

Q ss_pred             CCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf             00012333555552167830563688626898863027998369625554201212567532530576402334654433
Q gi|254780764|r   42 LSHEKEIFEKKPLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSA  121 (194)
Q Consensus        42 ~s~~~~~~t~~~~pr~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls~~~~~  121 (194)
                      .+......+|+|+|||||+|+++||.|.||+++|.+.|.|.++|+|++|+.|+++||+|+|.||..||||++++|++|++
T Consensus        21 ~~g~tig~sgLplPRfVSlKs~~VN~R~GP~~~yav~W~y~k~GlPVEIvqEy~~WRrirDadG~egWv~qsllsG~Rta  100 (171)
T COG3807          21 AQGTTIGASGLPLPRFVSLKSAEVNARVGPGTDYAVEWVYLKKGLPVEIVQEYDNWRRIRDADGTEGWVHQSLLSGKRTA  100 (171)
T ss_pred             HCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHEECCCCCCEEEEEECCCCCCEE
T ss_conf             33574278898455157731110431438984401578663069853315566436521078887102360010675217


Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEECCEEEEEECCEEEEEECCCEEEECCCCEEC
Q ss_conf             3334333434433113331799877537997389889999520998999989989999714122056676039
Q gi|254780764|r  122 IVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGIYPGEVFK  194 (194)
Q Consensus       122 ~~~~~~~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~W~kV~~~g~~GWV~k~~iwGv~~~e~~~  194 (194)
                      +..+.....  ...+|+|+.|...+.+++++++|++..+.+|+++||+++.+|.+||+++.-|||+||+|.||
T Consensus       101 i~apw~~~k--g~~i~l~k~~~~~a~V~A~lepgv~~sl~~C~g~wC~~~~~g~~GWi~q~eIWGaypge~~k  171 (171)
T COG3807         101 IIAPWMRDK--GVEINLRKSADDGARVVAKLEPGVVGSLKKCKGQWCRLTAKGYSGWISQGEIWGAYPGERFK  171 (171)
T ss_pred             EECCCCCCC--CEEEEEEECCCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCCCEEECCEEECCCCCCCCC
T ss_conf             960011696--40687750788887078996485488700056612787716744403213140357641259


No 2  
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=99.73  E-value=1.1e-18  Score=133.42  Aligned_cols=121  Identities=24%  Similarity=0.352  Sum_probs=106.8

Q ss_pred             EEEEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCC--EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             16783056368862689886302799836962555420121--2567532530576402334654433333433343443
Q gi|254780764|r   56 RFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYEN--WRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNP  133 (194)
Q Consensus        56 r~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~~--W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~~~~~~~  133 (194)
                      ||++ ..+..|||+|||.+|.|...+. +|+.++|+++.++  |++|++.+|..|||-.++++...+..      ..+..
T Consensus        26 ~~v~-~~~~~~vRsGpg~~y~I~~~i~-~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~------~~~p~   97 (205)
T COG3103          26 RYVS-DKLNTNVRSGPGDQYRIVGSIK-AGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSN------ERVPD   97 (205)
T ss_pred             HHEE-CCCEEEEECCCCCCEEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCCEEEEECHHHCCCCCCC------EECCC
T ss_conf             0001-2004453027875401456651-78589999872763379999668735888452420462010------24475


Q ss_pred             CCEEEECCCCCCCCEEEEECCCCEEEEEEEE-CCEEEEEECCEEEEEECCCE
Q ss_conf             3113331799877537997389889999520-99899998998999971412
Q gi|254780764|r  134 IYINLYKKPDIQSIIVAKVEPGVLLTIRECS-GEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       134 ~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~-~~W~kV~~~g~~GWV~k~~i  184 (194)
                      ..+|||+.|.+++.+++..++|+.+.....+ .+|++++++|..|||+++++
T Consensus        98 ~~~nVr~~t~t~~~v~g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~  149 (205)
T COG3103          98 LELNVRELTKTLSNVDGTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLV  149 (205)
T ss_pred             HHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCHHHHHHE
T ss_conf             4442311333034210133168579987412363136666354432333320


No 3  
>pfam06347 SH3_4 Bacterial SH3 domain. This family consists of several hypothetical bacterial proteins of unknown function. These are composed of SH3-like domains.
Probab=99.48  E-value=8.5e-14  Score=103.42  Aligned_cols=54  Identities=33%  Similarity=0.757  Sum_probs=52.3

Q ss_pred             CCCEEEECCCCCCCCEEEEECCCCEEEEEEEECCEEEEEECCEEEEEECCCEEE
Q ss_conf             331133317998775379973898899995209989999899899997141220
Q gi|254780764|r  133 PIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWG  186 (194)
Q Consensus       133 ~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~W~kV~~~g~~GWV~k~~iwG  186 (194)
                      .+.+|||++|+++|++++.+++|..+++.+|+++||+|+.+|.+|||++++|||
T Consensus         2 ~~~vnlr~~P~~~s~i~a~~~~gv~~~v~~c~~~Wc~v~~~g~~GWv~~~~lwG   55 (55)
T pfam06347         2 KKRVNLRKGPSPDAKVIAYLEPGVPVRVVKCNGNWCRVRADGATGWIYQSLLWG   55 (55)
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCEEEEEEECCCEEEEECCCCEEEEECCCCCC
T ss_conf             864345059999987428973998899998049789997199278678353409


No 4  
>pfam08239 SH3_3 Bacterial SH3 domain.
Probab=99.38  E-value=1.4e-12  Score=95.93  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             CEEEECCCCCCCCEEEEECCCCEEEEEEEECCEEEEEECCEEEEEECCCE
Q ss_conf             11333179987753799738988999952099899998998999971412
Q gi|254780764|r  135 YINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       135 ~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~W~kV~~~g~~GWV~k~~i  184 (194)
                      .||||++|+++++++++|++|+.+++++|+++||+|+++|++|||+++||
T Consensus         2 ~lNvR~~p~t~~~il~~l~~G~~v~v~~~~~~W~~V~~~g~~G~V~~~Yl   51 (52)
T pfam08239         2 NLNVRSGPGTSSKIIGQLPKGTKVTVLGETNGWYKIEYNGKTGYVSSDYV   51 (52)
T ss_pred             CEEEECCCCCCCHHEEEECCCCEEEEEEEECCEEEEEECCEEEEEEEEEC
T ss_conf             58883899999841499949999999948485899998999999992637


No 5  
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=99.17  E-value=7.8e-11  Score=85.28  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             EEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECC-CEEEEEECCCEEEEEECCCCC
Q ss_conf             78305636886268988630279983696255542012-125675325305764023346
Q gi|254780764|r   58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYE-NWRQIRDFDGTIGWINKSLLS  116 (194)
Q Consensus        58 ~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~-~W~kV~~~~g~~Gwv~~~~ls  116 (194)
                      ..++.+.+|||+||+++|+|+.++. +|..++++++.+ +|++|++.+|..|||+.++++
T Consensus         4 ~~Vt~~~vNvR~gP~t~~~ii~~l~-~G~~v~vl~~~~~~W~~i~~~~G~~Gwv~~~~v~   62 (63)
T smart00287        4 AVVTGDGLNVRSGPGTSSPIIGTLK-KGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EEEECCEEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEC
T ss_conf             9996786896169999863479986-9999999532699799999189989999927871


No 6  
>PRK10884 putative signal transduction protein; Provisional
Probab=99.15  E-value=1.8e-10  Score=83.06  Aligned_cols=63  Identities=33%  Similarity=0.477  Sum_probs=53.0

Q ss_pred             EEEEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECC--CEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf             1678305636886268988630279983696255542012--1256753253057640233465443
Q gi|254780764|r   56 RFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYE--NWRQIRDFDGTIGWINKSLLSGKRS  120 (194)
Q Consensus        56 r~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~--~W~kV~~~~g~~Gwv~~~~ls~~~~  120 (194)
                      ||+|=.-. +.||+|||.+|.|+..+. .|++|+++++.+  +|.+|++.+|..|||-..+++...+
T Consensus        26 rYVSD~l~-v~~RsGpg~~yRIv~~l~-sGt~V~lLe~~~~~gys~Vr~~~G~eGWV~s~yLs~~ps   90 (206)
T PRK10884         26 RYVSDELN-TWVRSGPGDQYRLVGTVN-AGEEVTLLQTDANTNYAQIKDSSGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEEEEEEE-EEEECCCCCCCEEEEEEC-CCCEEEEEEECCCCCEEEEECCCCCEEEEEHHHCCCCCC
T ss_conf             57752598-876428998754898866-998789977548888589983999788766876246886


No 7  
>pfam08239 SH3_3 Bacterial SH3 domain.
Probab=99.06  E-value=3.3e-10  Score=81.46  Aligned_cols=52  Identities=31%  Similarity=0.560  Sum_probs=47.8

Q ss_pred             CEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCEEEEEECCCEEEEEECCCCC
Q ss_conf             636886268988630279983696255542012125675325305764023346
Q gi|254780764|r   63 SRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS  116 (194)
Q Consensus        63 ~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls  116 (194)
                      +.+|||+||+++++|+.++. +|+.++|+++.++|++|+. +|..|||++.|++
T Consensus         1 s~lNvR~~p~t~~~il~~l~-~G~~v~v~~~~~~W~~V~~-~g~~G~V~~~Ylt   52 (52)
T pfam08239         1 SNLNVRSGPGTSSKIIGQLP-KGTKVTVLGETNGWYKIEY-NGKTGYVSSDYVS   52 (52)
T ss_pred             CCEEEECCCCCCCHHEEEEC-CCCEEEEEEEECCEEEEEE-CCEEEEEEEEECC
T ss_conf             95888389999984149994-9999999948485899998-9999999926371


No 8  
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=99.04  E-value=6.1e-10  Score=79.78  Aligned_cols=57  Identities=14%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             CCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEEC-CEEEEEE-CCEEEEEECCCE
Q ss_conf             34344331133317998775379973898899995209-9899998-998999971412
Q gi|254780764|r  128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSG-EWCFGYN-LDTEGWIKKQKI  184 (194)
Q Consensus       128 ~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~-~W~kV~~-~g~~GWV~k~~i  184 (194)
                      ..+++++.+|||++|+++++++++|.+|+.+++++.++ +|++|++ +|.+|||+..++
T Consensus         3 t~~Vt~~~vNvR~gP~t~~~ii~~l~~G~~v~vl~~~~~~W~~i~~~~G~~Gwv~~~~v   61 (63)
T smart00287        3 TAVVTGDGLNVRSGPGTSSPIIGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEEEECCEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEE
T ss_conf             79996786896169999863479986999999953269979999918998999992787


No 9  
>pfam06347 SH3_4 Bacterial SH3 domain. This family consists of several hypothetical bacterial proteins of unknown function. These are composed of SH3-like domains.
Probab=99.01  E-value=6.7e-10  Score=79.54  Aligned_cols=55  Identities=45%  Similarity=0.713  Sum_probs=50.6

Q ss_pred             ECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             056368862689886302799836962555420121256753253057640233465
Q gi|254780764|r   61 KASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSG  117 (194)
Q Consensus        61 k~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls~  117 (194)
                      +++.+|||+||+.+|+|+..+. .|.+++|.+..++|++|+ .+|..|||++++|.+
T Consensus         1 k~~~vnlr~~P~~~s~i~a~~~-~gv~~~v~~c~~~Wc~v~-~~g~~GWv~~~~lwG   55 (55)
T pfam06347         1 KKKRVNLRKGPSPDAKVIAYLE-PGVPVRVVKCNGNWCRVR-ADGATGWIYQSLLWG   55 (55)
T ss_pred             CCCEEEEECCCCCCCCEEEEEC-CCCEEEEEEECCCEEEEE-CCCCEEEEECCCCCC
T ss_conf             9864345059999987428973-998899998049789997-199278678353409


No 10 
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=98.66  E-value=6.7e-08  Score=67.28  Aligned_cols=58  Identities=21%  Similarity=0.353  Sum_probs=53.0

Q ss_pred             CCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEECC--EEEEEE-CCEEEEEECCCE
Q ss_conf             3343443311333179987753799738988999952099--899998-998999971412
Q gi|254780764|r  127 NRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGE--WCFGYN-LDTEGWIKKQKI  184 (194)
Q Consensus       127 ~~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~--W~kV~~-~g~~GWV~k~~i  184 (194)
                      ...++..+.+|||++|+.+|.|++++..|+.|++++.+++  |++|.+ +|.+|||...++
T Consensus        25 ~~~v~~~~~~~vRsGpg~~y~I~~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~l   85 (205)
T COG3103          25 TRYVSDKLNTNVRSGPGDQYRIVGSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNL   85 (205)
T ss_pred             HHHEECCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEECHHH
T ss_conf             4000120044530278754014566517858999987276337999966873588845242


No 11 
>PRK10884 putative signal transduction protein; Provisional
Probab=98.57  E-value=1.4e-07  Score=65.24  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEEC--CEEEEEE-CCEEEEEECCCEE
Q ss_conf             4344331133317998775379973898899995209--9899998-9989999714122
Q gi|254780764|r  129 KTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSG--EWCFGYN-LDTEGWIKKQKIW  185 (194)
Q Consensus       129 ~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~--~W~kV~~-~g~~GWV~k~~iw  185 (194)
                      .+...-.+.+|+||+.++.|++.++.|+.|++++.++  +|.+|.. +|.+|||..+||-
T Consensus        27 YVSD~l~v~~RsGpg~~yRIv~~l~sGt~V~lLe~~~~~gys~Vr~~~G~eGWV~s~yLs   86 (206)
T PRK10884         27 YVSDELNTWVRSGPGDQYRLVGTVNAGEEVTLLQTDANTNYAQIKDSSGRTAWIPLKQLS   86 (206)
T ss_pred             EEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEECCCCCEEEEEHHHCC
T ss_conf             775259887642899875489886699878997754888858998399978876687624


No 12 
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=98.56  E-value=3.4e-08  Score=69.09  Aligned_cols=54  Identities=26%  Similarity=0.533  Sum_probs=45.8

Q ss_pred             CCEEEEEECCCCCCCCEEEEEECCCEEEEEE--ECCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             5636886268988630279983696255542--0121256753253057640233465
Q gi|254780764|r   62 ASRANSRIGPGIMYTVVCTYLTKGLPVEVVK--EYENWRQIRDFDGTIGWINKSLLSG  117 (194)
Q Consensus        62 ~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~--~~~~W~kV~~~~g~~Gwv~~~~ls~  117 (194)
                      ...+|+|+|||++|+++.... .|..+.|-+  +..+|++|. +.|..||++..++..
T Consensus        39 ~a~vN~RsGPgT~Yp~vg~Ip-~G~~~~i~GC~~g~~wc~v~-~~g~~gW~~s~y~~~   94 (155)
T COG4991          39 TANVNVRSGPGTAYPAVGVIP-SGSAATIYGCLEGSTWCTVS-YGGGRGWAYSRYLQA   94 (155)
T ss_pred             CCCCEEECCCCCCCCEEEEEC-CCCEECCHHHHCCCCCEEEE-ECCCCCHHHHHHHHH
T ss_conf             667423148898886145754-78550231120699847887-558430068888875


No 13 
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=98.47  E-value=2e-07  Score=64.31  Aligned_cols=55  Identities=20%  Similarity=0.369  Sum_probs=49.9

Q ss_pred             CCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEE--CCEEEEEECCEEEEEECCCE
Q ss_conf             34433113331799877537997389889999520--99899998998999971412
Q gi|254780764|r  130 TNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECS--GEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       130 ~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~--~~W~kV~~~g~~GWV~k~~i  184 (194)
                      ..+..++|+|++|+|.+++++.++.|+.+.|-+|-  .+||+|++.|..||++.+|+
T Consensus        36 a~~~a~vN~RsGPgT~Yp~vg~Ip~G~~~~i~GC~~g~~wc~v~~~g~~gW~~s~y~   92 (155)
T COG4991          36 ASATANVNVRSGPGTAYPAVGVIPSGSAATIYGCLEGSTWCTVSYGGGRGWAYSRYL   92 (155)
T ss_pred             HHCCCCCEEECCCCCCCCEEEEECCCCEECCHHHHCCCCCEEEEECCCCCHHHHHHH
T ss_conf             213667423148898886145754785502311206998478875584300688888


No 14 
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.44  E-value=0.00044  Score=43.87  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             EEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECC------CEEEEEECCCEEEEEECCCCCCC
Q ss_conf             8305636886268988630279983696255542012------12567532530576402334654
Q gi|254780764|r   59 TIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYE------NWRQIRDFDGTIGWINKSLLSGK  118 (194)
Q Consensus        59 sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~------~W~kV~~~~g~~Gwv~~~~ls~~  118 (194)
                      .++++...+|+.|+.+...+.+... |+++.|-++..      +|.++.+.+|..||+...++..-
T Consensus       350 ~vn~~~~~ir~~~~~~s~~~~~~~f-g~~f~v~~~~k~~~~~~~w~~~~~~~ge~gwis~~~v~~~  414 (549)
T PRK13545        350 IVNSNGISIREEADASSKRLAIANF-GDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPF  414 (549)
T ss_pred             EEECCCEEEECCCCCCCCEEEEECC-CCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
T ss_conf             8722761575177867551588627-9779980566431158605999824886330210156641


No 15 
>KOG4226 consensus
Probab=97.37  E-value=0.0004  Score=44.16  Aligned_cols=103  Identities=17%  Similarity=0.309  Sum_probs=63.3

Q ss_pred             EEEECCCEEEEEEE-CCCEEEEEECCCEEEEEECCCCCCCCCC---------------CCCCCCCCCCCCCCEEEECCCC
Q ss_conf             99836962555420-1212567532530576402334654433---------------3334333434433113331799
Q gi|254780764|r   80 TYLTKGLPVEVVKE-YENWRQIRDFDGTIGWINKSLLSGKRSA---------------IVSPWNRKTNNPIYINLYKKPD  143 (194)
Q Consensus        80 ~~~~~g~~v~vi~~-~~~W~kV~~~~g~~Gwv~~~~ls~~~~~---------------~~~~~~~~~~~~~~lnvR~~Ps  143 (194)
                      .+. +|.-+.|.++ .++|++=. ++|..||.-..|....--.               .........+-.-.+-|+.-.+
T Consensus       125 sLt-KGtrv~vmEKssDGWWrG~-~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~s~vl~vVvaLYsFss  202 (379)
T KOG4226         125 SLT-KGTRVTVMEKSSDGWWRGS-YNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQGSRVLHVVVALYSFSS  202 (379)
T ss_pred             CCC-CCCEEEEEEECCCCCEECC-CCCEECCCCCCCEEHHCCCCCCCCCCCEECCHHHCCCCCCCCEEEEEEEEEECCCC
T ss_conf             332-4757999983468602144-58800101554340102444568865000351120247877458999999831467


Q ss_pred             CCCCEEEEECCCCEEEEEEE---ECCEEEEE-ECCEEEEEECCCEE
Q ss_conf             87753799738988999952---09989999-89989999714122
Q gi|254780764|r  144 IQSIIVAKVEPGVLLTIREC---SGEWCFGY-NLDTEGWIKKQKIW  185 (194)
Q Consensus       144 ~~s~iv~~l~~g~~v~i~~~---~~~W~kV~-~~g~~GWV~k~~iw  185 (194)
                      .+.+- -..++|++++|++.   +.+|++-. .+|+.|-|.+.|+-
T Consensus       203 sndeE-LsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~  247 (379)
T KOG4226         203 SNDEE-LSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVV  247 (379)
T ss_pred             CCHHH-CCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCEEECCEEE
T ss_conf             97222-1544585557424887880677640457713201033279


No 16 
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34  E-value=0.00012  Score=47.43  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=47.9

Q ss_pred             CCCEEEECCCCCCCCEE-EEECCCCEEEEEEEECCEEEEE-ECCEEEEEECCCEEEE
Q ss_conf             33113331799877537-9973898899995209989999-8998999971412205
Q gi|254780764|r  133 PIYINLYKKPDIQSIIV-AKVEPGVLLTIRECSGEWCFGY-NLDTEGWIKKQKIWGI  187 (194)
Q Consensus       133 ~~~lnvR~~Ps~~s~iv-~~l~~g~~v~i~~~~~~W~kV~-~~g~~GWV~k~~iwGv  187 (194)
                      ...+|.|.+|+++|.+. -.+.+|.-|+|....++|-+|. .+|..|||+++-+.|-
T Consensus        41 s~~VN~R~GP~~~yav~W~y~k~GlPVEIvqEy~~WRrirDadG~egWv~qsllsG~   97 (171)
T COG3807          41 SAEVNARVGPGTDYAVEWVYLKKGLPVEIVQEYDNWRRIRDADGTEGWVHQSLLSGK   97 (171)
T ss_pred             CCCEECCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHEECCCCCCEEEEEECCCCC
T ss_conf             110431438984401578663069853315566436521078887102360010675


No 17 
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.97  E-value=0.0015  Score=40.64  Aligned_cols=65  Identities=22%  Similarity=0.201  Sum_probs=53.6

Q ss_pred             CCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEE------CCEEEEEE-CCEEEEEECCCEEEECCCCE
Q ss_conf             3434433113331799877537997389889999520------99899998-99899997141220566760
Q gi|254780764|r  128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECS------GEWCFGYN-LDTEGWIKKQKIWGIYPGEV  192 (194)
Q Consensus       128 ~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~------~~W~kV~~-~g~~GWV~k~~iwGv~~~e~  192 (194)
                      ..+++.....+|+.|+.+++.++.++=|+.+.+.+.+      -+|.++.+ +|.+|||+..++--+--+-.
T Consensus       348 ~~~vn~~~~~ir~~~~~~s~~~~~~~fg~~f~v~~~~k~~~~~~~w~~~~~~~ge~gwis~~~v~~~~~~~~  419 (549)
T PRK13545        348 KYIVNSNGISIREEADASSKRLAIANFGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKSNNN  419 (549)
T ss_pred             EEEEECCCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCC
T ss_conf             478722761575177867551588627977998056643115860599982488633021015664146861


No 18 
>pfam08460 SH3_5 Bacterial SH3 domain.
Probab=96.39  E-value=0.013  Score=34.87  Aligned_cols=48  Identities=6%  Similarity=0.124  Sum_probs=33.0

Q ss_pred             CCCEEEECCCCCCCCEEEEECCCCEEEEEE--EECC--EEEE-EECCEEEEEE
Q ss_conf             331133317998775379973898899995--2099--8999-9899899997
Q gi|254780764|r  133 PIYINLYKKPDIQSIIVAKVEPGVLLTIRE--CSGE--WCFG-YNLDTEGWIK  180 (194)
Q Consensus       133 ~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~--~~~~--W~kV-~~~g~~GWV~  180 (194)
                      ...+|||.+|++++++++.+++|+.|.--+  +.++  |..- .++|.+-||.
T Consensus        12 ~~~~~Ir~~p~~ssp~~~~~~~G~~V~YD~v~~~dGy~WisY~s~sG~r~Yv~   64 (65)
T pfam08460        12 TKTTPIKGGPSLSAPVIGTLYKGDTVYYDQVLTADGYVWLSYTSYSGVRRYVP   64 (65)
T ss_pred             CCCCEEECCCCCCCCEEEEECCCCEEEECEEEECCCCEEEEEECCCCEEEEEE
T ss_conf             63006854876789468998999999838899809909999988899899988


No 19 
>KOG4226 consensus
Probab=95.86  E-value=0.012  Score=34.98  Aligned_cols=104  Identities=15%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             ECCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC------CCCCCCCCCEEEE---CCCCCCCC------
Q ss_conf             36962555420121256753253057640233465443333343------3343443311333---17998775------
Q gi|254780764|r   83 TKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSAIVSPW------NRKTNNPIYINLY---KKPDIQSI------  147 (194)
Q Consensus        83 ~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~------~~~~~~~~~lnvR---~~Ps~~s~------  147 (194)
                      ++++.+-.++....|++|+..-+.+|+|-..|+..+......+-      ..+..+...--.|   ..|++++.      
T Consensus        24 kkner~~llddsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~  103 (379)
T KOG4226          24 KKNERLWLLDDSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRI  103 (379)
T ss_pred             CCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             23615899717734033303445577666104311463135678876652336311468984446789875455893124


Q ss_pred             -------EE-----------EEECCCCEEEEEE-EECCEEEEEECCEEEEEECCCEEE
Q ss_conf             -------37-----------9973898899995-209989999899899997141220
Q gi|254780764|r  148 -------IV-----------AKVEPGVLLTIRE-CSGEWCFGYNLDTEGWIKKQKIWG  186 (194)
Q Consensus       148 -------iv-----------~~l~~g~~v~i~~-~~~~W~kV~~~g~~GWV~k~~iwG  186 (194)
                             ++           -.|-+|+.|.+++ |.++|.+=+++|+.||-.+.|+--
T Consensus       104 ~~~~tpAvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E  161 (379)
T KOG4226         104 YDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTE  161 (379)
T ss_pred             HHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCEECCCCCCCEEH
T ss_conf             3338842899851124665003324757999983468602144588001015543401


No 20 
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=95.50  E-value=0.028  Score=32.80  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             EEEECCCCEEEEEEE-ECCEEEEEEC-CEEEEEECCCE
Q ss_conf             799738988999952-0998999989-98999971412
Q gi|254780764|r  149 VAKVEPGVLLTIREC-SGEWCFGYNL-DTEGWIKKQKI  184 (194)
Q Consensus       149 v~~l~~g~~v~i~~~-~~~W~kV~~~-g~~GWV~k~~i  184 (194)
                      --.+.+|+.+.|++. +++|++++.. |..||++.+|+
T Consensus        18 eL~~~~Gd~v~v~~~~~~~W~~~~~~~g~~G~vP~~~v   55 (58)
T smart00326       18 ELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV   55 (58)
T ss_pred             EEEECCCCEEEEEEEECCCEEEEEECCCCEEEEEHHHE
T ss_conf             87383899999999818997999979999999907789


No 21 
>pfam07653 SH3_2 Variant SH3 domain. SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel.
Probab=95.41  E-value=0.023  Score=33.38  Aligned_cols=35  Identities=14%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             EEECCCCEEEEEEE-ECCEEEEEECCEEEEEECCCE
Q ss_conf             99738988999952-099899998998999971412
Q gi|254780764|r  150 AKVEPGVLLTIREC-SGEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       150 ~~l~~g~~v~i~~~-~~~W~kV~~~g~~GWV~k~~i  184 (194)
                      -.+.+|+++.|++. +++|++.+.+|+.||++.+||
T Consensus        16 L~f~~Gdii~v~~~~~~~Ww~g~~~g~~G~fP~~yV   51 (53)
T pfam07653        16 LTLKKGDVVKVLDKDDGGWWEGERGGRRGLVPSSYV   51 (53)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCEEEEEEHHHC
T ss_conf             789899999999954999389998997899858988


No 22 
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=94.94  E-value=0.054  Score=31.07  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             EEECCCCEEEEEEE-ECCEEEEEECC-EEEEEECCCE
Q ss_conf             99738988999952-09989999899-8999971412
Q gi|254780764|r  150 AKVEPGVLLTIREC-SGEWCFGYNLD-TEGWIKKQKI  184 (194)
Q Consensus       150 ~~l~~g~~v~i~~~-~~~W~kV~~~g-~~GWV~k~~i  184 (194)
                      -.+.+|+.+.|++. +++|++++..+ .+||++.+|+
T Consensus        16 L~~~~Gd~v~v~~~~~~~W~~~~~~~~~~G~~P~~yv   52 (54)
T cd00174          16 LSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYV   52 (54)
T ss_pred             EEECCCCEEEEEEECCCCEEEEEECCCCEEEEEHHHE
T ss_conf             5185899999989847997999989998999945979


No 23 
>KOG1428 consensus
Probab=93.49  E-value=0.53  Score=25.02  Aligned_cols=118  Identities=16%  Similarity=0.228  Sum_probs=74.4

Q ss_pred             EEEEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECC----CEEEEEECCCE-----EEEEECCCCCCC----CCCC
Q ss_conf             1678305636886268988630279983696255542012----12567532530-----576402334654----4333
Q gi|254780764|r   56 RFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYE----NWRQIRDFDGT-----IGWINKSLLSGK----RSAI  122 (194)
Q Consensus        56 r~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~----~W~kV~~~~g~-----~Gwv~~~~ls~~----~~~~  122 (194)
                      .|++--...+.+|.+|+++..-++.+.. |..++-|+|-+    -|.+..|..-.     -|+-..+-|+-.    +..+
T Consensus      2167 ~~~akD~aGlRiR~~~sLqSeqiGiv~~-~~~itFIdEi~NDDG~WlRLnDET~~~Y~~N~G~~eaWCLsf~q~L~ksLl 2245 (3738)
T KOG1428        2167 KFVAKDSAGLRIRSHPSLQSEQIGIVKV-NGTITFIDEIHNDDGVWLRLNDETIKKYVPNMGYTEAWCLSFNQHLGKSLL 2245 (3738)
T ss_pred             EEECCCCCCCEEECCCCCCCCEEEEEEC-CCEEEEHHHHCCCCCEEEEECHHHHHHHCCCCCCCHHHHHHCCHHCCCCCC
T ss_conf             0012466550653377432224537970-877986456327886399844688987367877212133010101063435


Q ss_pred             C---------------------------------CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEE----EEC
Q ss_conf             3---------------------------------343334344331133317998775379973898899995----209
Q gi|254780764|r  123 V---------------------------------SPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRE----CSG  165 (194)
Q Consensus       123 ~---------------------------------~~~~~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~----~~~  165 (194)
                      +                                 ..........+..|+|+-|+..+-++|.+--|..+...+    ..|
T Consensus      2246 ~~~~esD~~K~in~~~~q~at~qe~d~~~~~~~~~~~k~v~t~~s~~ni~S~Pn~~~i~~G~~vlG~kv~a~G~vtN~~G 2325 (3738)
T KOG1428        2246 VPVDESDFFKDINSCCPQEATMQEQDMPFLRGGPGMYKVVKTGPSGHNIRSCPNLRGIPIGMLVLGNKVKAVGEVTNSEG 2325 (3738)
T ss_pred             CCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEECCEEEEEEEEECCCC
T ss_conf             65550577777765082666642268662137887047984499856200389735674420343560123145623773


Q ss_pred             CEEEEEECC
Q ss_conf             989999899
Q gi|254780764|r  166 EWCFGYNLD  174 (194)
Q Consensus       166 ~W~kV~~~g  174 (194)
                      -|.+..-+.
T Consensus      2326 tWvqL~~~s 2334 (3738)
T KOG1428        2326 TWVQLDQNS 2334 (3738)
T ss_pred             EEEEECCCE
T ss_conf             599953735


No 24 
>KOG4278 consensus
Probab=93.14  E-value=0.062  Score=30.71  Aligned_cols=44  Identities=25%  Similarity=0.525  Sum_probs=28.7

Q ss_pred             ECCCEEEEEEE--CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             36962555420--1212567532530576402334654433333433
Q gi|254780764|r   83 TKGLPVEVVKE--YENWRQIRDFDGTIGWINKSLLSGKRSAIVSPWN  127 (194)
Q Consensus        83 ~~g~~v~vi~~--~~~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~  127 (194)
                      .+|+.+.|++-  .+.|...+..+|. |||-..|+....+.....+.
T Consensus       110 tKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLeKhsWY  155 (1157)
T KOG4278         110 TKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLEKHSWY  155 (1157)
T ss_pred             ECCCEEEEEEECCCCCEEEEECCCCC-CCCCCCCCCCCCCHHHCCCC
T ss_conf             03765788641478860000025887-55664444655213220300


No 25 
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=91.95  E-value=0.45  Score=25.47  Aligned_cols=57  Identities=28%  Similarity=0.506  Sum_probs=45.4

Q ss_pred             EECCEEEEEECCCCCCCCEEEEEECCCEEEEE-EECCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             30563688626898863027998369625554-20121256753253057640233465
Q gi|254780764|r   60 IKASRANSRIGPGIMYTVVCTYLTKGLPVEVV-KEYENWRQIRDFDGTIGWINKSLLSG  117 (194)
Q Consensus        60 ik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi-~~~~~W~kV~~~~g~~Gwv~~~~ls~  117 (194)
                      ...+.+|+|.|++++...+..+. .|..+.|. .+...|.++...+|..+|+...++..
T Consensus        82 ~s~t~~~vksg~~~~~~~~ssi~-~g~~~tv~~~~~~~w~~is~~~g~t~~v~~~~~~~  139 (475)
T PRK13914         82 VSATWLNVRSGAGVDNSIITSIK-GGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD  139 (475)
T ss_pred             CCCCCCEECCCCCCCCCCEEEEE-CCCEEEEEECCCCCCCCEECCCCCCEEECCCEEEC
T ss_conf             66754033046653455237873-58379997401344200100565301422420202


No 26 
>pfam08460 SH3_5 Bacterial SH3 domain.
Probab=91.59  E-value=0.49  Score=25.19  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             CEEEEEECCCCCCCCEEEEEECCCEEEEEEE----CCCEEEEEECCCEEEEE
Q ss_conf             6368862689886302799836962555420----12125675325305764
Q gi|254780764|r   63 SRANSRIGPGIMYTVVCTYLTKGLPVEVVKE----YENWRQIRDFDGTIGWI  110 (194)
Q Consensus        63 ~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~----~~~W~kV~~~~g~~Gwv  110 (194)
                      ..+|+|.+|+++.|++..+. +|+.+.-.+.    -.-|..=...+|..-|+
T Consensus        13 ~~~~Ir~~p~~ssp~~~~~~-~G~~V~YD~v~~~dGy~WisY~s~sG~r~Yv   63 (65)
T pfam08460        13 KTTPIKGGPSLSAPVIGTLY-KGDTVYYDQVLTADGYVWLSYTSYSGVRRYV   63 (65)
T ss_pred             CCCEEECCCCCCCCEEEEEC-CCCEEEECEEEECCCCEEEEEECCCCEEEEE
T ss_conf             30068548767894689989-9999983889980990999998889989998


No 27 
>KOG0515 consensus
Probab=91.46  E-value=0.062  Score=30.73  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=30.7

Q ss_pred             ECCCCEEEEEEEEC----CEEEEEECCEEEEEECCCEEEECCCC
Q ss_conf             73898899995209----98999989989999714122056676
Q gi|254780764|r  152 VEPGVLLTIRECSG----EWCFGYNLDTEGWIKKQKIWGIYPGE  191 (194)
Q Consensus       152 l~~g~~v~i~~~~~----~W~kV~~~g~~GWV~k~~iwGv~~~e  191 (194)
                      ...|+.++|+..++    +|.--..+|.+|||.+.|| |+||.=
T Consensus       702 f~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnyl-gLyPri  744 (752)
T KOG0515         702 FDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYL-GLYPRI  744 (752)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHH-HCCCCC
T ss_conf             4678636887427840334466764685665531232-027545


No 28 
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=91.09  E-value=0.26  Score=26.89  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             EEEECCCEEEEEEE-CCCEEEEEECCCEEEEEECCCCC
Q ss_conf             99836962555420-12125675325305764023346
Q gi|254780764|r   80 TYLTKGLPVEVVKE-YENWRQIRDFDGTIGWINKSLLS  116 (194)
Q Consensus        80 ~~~~~g~~v~vi~~-~~~W~kV~~~~g~~Gwv~~~~ls  116 (194)
                      .+. +|..+.|+++ .++|++++..+|..||+..+++.
T Consensus        20 ~~~-~Gd~v~v~~~~~~~W~~~~~~~g~~G~vP~~~v~   56 (58)
T smart00326       20 SFK-KGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE   56 (58)
T ss_pred             EEC-CCCEEEEEEEECCCEEEEEECCCCEEEEEHHHEE
T ss_conf             383-8999999998189979999799999999077899


No 29 
>KOG4225 consensus
Probab=88.88  E-value=0.64  Score=24.51  Aligned_cols=102  Identities=16%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             EEEECCCEEEEEEE-CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCCC--CCCEEEEECC
Q ss_conf             99836962555420-12125675325305764023346544333334333--4344331133317998--7753799738
Q gi|254780764|r   80 TYLTKGLPVEVVKE-YENWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNR--KTNNPIYINLYKKPDI--QSIIVAKVEP  154 (194)
Q Consensus        80 ~~~~~g~~v~vi~~-~~~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~~--~~~~~~~lnvR~~Ps~--~s~iv~~l~~  154 (194)
                      .+. +|..+-|+.+ -++|+... ++|..|.+-.+|+-............  -......---++.++.  ++.+--.+.+
T Consensus       248 ~~~-kGDIVyI~rkvD~nWyeGE-hhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y~F~~~s~~Els~~k  325 (489)
T KOG4225         248 PFN-KGDIVYILRKVDQNWYEGE-HHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKYNFNADSPVELSLRK  325 (489)
T ss_pred             CCC-CCCEEEEEEECCCCEEEEE-ECCEECCEECHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf             647-8888999760247521011-15621110010135347300137677996555555530014787777750001036


Q ss_pred             CCEEEEEE-EECCEEEEEEC--CEEEEEECCC
Q ss_conf             98899995-20998999989--9899997141
Q gi|254780764|r  155 GVLLTIRE-CSGEWCFGYNL--DTEGWIKKQK  183 (194)
Q Consensus       155 g~~v~i~~-~~~~W~kV~~~--g~~GWV~k~~  183 (194)
                      |+.+.+.. .+++|+.=...  |..|--.-+|
T Consensus       326 ge~v~L~r~vd~nw~eG~i~g~~rqgifP~Sy  357 (489)
T KOG4225         326 GERVTLTRQVDENWYEGKIPGTNRQGIFPASY  357 (489)
T ss_pred             CCEEEEEEECCCCEEECCCCCCCCCCCCCHHH
T ss_conf             85678877415754530023546456565467


No 30 
>KOG1029 consensus
Probab=84.73  E-value=1.5  Score=22.21  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=26.2

Q ss_pred             ECCCCEEEEEEEECCEEEEEECCEEEEEECCCEE
Q ss_conf             7389889999520998999989989999714122
Q gi|254780764|r  152 VEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIW  185 (194)
Q Consensus       152 l~~g~~v~i~~~~~~W~kV~~~g~~GWV~k~~iw  185 (194)
                      ..+|+.++|++.++.|..=+..|.+||-.++|+=
T Consensus       832 Fskgd~I~VlekqemwW~G~v~g~~GwFPksYVk  865 (1118)
T KOG1029         832 FSKGDTITVLEKQEMWWFGEVAGEIGWFPKSYVK  865 (1118)
T ss_pred             CCCCCEEEEEHHCCCEECCCCCCCCCCCCHHHHH
T ss_conf             4678846532000563004536766757377652


No 31 
>KOG2070 consensus
Probab=78.78  E-value=1.2  Score=22.84  Aligned_cols=32  Identities=22%  Similarity=0.522  Sum_probs=17.0

Q ss_pred             CCCEEEEEEE-CCCEEEEEECCCEEEEEECCCCC
Q ss_conf             6962555420-12125675325305764023346
Q gi|254780764|r   84 KGLPVEVVKE-YENWRQIRDFDGTIGWINKSLLS  116 (194)
Q Consensus        84 ~g~~v~vi~~-~~~W~kV~~~~g~~Gwv~~~~ls  116 (194)
                      +|..+.|... .|+|+.=. .+|.+||.-..|+.
T Consensus        38 KgDvItVTq~eeGGWWEGT-lng~TGWFPsnYV~   70 (661)
T KOG2070          38 KGDVITVTQVEEGGWWEGT-LNGRTGWFPSNYVR   70 (661)
T ss_pred             CCCEEEEEEECCCCCEECC-CCCCCCCCCHHHHH
T ss_conf             6887899875037611122-06846746258888


No 32 
>pfam00018 SH3_1 SH3 domain. SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel.
Probab=76.92  E-value=3.3  Score=20.16  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=16.5

Q ss_pred             ECCCCEEEEEEE-ECCEEEEEE-CCEEEEEE
Q ss_conf             738988999952-099899998-99899997
Q gi|254780764|r  152 VEPGVLLTIREC-SGEWCFGYN-LDTEGWIK  180 (194)
Q Consensus       152 l~~g~~v~i~~~-~~~W~kV~~-~g~~GWV~  180 (194)
                      +.+|+.+.|++. +.+|++++. +|.+||++
T Consensus        16 ~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P   46 (47)
T pfam00018        16 FKKGDIIIVLEKSDDGWWKGRLKGGGEGLIP   46 (47)
T ss_pred             CCCCCEEEEEEECCCCEEEEEECCCCEEEEC
T ss_conf             9899999994862999189997999999972


No 33 
>KOG4792 consensus
Probab=71.56  E-value=6.9  Score=18.19  Aligned_cols=119  Identities=14%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             EEEEE---ECCCCCCCCEEEEEECCCEEEEEEE-CCCEEEEEECCCEEEEEECCCCCCCCC------CCCCC--------
Q ss_conf             36886---2689886302799836962555420-121256753253057640233465443------33334--------
Q gi|254780764|r   64 RANSR---IGPGIMYTVVCTYLTKGLPVEVVKE-YENWRQIRDFDGTIGWINKSLLSGKRS------AIVSP--------  125 (194)
Q Consensus        64 ~vNvR---~GP~~~y~i~~~~~~~g~~v~vi~~-~~~W~kV~~~~g~~Gwv~~~~ls~~~~------~~~~~--------  125 (194)
                      .+-+|   .-+|.+-. ..-+ ++|+.++|+++ .+.|+.-+..+|..|.|-..|+..-+.      ++...        
T Consensus       124 ~~~vr~~fdF~G~dee-DLPF-kkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q  201 (293)
T KOG4792         124 AEYVRALFDFNGNDEE-DLPF-KKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQ  201 (293)
T ss_pred             HEEEEEEECCCCCCCC-CCCC-CCCCEEEEECCCHHHHHHHHCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             1001234203798634-4885-5675889845967877554156885352304388875142112013567753133788


Q ss_pred             CC------CC-CCCCCC-E-EEEC-----------CCCCCCCEEEEECCCCEEEEEEEE-CCEEEEEECCEEEEEECCCE
Q ss_conf             33------34-344331-1-3331-----------799877537997389889999520-99899998998999971412
Q gi|254780764|r  126 WN------RK-TNNPIY-I-NLYK-----------KPDIQSIIVAKVEPGVLLTIRECS-GEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       126 ~~------~~-~~~~~~-l-nvR~-----------~Ps~~s~iv~~l~~g~~v~i~~~~-~~W~kV~~~g~~GWV~k~~i  184 (194)
                      ..      .. -...+. + +.+.           -|+.--+..-.|+.|+.|++.+.. .+-++-+.||+.|-+.-.++
T Consensus       202 ~~g~~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegelnGk~G~fPfThv  281 (293)
T KOG4792         202 SGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHV  281 (293)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEHHCCCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCCEEE
T ss_conf             88988877887744577675555787010110110887557145311028689997602474365444674366552358


No 34 
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC; InterPro: IPR009154   This family includes TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes .; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=70.80  E-value=2.4  Score=21.01  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             EEEECCEEEEEECCCCCCC-CEEEEEECCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             7830563688626898863-027998369625554201212567532530576402334654433333433343443311
Q gi|254780764|r   58 VTIKASRANSRIGPGIMYT-VVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYI  136 (194)
Q Consensus        58 ~sik~~~vNvR~GP~~~y~-i~~~~~~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~~~~~~~~~l  136 (194)
                      +|+..-.+.. ..|+-+-. -.+.|. .=.||+|+.+.+||.+|.-    .||-...-..  | ++....+..   -.+.
T Consensus       212 yS~~~~~~Y~-~~PsG~~~~~~G~L~-~A~evkvl~~~gD~~qvei----~GW~~s~G~~--R-v~~~~~Gk~---I~~A  279 (394)
T TIGR02162       212 YSVRIIPVYK-DKPSGEKKKAAGRLL-PASEVKVLKEKGDWLQVEI----TGWRKSKGFG--R-VIYEKFGKR---IFVA  279 (394)
T ss_pred             CHHHHHHHHC-CCCCCHHHHHCCCCC-CCCCEEEEEECCCEEEEEE----ECCCCCCCCC--C-CEECCCCCH---HHHH
T ss_conf             5055567530-388606898558887-8874378841688789984----0530013662--0-010278860---5686


Q ss_pred             EEECCCCCCCCEEEEECCCCEEEEEEEECCEEEEEECCEEEEEECCCEEE
Q ss_conf             33317998775379973898899995209989999899899997141220
Q gi|254780764|r  137 NLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWG  186 (194)
Q Consensus       137 nvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~W~kV~~~g~~GWV~k~~iwG  186 (194)
                      -|+.....+.+.|..++   .-..-.+...|-+|+..   -||.+..+-+
T Consensus       280 ~L~~~~~~~~~~v~~l~---~~~d~~T~~~W~~vs~~---~W~~k~~l~~  323 (394)
T TIGR02162       280 SLAKEAAQSDASVTTLE---KKVDPDTGLTWEQVSAT---VWMKKEDLVN  323 (394)
T ss_pred             HHHHHHHCCCCEEECCC---CEECCCCCCCHHHHHHH---HHHHHHHHHH
T ss_conf             63177733787152176---20115667846666777---6643553230


No 35 
>KOG2996 consensus
Probab=69.81  E-value=3.2  Score=20.20  Aligned_cols=35  Identities=17%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             EEECCCCEEEEEEE---ECCEEEEEECCEEEEEECCCE
Q ss_conf             99738988999952---099899998998999971412
Q gi|254780764|r  150 AKVEPGVLLTIREC---SGEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       150 ~~l~~g~~v~i~~~---~~~W~kV~~~g~~GWV~k~~i  184 (194)
                      -.+..|++|.|+..   +.+|.+=+.+|..||-...|+
T Consensus       822 LSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYV  859 (865)
T KOG2996         822 LSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYV  859 (865)
T ss_pred             CCCCCCCEEEEEHHCCCCCCEECCEECCCCCCCCCCCC
T ss_conf             56545878997021366576110213571155310026


No 36 
>KOG3557 consensus
Probab=63.41  E-value=2.7  Score=20.70  Aligned_cols=38  Identities=16%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             EECCCCEEEEEEEECCEEEEEE-CCEEEEEECCCEEEEC
Q ss_conf             9738988999952099899998-9989999714122056
Q gi|254780764|r  151 KVEPGVLLTIRECSGEWCFGYN-LDTEGWIKKQKIWGIY  188 (194)
Q Consensus       151 ~l~~g~~v~i~~~~~~W~kV~~-~g~~GWV~k~~iwGv~  188 (194)
                      .+.+|+.++++.-..+|.+++. .|+.|||...-|-++-
T Consensus       518 sV~k~E~LEvl~d~R~WW~~kn~~G~~GyvP~nIL~~~~  556 (721)
T KOG3557         518 SVKKGEVLEVLDDGRKWWKVKNGHGRAGYVPSNILAPLQ  556 (721)
T ss_pred             HHHCCCHHHEECCCCCCEECCCCCCCCCCCCHHHHCCCC
T ss_conf             331120110001354502214776776776255416688


No 37 
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=59.92  E-value=12  Score=16.80  Aligned_cols=134  Identities=16%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EEECCEEEEEECCCCCCCCEEEEEECCCEEEE
Q ss_conf             44678999999999999999999975331000012333555552167-83056368862689886302799836962555
Q gi|254780764|r   12 LDLRKYMPKILQNSLIFTLAIYFYLAPILALSHEKEIFEKKPLPRFV-TIKASRANSRIGPGIMYTVVCTYLTKGLPVEV   90 (194)
Q Consensus        12 ~~~~~~~~k~~~~~ll~~l~~~~~~~~~~~~s~~~~~~t~~~~pr~~-sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~v   90 (194)
                      ..+..++.+....++++.++.++++..|.+.+..-.-.-..|+|-.- ++....+-+-..-..+-.-+..+.+.|..+++
T Consensus         4 ~~~~~i~~k~~t~k~L~~laa~~lLagC~a~~~tl~~tpp~~~~sqn~v~~~~~vsit~kD~R~~q~vA~v~~~~~lv~L   83 (204)
T COG3056           4 AALCVIESKNMTKKILFPLAAIFLLAGCAAPPTTLIVTPPAPLPSQNPVLMGVTVSITGKDQRSDQAVAKVTRDNQLVKL   83 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf             58988761788999999999999997537997503136997664437233141899970550166788762047978983


Q ss_pred             EEECC---------------CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCEEEEEC
Q ss_conf             42012---------------12567532530576402334654433333433343443311333179987--75379973
Q gi|254780764|r   91 VKEYE---------------NWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYINLYKKPDIQ--SIIVAKVE  153 (194)
Q Consensus        91 i~~~~---------------~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~~~~~~~~~lnvR~~Ps~~--s~iv~~l~  153 (194)
                      ....+               .-++|-..++..-|+.-..+-              .....-|+|..=++.  -.|.++..
T Consensus        84 ~as~~vr~llq~vl~~q~~srGfrig~n~~~n~~i~V~qly--------------a~V~qgnlryni~tkv~i~I~A~~~  149 (204)
T COG3056          84 TASRDVRFLLQEVLEKQMTSRGFRVGPNGEVNLQITVDQLY--------------ADVEQGNLRYNIDTKVDITITATAA  149 (204)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEHHHHH--------------HHHHHCCEEECCCCEEEEEEEEECC
T ss_conf             47813999999999998653436753689831899849966--------------3556331233025458899999737


Q ss_pred             CCCEEE
Q ss_conf             898899
Q gi|254780764|r  154 PGVLLT  159 (194)
Q Consensus       154 ~g~~v~  159 (194)
                      +|..++
T Consensus       150 ~Gk~~K  155 (204)
T COG3056         150 NGKMVK  155 (204)
T ss_pred             CCCEEE
T ss_conf             871553


No 38 
>KOG2546 consensus
Probab=56.71  E-value=7.2  Score=18.06  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=24.7

Q ss_pred             CCCEEEEEEE-ECCEEEEEECCEEEEEECCCE
Q ss_conf             8988999952-099899998998999971412
Q gi|254780764|r  154 PGVLLTIREC-SGEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       154 ~g~~v~i~~~-~~~W~kV~~~g~~GWV~k~~i  184 (194)
                      .|.++.+++. +++||..-.+|.+|.-.++|+
T Consensus       444 E~ailyv~kknddgw~EgV~~~VTglFpgnyv  475 (483)
T KOG2546         444 EGAILYVLKKNDDGWYEGVQDGVTGLFPGNYV  475 (483)
T ss_pred             CCCEEEEEEECCCCCHHHEECCCCEECCCCCC
T ss_conf             36379999725885021000574131457665


No 39 
>KOG0162 consensus
Probab=55.16  E-value=7.2  Score=18.06  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             EEECCCCCCCCEEEEECCCCEEEEEEEE-CCEEEEEECCEEEEEECCCE
Q ss_conf             3331799877537997389889999520-99899998998999971412
Q gi|254780764|r  137 NLYKKPDIQSIIVAKVEPGVLLTIRECS-GEWCFGYNLDTEGWIKKQKI  184 (194)
Q Consensus       137 nvR~~Ps~~s~iv~~l~~g~~v~i~~~~-~~W~kV~~~g~~GWV~k~~i  184 (194)
                      -++.-|+.+. ---.+.+|++++|...+ .+|..-..+|++||+...|+
T Consensus      1056 A~Y~y~gq~~-dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv 1103 (1106)
T KOG0162        1056 ALYDYPGQDV-DELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYV 1103 (1106)
T ss_pred             EECCCCCCCC-CCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf             2235789980-30462578778872268874201024886665554342


No 40 
>pfam11191 DUF2782 Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.
Probab=51.05  E-value=9.4  Score=17.35  Aligned_cols=50  Identities=14%  Similarity=0.114  Sum_probs=34.8

Q ss_pred             CCEEEEEECCCCCCCCEEEEEECC--CEEEEEEECCCEEEEEECCCEEEEEECCC
Q ss_conf             563688626898863027998369--62555420121256753253057640233
Q gi|254780764|r   62 ASRANSRIGPGIMYTVVCTYLTKG--LPVEVVKEYENWRQIRDFDGTIGWINKSL  114 (194)
Q Consensus        62 ~~~vNvR~GP~~~y~i~~~~~~~g--~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~  114 (194)
                      .-++-++.+-+.   .+..|.-+|  +.++|+-+.+-||...+.+|...|.....
T Consensus        38 epevtI~~~~~~---~ieEYRvnG~ly~ikV~P~~g~pYyl~d~dg~g~~~~~~~   89 (104)
T pfam11191        38 EPEVTIIRDGGA---TIEEYRVNGQLYMIKVQPKVGPPYYLVDADGDGQYSESDA   89 (104)
T ss_pred             CCEEEEEECCCC---EEEEEEECCEEEEEEEECCCCCCEEEEECCCCCCEEECCC
T ss_conf             960799958982---8999977899999998679999869881589876375687


No 41 
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=49.10  E-value=16  Score=15.89  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             CCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCEEE
Q ss_conf             3355555216783056368862689886302799836962555420121256
Q gi|254780764|r   48 IFEKKPLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQ   99 (194)
Q Consensus        48 ~~t~~~~pr~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~~~~W~k   99 (194)
                      ...|.+.|.|.-...+        |..+..- .  .+|.++ ++.-+..|+-
T Consensus        36 ~~iG~~aP~f~l~~l~--------G~~v~ls-d--~kGK~v-ll~FWAtWC~   75 (176)
T PRK03147         36 MQVGKEAPNFVLTDLE--------GKKIELK-D--LKGKGV-FLNFWGTWCK   75 (176)
T ss_pred             CCCCCCCCCCEEECCC--------CCEEEHH-H--HCCCEE-EEEEECCCCC
T ss_conf             3379908971627899--------8987189-9--699979-9999789792


No 42 
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=46.79  E-value=19  Score=15.49  Aligned_cols=31  Identities=13%  Similarity=0.066  Sum_probs=17.3

Q ss_pred             EEEEEECCEEEEEECCCCCCCCEEEEEECCCEE
Q ss_conf             167830563688626898863027998369625
Q gi|254780764|r   56 RFVTIKASRANSRIGPGIMYTVVCTYLTKGLPV   88 (194)
Q Consensus        56 r~~sik~~~vNvR~GP~~~y~i~~~~~~~g~~v   88 (194)
                      +-+.+.++.+++  .|-.+..|...+.+.|..|
T Consensus        39 ddAyV~a~iv~V--sp~VsG~V~eV~V~dnq~V   69 (310)
T PRK10559         39 RDARFSADVVAI--APDVSGLITQVNVHDNQLV   69 (310)
T ss_pred             CCEEEEEEEEEE--ECCCCEEEEEEECCCCCEE
T ss_conf             773898579999--3667469999991794987


No 43 
>PRK13697 cytochrome c6; Provisional
Probab=34.61  E-value=29  Score=14.34  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999997533100001
Q gi|254780764|r   19 PKILQNSLIFTLAIYFYLAPILALSHE   45 (194)
Q Consensus        19 ~k~~~~~ll~~l~~~~~~~~~~~~s~~   45 (194)
                      .+++...++.+++++ +..++++++++
T Consensus         2 k~l~~~~l~~~~~~~-~~~~~pA~Aad   27 (111)
T PRK13697          2 KKILKLVLLTLLLLT-FAFTSPAFAAD   27 (111)
T ss_pred             HHHHHHHHHHHHHHH-HHCCCHHHHHH
T ss_conf             789999999999999-98035544416


No 44 
>COG5368 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.92  E-value=14  Score=16.30  Aligned_cols=19  Identities=37%  Similarity=0.706  Sum_probs=15.0

Q ss_pred             ECCEEEEEECCCEEEECCCC
Q ss_conf             89989999714122056676
Q gi|254780764|r  172 NLDTEGWIKKQKIWGIYPGE  191 (194)
Q Consensus       172 ~~g~~GWV~k~~iwGv~~~e  191 (194)
                      ++|.+|||++.++ |+..+-
T Consensus       380 ~~g~~GWVs~~~~-gidQGi  398 (451)
T COG5368         380 YNGTTGWVSKTHL-GIDQGI  398 (451)
T ss_pred             CCCCCCCEECCEE-ECCCCC
T ss_conf             8898664224402-014422


No 45 
>KOG3523 consensus
Probab=31.62  E-value=6.5  Score=18.34  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             EEEECCCCEEEEEEEE-CCEEEEE--ECCEEEEEECCCEE
Q ss_conf             7997389889999520-9989999--89989999714122
Q gi|254780764|r  149 VAKVEPGVLLTIRECS-GEWCFGY--NLDTEGWIKKQKIW  185 (194)
Q Consensus       149 v~~l~~g~~v~i~~~~-~~W~kV~--~~g~~GWV~k~~iw  185 (194)
                      --+|+.++++.|+... ++|++=.  .+|-.||...+|+-
T Consensus       624 el~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~ve  663 (695)
T KOG3523         624 ELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVE  663 (695)
T ss_pred             EEEEEHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHH
T ss_conf             0010130254554237884320403466766756199999


No 46 
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=29.61  E-value=36  Score=13.81  Aligned_cols=48  Identities=19%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             EECCCCCCCCEEEEEECCCEEEEEEECCCEEEEEECCCEEEEEECCCCC
Q ss_conf             6268988630279983696255542012125675325305764023346
Q gi|254780764|r   68 RIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS  116 (194)
Q Consensus        68 R~GP~~~y~i~~~~~~~g~~v~vi~~~~~W~kV~~~~g~~Gwv~~~~ls  116 (194)
                      -+-||++.. -+.+..-|-|+.|--+.++|.-|++.+|.++|...--+.
T Consensus        59 ~s~pg~d~s-pG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~q  106 (251)
T COG4787          59 ASTPGTDMS-PGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNIQ  106 (251)
T ss_pred             CCCCCCCCC-CCCCCCCCCCCEEEECCCCEEEEECCCCCCHHEECCCEE
T ss_conf             146765678-861013688530797368569998688750111157467


No 47 
>KOG2222 consensus
Probab=29.15  E-value=29  Score=14.38  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             ECCCCEEEEEEEECCEEEEE-ECCEEEEEECCCE
Q ss_conf             73898899995209989999-8998999971412
Q gi|254780764|r  152 VEPGVLLTIRECSGEWCFGY-NLDTEGWIKKQKI  184 (194)
Q Consensus       152 l~~g~~v~i~~~~~~W~kV~-~~g~~GWV~k~~i  184 (194)
                      ..+++.++++...++-|-|. .||.+||-....+
T Consensus       567 frkndiitiisekdehcwvgelnglrgwfpakfv  600 (848)
T KOG2222         567 FRKNDIITIISEKDEHCWVGELNGLRGWFPAKFV  600 (848)
T ss_pred             CCCCCEEEEEECCCCCEEEECCCCCCCCCHHHHH
T ss_conf             5436678985237762156302663455619999


No 48 
>KOG3837 consensus
Probab=26.74  E-value=13  Score=16.50  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             68862689886302799836962555420
Q gi|254780764|r   65 ANSRIGPGIMYTVVCTYLTKGLPVEVVKE   93 (194)
Q Consensus        65 vNvR~GP~~~y~i~~~~~~~g~~v~vi~~   93 (194)
                      +|+|.|||++..-...+.+.|...+|..+
T Consensus       425 lni~rg~~~nr~fqR~fkr~g~kfeifhk  453 (523)
T KOG3837         425 LNIRRGPGLNREFQRRFKRLGKKFEIFHK  453 (523)
T ss_pred             EECCCCCCCCHHHHHHHHHCCEEEEEEEC
T ss_conf             65057876348999999855736888521


No 49 
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=24.14  E-value=45  Score=13.20  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=25.6

Q ss_pred             CEEEEEEC---CEEEEEECCCCCCCCEEEEEECCCEEEEEEE--CCCEEEEEECCCEEEEEE
Q ss_conf             21678305---6368862689886302799836962555420--121256753253057640
Q gi|254780764|r   55 PRFVTIKA---SRANSRIGPGIMYTVVCTYLTKGLPVEVVKE--YENWRQIRDFDGTIGWIN  111 (194)
Q Consensus        55 pr~~sik~---~~vNvR~GP~~~y~i~~~~~~~g~~v~vi~~--~~~W~kV~~~~g~~Gwv~  111 (194)
                      ||..++..   +.+.++..+|....|  ++. .|+.++-++-  ..+| +|.. .|..-++.
T Consensus        32 ~Riq~v~Ynp~~V~~V~~~~G~~T~I--~F~-~dE~I~~v~~Gd~~~W-~v~~-~gN~lfiK   88 (293)
T PRK13861         32 PRMRYLAYNPDQVVRLSTAVGATLVV--TFG-ANETVTAVAVSNSKDL-AALP-RGNYLFFK   88 (293)
T ss_pred             CCCEEEEECCCCEEEEEEECCEEEEE--EEC-CCCEEEEECCCCCCCE-EEEC-CCCEEEEE
T ss_conf             77179880888889999987469999--988-9987998615882014-8962-78779996


No 50 
>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273   This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria. Many of the species containing these proteins appear to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 from EC vs. NADPH -- 1.1.1.42 from EC) is unclear..
Probab=23.57  E-value=46  Score=13.13  Aligned_cols=27  Identities=37%  Similarity=0.543  Sum_probs=13.0

Q ss_pred             EEEEECCCCCC-CCEEEEEECCCEEEEEEEC
Q ss_conf             68862689886-3027998369625554201
Q gi|254780764|r   65 ANSRIGPGIMY-TVVCTYLTKGLPVEVVKEY   94 (194)
Q Consensus        65 vNvR~GP~~~y-~i~~~~~~~g~~v~vi~~~   94 (194)
                      +|+|  |..+| |++.+.. .++-+.|+-|.
T Consensus        92 ANiR--PCvsyhP~i~t~~-p~ldiVivREN  119 (481)
T TIGR02924        92 ANIR--PCVSYHPVIETKY-PNLDIVIVREN  119 (481)
T ss_pred             EECC--CCCCCCCEECCCC-CCCCEEEEEEC
T ss_conf             4126--6530035241677-98346999835


No 51 
>KOG3669 consensus
Probab=22.79  E-value=47  Score=13.04  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCEEEEEE---------CCCEEEECCCCE
Q ss_conf             75379973898899995209989999899899997---------141220566760
Q gi|254780764|r  146 SIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIK---------KQKIWGIYPGEV  192 (194)
Q Consensus       146 s~iv~~l~~g~~v~i~~~~~~W~kV~~~g~~GWV~---------k~~iwGv~~~e~  192 (194)
                      ..|-.+.+.|..-+.+.|.+.|.-|...|.  |+.         +-.+-|.|.||.
T Consensus       353 ~GVt~~~P~Gk~w~liqc~~~wisv~~sgv--~i~s~k~~~~~~kgS~~G~l~n~~  406 (705)
T KOG3669         353 EGVTDKLPMGKWWQLIQCQPSWISVNNSGV--WISSGKNEFHVAKGSLIGTLWNHV  406 (705)
T ss_pred             CCCCCCCCCCCCEEEEECCCEEEEEECCEE--EEEECCCCEEECCCCCCEEEECCC
T ss_conf             066656765510221104742676504407--998057712311043100551576


No 52 
>KOG3601 consensus
Probab=22.46  E-value=12  Score=16.78  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=15.7

Q ss_pred             CCCEEEEEEEE-CCEEEEEECCEEEEEECCCEEEE
Q ss_conf             89889999520-99899998998999971412205
Q gi|254780764|r  154 PGVLLTIRECS-GEWCFGYNLDTEGWIKKQKIWGI  187 (194)
Q Consensus       154 ~g~~v~i~~~~-~~W~kV~~~g~~GWV~k~~iwGv  187 (194)
                      .|+..+++... ..|-.=+..|..|--...|+-|.
T Consensus       184 ~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601         184 RGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             CCCCCEEECCCCCCHHHCCCCCCEEEECCCCCCCC
T ss_conf             58843660578831221233674034057654554


No 53 
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=22.25  E-value=49  Score=12.97  Aligned_cols=24  Identities=13%  Similarity=-0.078  Sum_probs=12.9

Q ss_pred             EEEECCCCEEE-EEEEECCEEEEEE
Q ss_conf             79973898899-9952099899998
Q gi|254780764|r  149 VAKVEPGVLLT-IRECSGEWCFGYN  172 (194)
Q Consensus       149 v~~l~~g~~v~-i~~~~~~W~kV~~  172 (194)
                      .-.|..|.... ....+-+|+=|+.
T Consensus       209 af~Lk~geis~~PvkT~~GYhIIK~  233 (298)
T PRK04405        209 AFKLKNGEYTTTPVKTTYGYEVIKM  233 (298)
T ss_pred             HHCCCCCCCCCCCEECCCCEEEEEE
T ss_conf             9748899816884521673399998


No 54 
>TIGR00316 cdhC CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=22.08  E-value=49  Score=12.95  Aligned_cols=70  Identities=16%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             CCCEEEEEEECC--CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEE---
Q ss_conf             696255542012--125675325305764023346544333334333434433113331799877537997389889---
Q gi|254780764|r   84 KGLPVEVVKEYE--NWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLL---  158 (194)
Q Consensus        84 ~g~~v~vi~~~~--~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~~~~~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v---  158 (194)
                      -++|.+-.+=|+  ..|--. -|| .||+|+.|--.....++-+                     ..-|+-.=|.+|   
T Consensus       274 f~~PhTSCGCFEai~FYiPE-vDG-iG~vhR~y~getP~GlpFS---------------------tlAGQcsGGKQV~GF  330 (496)
T TIGR00316       274 FEYPHTSCGCFEAIVFYIPE-VDG-IGIVHRGYRGETPLGLPFS---------------------TLAGQCSGGKQVPGF  330 (496)
T ss_pred             CCCCCCCCCCEEEEEEECCC-CCC-CEEEECCCCCCCCCCCCHH---------------------HHHCCCCCCEEECCE
T ss_conf             37788745642687884355-054-0037638778888887135---------------------440127887250242


Q ss_pred             -----------EEEEEECCEEEEEECCEEEEEECC
Q ss_conf             -----------999520998999989989999714
Q gi|254780764|r  159 -----------TIRECSGEWCFGYNLDTEGWIKKQ  182 (194)
Q Consensus       159 -----------~i~~~~~~W~kV~~~g~~GWV~k~  182 (194)
                                 +.+..+|+|+||-      |+.|+
T Consensus       331 ~Gisi~YmrSpKFlQaDGGw~Rvv------WlPkE  359 (496)
T TIGR00316       331 VGISISYMRSPKFLQADGGWERVV------WLPKE  359 (496)
T ss_pred             ECCCEEECCCCCCEECCCCEEEEE------ECCCH
T ss_conf             313211203775033588616878------56712


Done!