HHsearch results for GI: 254780764 and protein with PDBid: 3m1u_A
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopeptidase; structural genomics, joint center for structural genomics, JCSG; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=97.86 E-value=0.00042 Score=42.70 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=81.6
Q ss_pred EEEEECCEEEEEECCCC------------CCCC---EEEEEECCCEEEEEEEC--CCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 67830563688626898------------8630---27998369625554201--2125675325305764023346544
Q gi|254780764|r 57 FVTIKASRANSRIGPGI------------MYTV---VCTYLTKGLPVEVVKEY--ENWRQIRDFDGTIGWINKSLLSGKR 119 (194)
Q Consensus 57 ~~sik~~~vNvR~GP~~------------~y~i---~~~~~~~g~~v~vi~~~--~~W~kV~~~~g~~Gwv~~~~ls~~~ 119 (194)
..-+.....+||.=|.. .||. -......|+||.|++.. +.|+.|+. ++..|||....+....
T Consensus 116 ~~ai~v~~t~lR~~PT~~p~f~~p~~~geg~pfD~~Q~S~l~~GtPV~Ilh~S~Dg~W~~Vqt-~~y~GWV~s~~la~~d 194 (434)
T 3m1u_A 116 WKGIVVSNSALREVPTLRPMFTAPTRAGQGYPFDMFQRTAVWMGTPVFVGHATADRAWLYVET-AFAAGWMPAADVARVD 194 (434)
T ss_dssp EEEEECSCEEEESSSCSSCCBSCTTSTTTSTTCCTTEEEEECTTCEEEEEEECTTSSEEEEEC-SSCEEEEEGGGEEECC
T ss_pred CCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEEHHHEEECC
T ss_conf 534897034142168866234786656789984244323568998889999848996799967-9937827867852048
Q ss_pred CCCC---CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEECCEEEEEE-----CCEEEEEE
Q ss_conf 3333---3433343443311333179987753799738988999952099899998-----99899997
Q gi|254780764|r 120 SAIV---SPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYN-----LDTEGWIK 180 (194)
Q Consensus 120 ~~~~---~~~~~~~~~~~~lnvR~~Ps~~s~iv~~l~~g~~v~i~~~~~~W~kV~~-----~g~~GWV~ 180 (194)
.... .......+..+.++|+..+ +..+..+..|+.+.+.+...+|++|.. +|..+|..
T Consensus 195 ~~~~~~~~~~~~~~v~~~~~~l~~~~---g~~l~~l~~Gt~LPv~~~~~~~~~v~lpvr~~~G~~~~~~ 260 (434)
T 3m1u_A 195 DAFMTRYESGSLAAILRDDTSLNGAD---GTHLATAHIGTVLPLSGASQVGRTVLVPVRAPEGHAVVVP 260 (434)
T ss_dssp HHHHHHHHSSCEEEECSTTEEEECTT---SCEEEEECTTCEEEBCC-----EEEEEEEECTTSBEEEEE
T ss_pred HHHHHHHCCCCEEEEECCCCEEECCC---CCEEEEECCCCEEEEECCCCCCEEEEEEEECCCCCEEEEE
T ss_conf 88853220253389953773233588---8667885167588854046772699987675887389988