RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780764|ref|YP_003065177.1| hypothetical protein
CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
         (194 letters)



>gnl|CDD|33601 COG3807, COG3807, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 171

 Score =  182 bits (464), Expect = 4e-47
 Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 53  PLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINK 112
           PLPRFV++K++  N+R+GPG  Y V   YL KGLPVE+V+EY+NWR+IRD DGT GW+++
Sbjct: 32  PLPRFVSLKSAEVNARVGPGTDYAVEWVYLKKGLPVEIVQEYDNWRRIRDADGTEGWVHQ 91

Query: 113 SLLSGKRSAIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYN 172
           SLLSGKR+AI++PW R  +  + INL K  D  + +VAK+EPGV+ ++++C G+WC    
Sbjct: 92  SLLSGKRTAIIAPWMR--DKGVEINLRKSADDGARVVAKLEPGVVGSLKKCKGQWCRLTA 149

Query: 173 LDTEGWIKKQKIWGIYPGEVFK 194
               GWI + +IWG YPGE FK
Sbjct: 150 KGYSGWISQGEIWGAYPGERFK 171


>gnl|CDD|32917 COG3103, COG3103, SH3 domain protein [Signal transduction
           mechanisms].
          Length = 205

 Score = 32.6 bits (74), Expect = 0.064
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 66  NSRIGPGIMYTVVCTYLTKGLPVEVVKEYEN--WRQIRDFDGTIGWINKSLLSGKRSA 121
           N R GPG  Y +V + +  G  V V+    N  + QIRD  G  GWI    L+ + S+
Sbjct: 35  NVRSGPGDQYRIVGS-IKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSS 91


>gnl|CDD|34981 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
            Rho/Rac/Cdc42-like GTPases [Signal transduction
            mechanisms].
          Length = 1175

 Score = 28.1 bits (62), Expect = 1.8
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 132  NPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGIYPGE 191
            +   +   KK + + I + +V    LL   E      F + ++ +GW K+      + GE
Sbjct: 1047 DTSPLFFEKKENTKPIAIFRVSGEFLLCYSE------FAFFVNDQGWRKRTSWIFHWEGE 1100


>gnl|CDD|110105 pfam01080, Presenilin, Presenilin.  Mutations in presenilin-1 are a
           major cause of early onset Alzheimer's disease. It has
           been found that presenilin-1 binds to beta-catenin
           in-vivo. This family also contains SPE proteins from
           C.elegans.
          Length = 403

 Score = 26.3 bits (58), Expect = 5.8
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 51  KKPLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
           K PL R +   A   N  I P ++Y+     LT G   E   E       R    T    
Sbjct: 196 KGPL-RMLVETAQERNEPIFPALIYSSTVVVLTVGSNQEETNEGTPSTIRRTSKSTRSAA 254

Query: 111 NKSLLSGKRSAIVSP 125
           N        S +  P
Sbjct: 255 NPDSAPTSHSTLELP 269


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,476,157
Number of extensions: 126056
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 8
Length of query: 194
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 105
Effective length of database: 4,340,536
Effective search space: 455756280
Effective search space used: 455756280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)