RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780764|ref|YP_003065177.1| hypothetical protein
CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
         (194 letters)



>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain,
           structural genomics, protein structure initiative; NMR
           {Bacillus thuringiensis serovarkonkukian}
          Length = 70

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 58  VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116
             I AS  N R G G  Y ++   L +G  V+V+ E   W +I  ++G  G+I    LS
Sbjct: 5   YYINASALNVRSGEGTNYRII-GALPQGQKVQVISENSGWSKIN-YNGQTGYIGTRYLS 61



 Score = 35.8 bits (83), Expect = 0.006
 Identities = 6/47 (12%), Positives = 15/47 (31%)

Query: 136 INLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182
           +N+         I+  +  G  + +   +  W         G+I  +
Sbjct: 12  LNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQTGYIGTR 58


>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606,
           structural genomics, PSI-2, protein structure
           initiative; NMR {Clostridium perfringens}
          Length = 74

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 63  SRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116
           S  N R GPG  Y V+   L     VE++KE + W +IR F+G +G+ +KS ++
Sbjct: 9   SALNMRSGPGSNYGVI-GTLRNNDKVEIIKEVDGWYEIR-FNGKVGYASKSYIT 60



 Score = 37.8 bits (88), Expect = 0.002
 Identities = 6/48 (12%), Positives = 14/48 (29%)

Query: 135 YINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182
            +N+   P     ++  +     + I +    W         G+  K 
Sbjct: 10  ALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKS 57


>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium; NMR {Clostridium perfringens}
          Length = 76

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 62  ASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSA 121
           +S  N R G      V+   L+    V +V E   + +I  + G+ G++ K  +   +  
Sbjct: 10  SSSLNVREGASTSSKVI-GSLSGNTKVTIVGEEGAFYKIE-YKGSHGYVAKEYIKDIKDE 67

Query: 122 IV 123
           ++
Sbjct: 68  VL 69



 Score = 38.3 bits (89), Expect = 0.001
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 131 NNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182
           N    +N+ +     S ++  +     +TI    G +       + G++ K+
Sbjct: 8   NVSSSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKE 59


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.005
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 59/145 (40%)

Query: 34  FYLAPILAL---------SHEKEIFEKKPLPRFVTIKASRANSRIGPGIMYTVVCTYLTK 84
           F+++   A+          +E   +    LP    ++ S  N+   P  M ++       
Sbjct: 292 FFVSVRKAITVLFFIGVRCYE--AYPNTSLP-PSILEDSLENNEGVPSPMLSI------S 342

Query: 85  GLPVEVVKEYENWRQIRDFDGTIGWINK----------SLLSGKRSAIVS-PWNRKTNNP 133
            L  E V++Y            +   N           SL++G ++ +VS P       P
Sbjct: 343 NLTQEQVQDY------------VNKTNSHLPAGKQVEISLVNGAKNLVVSGP-------P 383

Query: 134 I--Y-INLY----KKP---DIQSII 148
              Y +NL     K P   D QS I
Sbjct: 384 QSLYGLNLTLRKAKAPSGLD-QSRI 407



 Score = 30.3 bits (68), Expect = 0.27
 Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 41/94 (43%)

Query: 134 IYINLYKKPDIQSII--VAKVEPGVL--LTIRECSGEWCFGYNLDTEGWIKK-------- 181
           +Y   Y    +  +I   A+     L  L       E  F   L+   W++         
Sbjct: 176 LY-QTYH-VLVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229

Query: 182 ---------------Q--------KIWGIYPGEV 192
                          Q        K+ G  PGE+
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263


>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein,
           structural genomics, joint center for structural
           genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus
           atcc 10987}
          Length = 311

 Score = 34.4 bits (78), Expect = 0.018
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 19/115 (16%)

Query: 85  GLPVEVVKEYENWRQIR--------DFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYI 136
           G  V VV +  +W ++         + +G  GW+ +  L+         +  KTN P  +
Sbjct: 67  GQEVTVVDKKGDWVKVLVHGQPTPRNEEGYPGWMPEKQLT-----YNQEFADKTNEPFVL 121

Query: 137 ------NLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIW 185
                  LY  P  +   +       L  + E +  +        + W++K    
Sbjct: 122 VTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGT 176


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.3 bits (72), Expect = 0.070
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 17/40 (42%)

Query: 14 LRKYMPKILQNSLIFTLAIYFYL---APILALSHEKEIFE 50
          L+K     LQ SL        Y    AP LA+   K   E
Sbjct: 22 LKK-----LQASL------KLYADDSAPALAI---KATME 47


>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein
           structure initiative, joint center for structural
           genomics; HET: UNL; 1.05A {Anabaena variabilis atcc
           29413} PDB: 2evr_A 2fg0_A
          Length = 235

 Score = 29.7 bits (66), Expect = 0.43
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 80  TYLTKGLPVEVVKEYEN-WRQIR-DFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYIN 137
           T    G  ++V    +    ++    D   GW++   L   + A V    +         
Sbjct: 37  TQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLKPATVLYQAK--------- 87

Query: 138 LYKKPDIQSIIVAKVE 153
            + + +I+ ++   + 
Sbjct: 88  SFSESEIKKLLPGAIA 103



 Score = 27.8 bits (61), Expect = 1.5
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 114 LLSGKRSAIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECS-GEWCFGYN 172
           +LS   S+I SP + +      +NLY  P+  S +  +   G  L +     G       
Sbjct: 2   MLSNLESSIQSPKSGEYQCLAALNLYDSPECTS-LATQAAVGRHLQVTSNQQGAAVEVCL 60

Query: 173 L--DTEGWIKKQKIWGIYP 189
              D  GW+    +  + P
Sbjct: 61  CEDDYPGWLSLGDLGLLKP 79


>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
           protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
           b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1
          Length = 605

 Score = 27.8 bits (61), Expect = 1.9
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 83  TKGLPVEVVKE----YENWRQIRDFDGTIGWINKSLLSGKR 119
            K   + V  +     + W +IR     IGW   + L  ++
Sbjct: 557 YKNQKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANLRAQK 597


>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
           NADPH oxidase, oxidoreductase activator; 1.70A {Homo
           sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
           1wlp_B
          Length = 193

 Score = 27.5 bits (60), Expect = 2.0
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 1/99 (1%)

Query: 82  LTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYINLYKK 141
           L+ G  VEVV++ E+           GWI  S L    S   +               K 
Sbjct: 30  LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKA 89

Query: 142 PDIQSIIVAKVEPGVLLT-IRECSGEWCFGYNLDTEGWI 179
                     +  G  +  I +    W      D  G+ 
Sbjct: 90  YTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYF 128


>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
           {Homo sapiens} PDB: 2js2_A
          Length = 67

 Score = 27.1 bits (60), Expect = 2.5
 Identities = 4/29 (13%), Positives = 15/29 (51%)

Query: 82  LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
           + K   + ++ + + W ++R+     G++
Sbjct: 23  IKKNERLWLLDDSKTWWRVRNAANRTGYV 51


>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
           SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
           2rol_A
          Length = 68

 Score = 26.7 bits (59), Expect = 3.2
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 69  IGPGIMYTVVCTY-----------LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
           +G G +  V+C Y           + +   +EV+ +   W ++RD  G  G++
Sbjct: 3   LGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYV 55


>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain; 1.80A
           {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
          Length = 326

 Score = 26.4 bits (58), Expect = 4.5
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 136 INLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIW 185
           + +  K D +S  +   + G  L + E +  W   Y  D   +I K    
Sbjct: 204 VPMLSKMDFKSSPIKMYKAGSSLLVYEHNKYWYKAYINDKLCYIYKSFCI 253


>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
           protein-protein interaction, structural genomics; NMR
           {Homo sapiens}
          Length = 68

 Score = 25.9 bits (57), Expect = 5.8
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 82  LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
           + +G  +EV+   + W  +++  G  G+I
Sbjct: 26  VVQGEKLEVLDHSKRWWLVKNEAGRSGYI 54


>2vkn_A Protein SSU81; peptide, membrane, SH3 domain, transmembrane,
           membrane protein; 2.05A {Saccharomyces cerevisiae}
          Length = 70

 Score = 25.9 bits (57), Expect = 6.5
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 82  LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
             +   ++V      W + R  +G  G I
Sbjct: 26  FEQNEILQVSDIEGRWWKARRANGETGII 54


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0481    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,778,793
Number of extensions: 79922
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 22
Length of query: 194
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 107
Effective length of database: 3,584,002
Effective search space: 383488214
Effective search space used: 383488214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)