RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780764|ref|YP_003065177.1| hypothetical protein CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62] (194 letters) >2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian} Length = 70 Score = 56.3 bits (136), Expect = 5e-09 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116 I AS N R G G Y ++ L +G V+V+ E W +I ++G G+I LS Sbjct: 5 YYINASALNVRSGEGTNYRII-GALPQGQKVQVISENSGWSKIN-YNGQTGYIGTRYLS 61 Score = 35.8 bits (83), Expect = 0.006 Identities = 6/47 (12%), Positives = 15/47 (31%) Query: 136 INLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182 +N+ I+ + G + + + W G+I + Sbjct: 12 LNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQTGYIGTR 58 >2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens} Length = 74 Score = 51.7 bits (124), Expect = 1e-07 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 63 SRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116 S N R GPG Y V+ L VE++KE + W +IR F+G +G+ +KS ++ Sbjct: 9 SALNMRSGPGSNYGVI-GTLRNNDKVEIIKEVDGWYEIR-FNGKVGYASKSYIT 60 Score = 37.8 bits (88), Expect = 0.002 Identities = 6/48 (12%), Positives = 14/48 (29%) Query: 135 YINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182 +N+ P ++ + + I + W G+ K Sbjct: 10 ALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKS 57 >2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} Length = 76 Score = 50.6 bits (121), Expect = 2e-07 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 62 ASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSA 121 +S N R G V+ L+ V +V E + +I + G+ G++ K + + Sbjct: 10 SSSLNVREGASTSSKVI-GSLSGNTKVTIVGEEGAFYKIE-YKGSHGYVAKEYIKDIKDE 67 Query: 122 IV 123 ++ Sbjct: 68 VL 69 Score = 38.3 bits (89), Expect = 0.001 Identities = 8/52 (15%), Positives = 20/52 (38%) Query: 131 NNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182 N +N+ + S ++ + +TI G + + G++ K+ Sbjct: 8 NVSSSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKE 59 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.005 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 59/145 (40%) Query: 34 FYLAPILAL---------SHEKEIFEKKPLPRFVTIKASRANSRIGPGIMYTVVCTYLTK 84 F+++ A+ +E + LP ++ S N+ P M ++ Sbjct: 292 FFVSVRKAITVLFFIGVRCYE--AYPNTSLP-PSILEDSLENNEGVPSPMLSI------S 342 Query: 85 GLPVEVVKEYENWRQIRDFDGTIGWINK----------SLLSGKRSAIVS-PWNRKTNNP 133 L E V++Y + N SL++G ++ +VS P P Sbjct: 343 NLTQEQVQDY------------VNKTNSHLPAGKQVEISLVNGAKNLVVSGP-------P 383 Query: 134 I--Y-INLY----KKP---DIQSII 148 Y +NL K P D QS I Sbjct: 384 QSLYGLNLTLRKAKAPSGLD-QSRI 407 Score = 30.3 bits (68), Expect = 0.27 Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 41/94 (43%) Query: 134 IYINLYKKPDIQSII--VAKVEPGVL--LTIRECSGEWCFGYNLDTEGWIKK-------- 181 +Y Y + +I A+ L L E F L+ W++ Sbjct: 176 LY-QTYH-VLVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229 Query: 182 ---------------Q--------KIWGIYPGEV 192 Q K+ G PGE+ Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263 >3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} Length = 311 Score = 34.4 bits (78), Expect = 0.018 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 19/115 (16%) Query: 85 GLPVEVVKEYENWRQIR--------DFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYI 136 G V VV + +W ++ + +G GW+ + L+ + KTN P + Sbjct: 67 GQEVTVVDKKGDWVKVLVHGQPTPRNEEGYPGWMPEKQLT-----YNQEFADKTNEPFVL 121 Query: 137 ------NLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIW 185 LY P + + L + E + + + W++K Sbjct: 122 VTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGT 176 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.070 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 17/40 (42%) Query: 14 LRKYMPKILQNSLIFTLAIYFYL---APILALSHEKEIFE 50 L+K LQ SL Y AP LA+ K E Sbjct: 22 LKK-----LQASL------KLYADDSAPALAI---KATME 47 >2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A Length = 235 Score = 29.7 bits (66), Expect = 0.43 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 11/76 (14%) Query: 80 TYLTKGLPVEVVKEYEN-WRQIR-DFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYIN 137 T G ++V + ++ D GW++ L + A V + Sbjct: 37 TQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLKPATVLYQAK--------- 87 Query: 138 LYKKPDIQSIIVAKVE 153 + + +I+ ++ + Sbjct: 88 SFSESEIKKLLPGAIA 103 Score = 27.8 bits (61), Expect = 1.5 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Query: 114 LLSGKRSAIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECS-GEWCFGYN 172 +LS S+I SP + + +NLY P+ S + + G L + G Sbjct: 2 MLSNLESSIQSPKSGEYQCLAALNLYDSPECTS-LATQAAVGRHLQVTSNQQGAAVEVCL 60 Query: 173 L--DTEGWIKKQKIWGIYP 189 D GW+ + + P Sbjct: 61 CEDDYPGWLSLGDLGLLKP 79 >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 Length = 605 Score = 27.8 bits (61), Expect = 1.9 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%) Query: 83 TKGLPVEVVKE----YENWRQIRDFDGTIGWINKSLLSGKR 119 K + V + + W +IR IGW + L ++ Sbjct: 557 YKNQKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANLRAQK 597 >1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoreductase activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193 Score = 27.5 bits (60), Expect = 2.0 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 1/99 (1%) Query: 82 LTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRSAIVSPWNRKTNNPIYINLYKK 141 L+ G VEVV++ E+ GWI S L S + K Sbjct: 30 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKA 89 Query: 142 PDIQSIIVAKVEPGVLLT-IRECSGEWCFGYNLDTEGWI 179 + G + I + W D G+ Sbjct: 90 YTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYF 128 >2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67 Score = 27.1 bits (60), Expect = 2.5 Identities = 4/29 (13%), Positives = 15/29 (51%) Query: 82 LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110 + K + ++ + + W ++R+ G++ Sbjct: 23 IKKNERLWLLDDSKTWWRVRNAANRTGYV 51 >2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68 Score = 26.7 bits (59), Expect = 3.2 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Query: 69 IGPGIMYTVVCTY-----------LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110 +G G + V+C Y + + +EV+ + W ++RD G G++ Sbjct: 3 LGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYV 55 >1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6 Length = 326 Score = 26.4 bits (58), Expect = 4.5 Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 136 INLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIW 185 + + K D +S + + G L + E + W Y D +I K Sbjct: 204 VPMLSKMDFKSSPIKMYKAGSSLLVYEHNKYWYKAYINDKLCYIYKSFCI 253 >1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68 Score = 25.9 bits (57), Expect = 5.8 Identities = 7/29 (24%), Positives = 16/29 (55%) Query: 82 LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110 + +G +EV+ + W +++ G G+I Sbjct: 26 VVQGEKLEVLDHSKRWWLVKNEAGRSGYI 54 >2vkn_A Protein SSU81; peptide, membrane, SH3 domain, transmembrane, membrane protein; 2.05A {Saccharomyces cerevisiae} Length = 70 Score = 25.9 bits (57), Expect = 6.5 Identities = 6/29 (20%), Positives = 11/29 (37%) Query: 82 LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110 + ++V W + R +G G I Sbjct: 26 FEQNEILQVSDIEGRWWKARRANGETGII 54 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.441 Gapped Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,778,793 Number of extensions: 79922 Number of successful extensions: 239 Number of sequences better than 10.0: 1 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 22 Length of query: 194 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 107 Effective length of database: 3,584,002 Effective search space: 383488214 Effective search space used: 383488214 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.2 bits)