BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780764|ref|YP_003065177.1| hypothetical protein
CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
(194 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780764|ref|YP_003065177.1| hypothetical protein CLIBASIA_03275 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 194
Score = 397 bits (1021), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MFTHAEKILYSLDLRKYMPKILQNSLIFTLAIYFYLAPILALSHEKEIFEKKPLPRFVTI 60
MFTHAEKILYSLDLRKYMPKILQNSLIFTLAIYFYLAPILALSHEKEIFEKKPLPRFVTI
Sbjct: 1 MFTHAEKILYSLDLRKYMPKILQNSLIFTLAIYFYLAPILALSHEKEIFEKKPLPRFVTI 60
Query: 61 KASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRS 120
KASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRS
Sbjct: 61 KASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSGKRS 120
Query: 121 AIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIK 180
AIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIK
Sbjct: 121 AIVSPWNRKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIK 180
Query: 181 KQKIWGIYPGEVFK 194
KQKIWGIYPGEVFK
Sbjct: 181 KQKIWGIYPGEVFK 194
>gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 311
Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 5 AEKILYSLDL-RKYMPKILQNSLIFTLAIYF 34
+ YSLDL K++P+I Q SLI T ++
Sbjct: 171 SNHFFYSLDLLHKHLPEITQYSLIKTSPMFL 201
>gi|254780692|ref|YP_003065105.1| hypothetical protein CLIBASIA_02895 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 72
Score = 22.7 bits (47), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 72 GIMYTVVCTYLTKGLPVE 89
GI++T++C Y+ G E
Sbjct: 6 GIIFTIICLYMMNGYQKE 23
>gi|254781031|ref|YP_003065444.1| exsB protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 240
Score = 21.9 bits (45), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 53 PLPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDG 105
P R TI+A +G + +++T P+ +K+YE W+ +D G
Sbjct: 144 PDCRHDTIRAIETAINLG-------MESHVTVHTPLMWLKKYETWKLAQDIGG 189
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,058
Number of Sequences: 1233
Number of extensions: 5126
Number of successful extensions: 14
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 328,796
effective HSP length: 69
effective length of query: 125
effective length of database: 243,719
effective search space: 30464875
effective search space used: 30464875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)