HHsearch alignment for GI: 254780765 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=99.61 E-value=3.9e-14 Score=108.48 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=140.0
Q ss_pred EEEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCC---CCCCCCCCCCC
Q ss_conf 9998177678889-------8850000067226689999999679986999868--3300010001---22222222223
Q gi|254780765|r 11 LVIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQ---AGFESVMTHTS 78 (268)
Q Consensus 11 ~~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~---~g~~~i~t~~~ 78 (268)
T Consensus 3 kavILagG~GtRLrPlT~~~P-KPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~ 81 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRP-KPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK 81 (358)
T ss_pred EEEEECCCCCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 599994665666355448997-4465799864599999999987997899987746899999986263569865997168
Q ss_pred CCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf 45652-04899997422334521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r 79 HQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 79 ~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~ 157 (268)
T Consensus 82 ~~lGTag~l~~a~~~l~~----~~f~v~~GDv~-~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~---G---vv~~~~ 149 (358)
T COG1208 82 EPLGTAGALKNALDLLGG----DDFLVLNGDVL-TDLD-LSELLEFHKKKGALATIALTRVLDPSEF---G---VVETDD 149 (358)
T ss_pred CCCCCHHHHHHHHHHHCC----CCEEEEECCCC-CCCC-HHHHHHHHHHCCCCCEEEEEECCCCCCC---C---EEEECC
T ss_conf 766648999999886079----97899978862-2468-8999999873566427998752776558---6---399759
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCCEEEEEEECCCCCCCC
Q ss_conf 4442001111035777531112235201355200233333207998211120844798-997896266998458888768
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARMRIDVKIVQSNAMSVD 236 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~~I~~~~~~~~~~~ID 236 (268)
T Consensus 150 ~~---~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~----~~~~~l~~~~~~v~~~~~~g~W~dig 222 (358)
T COG1208 150 GD---GRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEE----ELLPALAAKGEDVYGYVFEGYWLDIG 222 (358)
T ss_pred CC---CEEEEEEECCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCCCHH----HHHHHHHHCCCCEEEEEECCEEEECC
T ss_conf 98---489889972667678886699999998978943013357432147----78999987699569997578799699
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
T Consensus 223 ~p~d~~~a~~~~~~ 236 (358)
T COG1208 223 TPEDLLEANELLLR 236 (358)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999985