HHsearch alignment for GI: 254780765 and conserved domain: COG1211
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=99.35 E-value=1.6e-11 Score=92.20 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=131.9
Q ss_pred CCCCEEEEEECCCCCCCC----CCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCC---CCHHHHCC---CCCCCCCC
Q ss_conf 556569998177678889----8850000067226689999999679-9869998683---30001000---12222222
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRF----PKKILADINGLPMILHTAIRARKAN-IGRVIVAVDD---TKINEIVL---QAGFESVM 74 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rl----p~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd---~~I~~~~~---~~g~~~i~ 74 (268)
T Consensus 1 ~~~~~~~vilAaG~G~R~~~~~p-Kq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~~~~~~~v~~v- 78 (230)
T COG1211 1 MRMMVSAVILAAGFGSRMGNPVP-KQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVV- 78 (230)
T ss_pred CCCEEEEEEECCCCCCCCCCCCC-CEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEE-
T ss_conf 97407999975763433579998-4588999988569999999747676769999784664899986321248707993-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf 2223456520489999742233--45210000152210100000122333210134432111111220110037544314
Q gi|254780765|r 75 THTSHQSGSDRIFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI 152 (268)
Q Consensus 75 t~~~~~~GTdRi~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv 152 (268)
T Consensus 79 -----~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~alpv~DTi--------k~ 143 (230)
T COG1211 79 -----KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILALPVTDTL--------KR 143 (230)
T ss_pred -----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCCEEEEEECCCCE--------EE
T ss_conf -----48751799999999972115898899964666789999999999862--2388179975046737--------88
Q ss_pred EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEEECCC
Q ss_conf 65145444200111103577753111223520135520023333320799821112084479899-78962669984588
Q gi|254780765|r 153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKIVQSN 231 (268)
Q Consensus 153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~~~~~ 231 (268)
T Consensus 144 ~~-~~~----~i~~t~~R-------~~l~~~QTPQ~F~~~~L~~a~~~a--~~~~~~~tDdas~~e~~G~~v~lV~G~~~ 209 (230)
T COG1211 144 VD-ADG----NIVETVDR-------SGLWAAQTPQAFRLELLKQALARA--FAEGREITDDASAIEKAGGPVSLVEGSAD 209 (230)
T ss_pred EC-CCC----CEEECCCH-------HHHHHHHCCCCCCHHHHHHHHHHH--HHCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 65-898----72344375-------542343387633199999999999--86287768869999876998199826833
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 8876899999999999730
Q gi|254780765|r 232 AMSVDTTNDLEKVRTLIPH 250 (268)
Q Consensus 232 ~~~IDt~~Dl~~v~~il~~ 250 (268)
T Consensus 210 n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 210 NFKITTPEDLEIAEAILRR 228 (230)
T ss_pred EEEECCHHHHHHHHHHHCC
T ss_conf 0576288899999987526