HHsearch alignment for GI: 254780765 and conserved domain: COG1212
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=518.21 Aligned_cols=239 Identities=47% Similarity=0.709 Sum_probs=228.4
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 56569998177678889885000006722668999999967998699986833000100012222222222345652048
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
T Consensus 1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR~ 80 (247)
T COG1212 1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRL 80 (247)
T ss_pred CCCEEEEEECCHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCCCCCHHH
T ss_conf 98559998542002668997357737960789999999873787289974988999999970978996178889800899
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 99997422334521000015221010000012233321013443211111122011003754431465145444200111
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~al 166 (268)
T Consensus 81 ~Ev~~~l~~~-~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~-----g~AL 154 (247)
T COG1212 81 AEVVEKLGLP-DDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE-----GYAL 154 (247)
T ss_pred HHHHHHCCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCEEEEECCC-----CCEE
T ss_conf 9999965999-642999865887777979999999998737766045534337888845998279997599-----8289
Q ss_pred HCCCCCCCCCCC-----CCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCC-CCCCCCHHH
Q ss_conf 103577753111-----22352013552002333332079982111208447989978962669984588-887689999
Q gi|254780765|r 167 YFTRTKTPHGTG-----PFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDTTND 240 (268)
Q Consensus 167 yfsR~~ip~~~~-----~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~-~~~IDt~~D 240 (268)
T Consensus 155 YFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~ED 234 (247)
T COG1212 155 YFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPED 234 (247)
T ss_pred EEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 98768787754346776436422058867999999970699605678778999998769757899841688889898899
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999997307
Q gi|254780765|r 241 LEKVRTLIPHD 251 (268)
Q Consensus 241 l~~v~~il~~~ 251 (268)
T Consensus 235 Le~v~~~~~~~ 245 (247)
T COG1212 235 LERVRKILSNN 245 (247)
T ss_pred HHHHHHHHHHH
T ss_conf 99999998751