HHsearch alignment for GI: 254780765 and conserved domain: PRK00155
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed.
Probab=99.67 E-value=1.8e-15 Score=116.87 Aligned_cols=214 Identities=15% Similarity=0.196 Sum_probs=132.7
Q ss_pred CCCCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCCCCCCCCCCCC
Q ss_conf 55656999817767888988---50000067226689999999679-986999868330---001000122222222223
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQAGFESVMTHTS 78 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~g~~~i~t~~~ 78 (268)
T Consensus 1 ~m~~i~aIIlAaG~G~R~g~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~IvvV~~~~~~~~~~~~~~~~~~~i~~---- 76 (228)
T PRK00155 1 MMPMVYAIIPAAGIGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPAIDEIIVVVPPDDTEYAKLLLAKFDKRIKV---- 76 (228)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE----
T ss_conf 9875799993772051378679965566895699999999997599989799995762699999998744985799----
Q ss_pred CCCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH-HCCCCCCCEEEE
Q ss_conf 4565204---899997422334521000015221010000012233321013443211111122011-003754431465
Q gi|254780765|r 79 HQSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST-DPDDPNIVKIVV 154 (268)
Q Consensus 79 ~~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~-~~~d~n~vKvi~ 154 (268)
T Consensus 77 v~GG~tR~~Sv~ngL~~l~---~~~~VlIHDaARP~is~~~i~~li~~~~~--~~~~ip~~p~~DTik~~~~~~~i~~tl 151 (228)
T PRK00155 77 VAGGAERQDSVLNGLQALP---DDDWVLVHDAARPFLTPDDIDRLIEAAEE--YGAAILAVPVRDTIKRVDAGGFIVDTP 151 (228)
T ss_pred ECCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCCCEEEECCCCCEEEEC
T ss_conf 7697039999999999840---39979997066768999999999999984--698469876024178965898155303
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 145444200111103577753111223520135520023333-3207998211120844798997896266998458888
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAM 233 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~ 233 (268)
T Consensus 152 --------------~R-------~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl--~~~~g~~v~~v~G~~~N~ 208 (228)
T PRK00155 152 --------------DR-------SGLWAAQTPQGFRVELLKEALARALAEGFTITDDASA--VEWLGKPVRLVEGRYDNI 208 (228)
T ss_pred --------------CC-------HHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCCC
T ss_conf --------------51-------4436652885325999999999998759987789999--998699769996685437
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 768999999999997307
Q gi|254780765|r 234 SVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 234 ~IDt~~Dl~~v~~il~~~ 251 (268)
T Consensus 209 KIT~~eDL~~ae~ll~~r 226 (228)
T PRK00155 209 KVTTPEDLALAEAILKRR 226 (228)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 728999999999999853