HHsearch alignment for GI: 254780765 and conserved domain: PRK05450

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=100.00  E-value=0  Score=537.74  Aligned_cols=237  Identities=49%  Similarity=0.717  Sum_probs=222.5

Q ss_pred             CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             65699981776788898850000067226689999999679-98699986833000100012222222222345652048
Q gi|254780765|r    8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI   86 (268)
Q Consensus         8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi   86 (268)
T Consensus         1 Mk~~~iIPAR~~SsR~PgKpL~~I~GkpmI~~v~~~a~~~~~~~~V~VATdd~~I~~~~~~~g~~~imTs~~h~~GTdRi   80 (248)
T PRK05450          1 MKFVVIIPARYASTRLPGKPLADIGGKPMIVRVYERASKASGADRVVVATDDERIADAVEAFGGEVVMTSADHPSGTDRI   80 (248)
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf             97799980797787899862024189698999999999668988299970885244353156862340464547703899


Q ss_pred             HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf             999974223345210000152210100000122333210-1344321111112201100375443146514544420011
Q gi|254780765|r   87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA  165 (268)
Q Consensus        87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a  165 (268)
T Consensus        81 ~Ea~~~l~~-~~~d~IInvQGDEPli~p~~I~~li~~~~~~~~~~i~tl~~~~~~~~~~~d~n~VKvv~~~~~-----~a  154 (248)
T PRK05450         81 AEAAAKLGL-SDDDIVVNVQGDEPLIPPELIDQVAEPLAAHPEADMATLAVPIDDEEELFNPNVVKVVLDKNG-----YA  154 (248)
T ss_pred             HHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEEECCCC-----CE
T ss_conf             999985087-778689993598677899999999999985886639999986288899608883489989999-----84


Q ss_pred             HHCCCCCCCCCC--------CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf             110357775311--------12235201355200233333207998211120844798997896266998458-888768
Q gi|254780765|r  166 LYFTRTKTPHGT--------GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD  236 (268)
Q Consensus       166 lyfsR~~ip~~~--------~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID  236 (268)
T Consensus       155 lyfSRs~IP~~~~~~~~~~~~~~~~hiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~~VD  234 (248)
T PRK05450        155 LYFSRAPIPWGRDAADPTAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEQIESLEQLRALENGYRIHVAVVDEAPSPGVD  234 (248)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             05542678754443212355551689998860099999987469981465652699999985995799996789999977


Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             99999999999730
Q gi|254780765|r  237 TTNDLEKVRTLIPH  250 (268)
Q Consensus       237 t~~Dl~~v~~il~~  250 (268)
T Consensus       235 T~eDl~~v~~~lkk  248 (248)
T PRK05450        235 TPEDLERVRALLAK  248 (248)
T ss_pred             CHHHHHHHHHHHCC
T ss_conf             99999999998666