HHsearch alignment for GI: 254780765 and conserved domain: PRK05450
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=100.00 E-value=0 Score=537.74 Aligned_cols=237 Identities=49% Similarity=0.717 Sum_probs=222.5
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 65699981776788898850000067226689999999679-98699986833000100012222222222345652048
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
T Consensus 1 Mk~~~iIPAR~~SsR~PgKpL~~I~GkpmI~~v~~~a~~~~~~~~V~VATdd~~I~~~~~~~g~~~imTs~~h~~GTdRi 80 (248)
T PRK05450 1 MKFVVIIPARYASTRLPGKPLADIGGKPMIVRVYERASKASGADRVVVATDDERIADAVEAFGGEVVMTSADHPSGTDRI 80 (248)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 97799980797787899862024189698999999999668988299970885244353156862340464547703899
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 999974223345210000152210100000122333210-1344321111112201100375443146514544420011
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
T Consensus 81 ~Ea~~~l~~-~~~d~IInvQGDEPli~p~~I~~li~~~~~~~~~~i~tl~~~~~~~~~~~d~n~VKvv~~~~~-----~a 154 (248)
T PRK05450 81 AEAAAKLGL-SDDDIVVNVQGDEPLIPPELIDQVAEPLAAHPEADMATLAVPIDDEEELFNPNVVKVVLDKNG-----YA 154 (248)
T ss_pred HHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEEECCCC-----CE
T ss_conf 999985087-778689993598677899999999999985886639999986288899608883489989999-----84
Q ss_pred HHCCCCCCCCCC--------CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 110357775311--------12235201355200233333207998211120844798997896266998458-888768
Q gi|254780765|r 166 LYFTRTKTPHGT--------GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 166 lyfsR~~ip~~~--------~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID 236 (268)
T Consensus 155 lyfSRs~IP~~~~~~~~~~~~~~~~hiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~~VD 234 (248)
T PRK05450 155 LYFSRAPIPWGRDAADPTAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEQIESLEQLRALENGYRIHVAVVDEAPSPGVD 234 (248)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 05542678754443212355551689998860099999987469981465652699999985995799996789999977
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
T Consensus 235 T~eDl~~v~~~lkk 248 (248)
T PRK05450 235 TPEDLERVRALLAK 248 (248)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 99999999998666