HHsearch alignment for GI: 254780765 and conserved domain: PRK13368
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=100.00 E-value=0 Score=510.31 Aligned_cols=232 Identities=42% Similarity=0.667 Sum_probs=220.0
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 65699981776788898850000067226689999999679-98699986833000100012222222222345652048
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
T Consensus 1 Mk~~~iIPAR~~S~R~p~K~L~~i~g~pmi~~v~~~a~~s~~~d~v~VaTdd~eI~~~~k~~g~~~i~ts~~~~~GTdRi 80 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL 80 (238)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 97899984687787899870125289699999999998468988299956842487775004632785156557714789
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 9999742233452100001522101000001223332101-344321111112201100375443146514544420011
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN-PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~-~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
T Consensus 81 ~Ea~~~~----~~d~ivnvQgDePli~p~~I~~~i~~~~~~~~~~v~t~~~~~~~~~~~~n~n~vKvv~~~~~-----~~ 151 (238)
T PRK13368 81 AEVMLKI----EADIYINVQGDEPLIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNG-----DA 151 (238)
T ss_pred HHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCEEEEECCCC-----CC
T ss_conf 9998515----98789995388677899999999999983776527678741688888438985299989978-----70
Q ss_pred HHCCCCCCCCCC----CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 110357775311----1223520135520023333320799821112084479899789626699845888876899999
Q gi|254780765|r 166 LYFTRTKTPHGT----GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL 241 (268)
Q Consensus 166 lyfsR~~ip~~~----~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl 241 (268)
T Consensus 152 lyfSR~~ip~~~~~~~~~~~khiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~VDt~eDl 231 (238)
T PRK13368 152 LYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGYKIRMVEVEATSIGVDTPEDL 231 (238)
T ss_pred CCCCCCCCCCCCCCCCCHHHEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 11452567511245420122030112211999999870899856777708999999869926799959999998799999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780765|r 242 EKVRTLI 248 (268)
Q Consensus 242 ~~v~~il 248 (268)
T Consensus 232 ~~v~kim 238 (238)
T PRK13368 232 ERVRAIM 238 (238)
T ss_pred HHHHHHC
T ss_conf 9999859