HHsearch alignment for GI: 254780765 and conserved domain: PRK13385

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.
Probab=99.52  E-value=5e-13  Score=101.56  Aligned_cols=214  Identities=18%  Similarity=0.199  Sum_probs=128.5

Q ss_pred             CCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCC---CHHHHCCCCCC-----CCCCC
Q ss_conf             656999817767888988---5000006722668999999967-998699986833---00010001222-----22222
Q gi|254780765|r    8 EKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKA-NIGRVIVAVDDT---KINEIVLQAGF-----ESVMT   75 (268)
Q Consensus         8 ~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~---~I~~~~~~~g~-----~~i~t   75 (268)
T Consensus         1 M~~~~IilAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv--   78 (238)
T PRK13385          1 MNYELIFLAAGQGKMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVV--   78 (238)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE--
T ss_conf             956999977734614886899643279978899999999855876787999677888999999998615444768993--


Q ss_pred             CCCCCCCCHH---HHHHHHHHCC---CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf             2234565204---8999974223---345210000152210100000122333210134432111111220110037544
Q gi|254780765|r   76 HTSHQSGSDR---IFEALNIIDS---DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNI  149 (268)
Q Consensus        76 ~~~~~~GTdR---i~ea~~~l~~---~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~  149 (268)
T Consensus        79 ----~GG~tR~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~-~~~~~~~~~dti~~~~~~~  153 (238)
T PRK13385         79 ----AGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGA-VDTVIEAIDTIVMSKDKQN  153 (238)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCEEEEECCCC
T ss_conf             ----28986489999999998741147876889995466778999999999999872197-3799961344599926995


Q ss_pred             -CEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEE
Q ss_conf             -31465145444200111103577753111223520135520023333-3207998211120844798997896266998
Q gi|254780765|r  150 -VKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKI  227 (268)
Q Consensus       150 -vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~  227 (268)
T Consensus       154 i~~t~-d-------R~~l--~~~QTP------------Q~F~~~~L~~a~~~~~~~~~~~~TD-dasl~e~~g~~v~~v~  210 (238)
T PRK13385        154 IHSIP-V-------RNEM--YQGQTP------------QSFNIKLLQDSYRALSSEQKEILSD-ACKIIVESGHPVKLVR  210 (238)
T ss_pred             EEECC-C-------HHHH--HHHCCC------------CCCCHHHHHHHHHHHHHCCCCCCCC-HHHHHHHCCCCEEEEE
T ss_conf             24126-8-------7882--000299------------6135999999999998628998888-9999987799669996


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             458888768999999999997307
Q gi|254780765|r  228 VQSNAMSVDTTNDLEKVRTLIPHD  251 (268)
Q Consensus       228 ~~~~~~~IDt~~Dl~~v~~il~~~  251 (268)
T Consensus       211 G~~~NiKIT~~eDL~~a~~ll~~~  234 (238)
T PRK13385        211 GELYNIKVTTPYDLKVANAIIQGD  234 (238)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             696347799899999999997546