HHsearch alignment for GI: 254780765 and conserved domain: PRK13385
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.
Probab=99.52 E-value=5e-13 Score=101.56 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=128.5
Q ss_pred CCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCC---CHHHHCCCCCC-----CCCCC
Q ss_conf 656999817767888988---5000006722668999999967-998699986833---00010001222-----22222
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKA-NIGRVIVAVDDT---KINEIVLQAGF-----ESVMT 75 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~---~I~~~~~~~g~-----~~i~t 75 (268)
T Consensus 1 M~~~~IilAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv-- 78 (238)
T PRK13385 1 MNYELIFLAAGQGKMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVV-- 78 (238)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE--
T ss_conf 956999977734614886899643279978899999999855876787999677888999999998615444768993--
Q ss_pred CCCCCCCCHH---HHHHHHHHCC---CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 2234565204---8999974223---345210000152210100000122333210134432111111220110037544
Q gi|254780765|r 76 HTSHQSGSDR---IFEALNIIDS---DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNI 149 (268)
Q Consensus 76 ~~~~~~GTdR---i~ea~~~l~~---~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~ 149 (268)
T Consensus 79 ----~GG~tR~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~-~~~~~~~~~dti~~~~~~~ 153 (238)
T PRK13385 79 ----AGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGA-VDTVIEAIDTIVMSKDKQN 153 (238)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCEEEEECCCC
T ss_conf ----28986489999999998741147876889995466778999999999999872197-3799961344599926995
Q ss_pred -CEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEE
Q ss_conf -31465145444200111103577753111223520135520023333-3207998211120844798997896266998
Q gi|254780765|r 150 -VKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKI 227 (268)
Q Consensus 150 -vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~ 227 (268)
T Consensus 154 i~~t~-d-------R~~l--~~~QTP------------Q~F~~~~L~~a~~~~~~~~~~~~TD-dasl~e~~g~~v~~v~ 210 (238)
T PRK13385 154 IHSIP-V-------RNEM--YQGQTP------------QSFNIKLLQDSYRALSSEQKEILSD-ACKIIVESGHPVKLVR 210 (238)
T ss_pred EEECC-C-------HHHH--HHHCCC------------CCCCHHHHHHHHHHHHHCCCCCCCC-HHHHHHHCCCCEEEEE
T ss_conf 24126-8-------7882--000299------------6135999999999998628998888-9999987799669996
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 458888768999999999997307
Q gi|254780765|r 228 VQSNAMSVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 228 ~~~~~~~IDt~~Dl~~v~~il~~~ 251 (268)
T Consensus 211 G~~~NiKIT~~eDL~~a~~ll~~~ 234 (238)
T PRK13385 211 GELYNIKVTTPYDLKVANAIIQGD 234 (238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 696347799899999999997546