HHsearch alignment for GI: 254780765 and conserved domain: TIGR00453
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process.
Probab=99.30 E-value=4e-11 Score=89.72 Aligned_cols=214 Identities=17% Similarity=0.229 Sum_probs=128.6
Q ss_pred EEEEECCCCCCCCC---CCEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCC-CCCCCCCCCCC-CCCCCH
Q ss_conf 99981776788898---85000006722668999999967-99869998683300010001-22222222223-456520
Q gi|254780765|r 11 LVIIPARLNSMRFP---KKILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQ-AGFESVMTHTS-HQSGSD 84 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp---~K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~~I~~~~~~-~g~~~i~t~~~-~~~GTd 84 (268)
T Consensus 1 ~avi~AAG~G~R~~~~~pKQy~~l~G~Pll~h~~~~~~~~~~~~~vvVV~~~~~~-~~~~~~~~~~~~~~~~~~v~GG~~ 79 (226)
T TIGR00453 1 SAVIPAAGRGTRMGSGVPKQYLELAGRPLLEHTLDAFLAHPAIDEVVVVVSPDDT-EFFQKALAARAKFKVVKIVAGGDT 79 (226)
T ss_pred CEEEEECCCCEECCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 9687316711133679870266518802217789998632320646898367415-888886325657861158469874
Q ss_pred H---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCC
Q ss_conf 4---8999974223345210000152210100000122333210134432111111220110037544314651454442
Q gi|254780765|r 85 R---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENG 161 (268)
Q Consensus 85 R---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~ 161 (268)
T Consensus 80 Rq~SV~~GL~a~~~~~~~~~VlvHDaARPf~~~~~~~~l~~~~~~~-~~a~~~A~Pv~DT--------lK~~-~~~G--~ 147 (226)
T TIGR00453 80 RQDSVRNGLKALPERADAEIVLVHDAARPFVPKELIDRLLEALEKG-AGAAILALPVADT--------LKRV-DADG--F 147 (226)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCE--------EEEE-CCCC--C
T ss_conf 6899999999876358988289847734588987999999998607-9834874205431--------5774-4888--6
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC--CCCCCCHHHCCHHHHHHHHC-CCEEEEEEECCCCCCCCCH
Q ss_conf 00111103577753111223520135520023333320--79982111208447989978-9626699845888876899
Q gi|254780765|r 162 CFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQ--LSPSVLEQRESLEQLRALEA-RMRIDVKIVQSNAMSVDTT 238 (268)
Q Consensus 162 ~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~--l~~t~lE~~E~lEqLR~len-g~~I~~~~~~~~~~~IDt~ 238 (268)
T Consensus 148 ~~~--T~-------dR~~Lw~~QTPQ~F~~~~L~~Ah~~~A~~~g~~~TDDA~~~E~--~~G~~v~LVeG~~~n~KiT~P 216 (226)
T TIGR00453 148 VVE--TV-------DREGLWAAQTPQAFRRELLLKAHARAAKAEGFEITDDASAVER--LFGGKVALVEGDADNFKITTP 216 (226)
T ss_pred EEC--CC-------CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH--HCCCCEEEEECCCCCEECCCH
T ss_conf 202--66-------6214525576887688899999999998469851358999999--638972887276101103672
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780765|r 239 NDLEKVRTLI 248 (268)
Q Consensus 239 ~Dl~~v~~il 248 (268)
T Consensus 217 ~DL~~Ae~~l 226 (226)
T TIGR00453 217 EDLALAEALL 226 (226)
T ss_pred HHHHHHHHCC
T ss_conf 7899987509