HHsearch alignment for GI: 254780765 and conserved domain: TIGR03469
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.83 E-value=0.034 Score=33.97 Aligned_cols=198 Identities=19% Similarity=0.192 Sum_probs=105.5
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-C-C-EEEEECCC--CCHHHHCCCCC--------CCCCC
Q ss_conf 65699981776788898850000067226689999999679-9-8-69998683--30001000122--------22222
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-I-G-RVIVAVDD--TKINEIVLQAG--------FESVM 74 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~-~-~viVaTdd--~~I~~~~~~~g--------~~~i~ 74 (268)
T Consensus 40 P~VSViIPARNEe~~--------------I~~~L~Sl~~Q~yp~~~EvivvDD~StD~T~~i~~~~~~~~~~~~rl~vi- 104 (384)
T TIGR03469 40 PAVVAVVPARNEADV--------------IGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV- 104 (384)
T ss_pred CCEEEEECCCCCHHH--------------HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-
T ss_conf 976999768987888--------------99999999837899975999995699863999999997446888638982-
Q ss_pred CCCCCC---CCC-HHHHHHHHHHC-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 222345---652-04899997422-3345210000152210100000122333210134432111111220110037544
Q gi|254780765|r 75 THTSHQ---SGS-DRIFEALNIID-SDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNI 149 (268)
Q Consensus 75 t~~~~~---~GT-dRi~ea~~~l~-~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~ 149 (268)
T Consensus 105 ~~~~lP~gW~GK~~A~~qg~~~A~~~~~~ge~llF~DADv~-~~p~~l~~~v~~~~~~~~~lvS~~p~~~~~~~~e~--- 180 (384)
T TIGR03469 105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGLDLVSLMVRLRCESFWEK--- 180 (384)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHCCCCEEECCCCEECCCHHHH---
T ss_conf 58989987651188999999998525787757999457500-08769999999999759984733354036978999---
Q ss_pred CEEEEECCCCCCCHHHHH-CCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEE
Q ss_conf 314651454442001111-03577753111223520135520023333320799821112084479899-7896266998
Q gi|254780765|r 150 VKIVVASPSENGCFRALY-FTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKI 227 (268)
Q Consensus 150 vKvi~~~~~~~~~~~aly-fsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~ 227 (268)
T Consensus 181 --l~~p--~~~~~~~~~~p~~~~~~~~~-~~~~a~G~~~l~rR~ay~~iGGh~av~~~v~DD~~Lar~ik~~G~~v~~~~ 255 (384)
T TIGR03469 181 --LLIP--AFVFFFQKLYPFRWVNDPRR-RTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred --HHHH--HHHHHHHHHCCHHHHCCCCC-CCHHCCCCEEEEEHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf --9999--99999999664887539653-300115865897899998748888883373328999999997599289862
Q ss_pred EC
Q ss_conf 45
Q gi|254780765|r 228 VQ 229 (268)
Q Consensus 228 ~~ 229 (268)
T Consensus 256 g~ 257 (384)
T TIGR03469 256 AA 257 (384)
T ss_pred CC
T ss_conf 65