HHsearch alignment for GI: 254780765 and conserved domain: cd02516
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.49 E-value=5.2e-13 Score=101.47 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=122.2
Q ss_pred EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCC---CCCCCCCCCCC
Q ss_conf 6999817767888988---50000067226689999999679-986999868330---00100012---22222222234
Q gi|254780765|r 10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQA---GFESVMTHTSH 79 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~---g~~~i~t~~~~ 79 (268)
T Consensus 1 v~aIIlAaG~G~R~~~~~PKQf~~i~gk~ii~~sl~~f~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~~~i~~v------ 74 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIV------ 74 (218)
T ss_pred CEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEE------
T ss_conf 98999268347148857985233589679999999999758998979999683789999998864479876998------
Q ss_pred CCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH-HCCCCCCCEEEEE
Q ss_conf 565204---899997422334521000015221010000012233321013443211111122011-0037544314651
Q gi|254780765|r 80 QSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST-DPDDPNIVKIVVA 155 (268)
Q Consensus 80 ~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~-~~~d~n~vKvi~~ 155 (268)
T Consensus 75 ~GG~tR~~SV~ngl~~l~~-~~~~~VlIHDaaRP~i~~~~i~~li~~~~~--~~~~i~~~p~~DTik~~~~~~~i~~t~- 150 (218)
T cd02516 75 EGGATRQDSVLNGLKALPD-ADPDIVLIHDAARPFVSPELIDRLIDALKE--YGAAIPAVPVTDTIKRVDDDGVVVETL- 150 (218)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEECCHHCEEEECCCCEEEEEC-
T ss_conf 9984099999989874012-699989992576778999999999999973--787189842510179963897798623-
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 4544420011110357775311122352013552002333332-079982111208447989978962669984588887
Q gi|254780765|r 156 SPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMS 234 (268)
Q Consensus 156 ~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~ 234 (268)
T Consensus 151 --------------------dR~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl--~~~~g~~v~~v~G~~~N~K 208 (218)
T cd02516 151 --------------------DREKLWAAQTPQAFRLDLLLKAHRQASEEGEEFTDDASL--VEAAGGKVALVEGSEDNIK 208 (218)
T ss_pred --------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCCCC
T ss_conf --------------------761379874875425999999999998649997858999--9986997699975875585
Q ss_pred CCCHHHHHHH
Q ss_conf 6899999999
Q gi|254780765|r 235 VDTTNDLEKV 244 (268)
Q Consensus 235 IDt~~Dl~~v 244 (268)
T Consensus 209 IT~~eDl~~A 218 (218)
T cd02516 209 ITTPEDLALA 218 (218)
T ss_pred CCCHHHHHHC
T ss_conf 9989998249