HHsearch alignment for GI: 254780765 and conserved domain: cd02516

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.49  E-value=5.2e-13  Score=101.47  Aligned_cols=203  Identities=18%  Similarity=0.241  Sum_probs=122.2

Q ss_pred             EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCC---CCCCCCCCCCC
Q ss_conf             6999817767888988---50000067226689999999679-986999868330---00100012---22222222234
Q gi|254780765|r   10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQA---GFESVMTHTSH   79 (268)
Q Consensus        10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~---g~~~i~t~~~~   79 (268)
T Consensus         1 v~aIIlAaG~G~R~~~~~PKQf~~i~gk~ii~~sl~~f~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~~~i~~v------   74 (218)
T cd02516           1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIV------   74 (218)
T ss_pred             CEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEE------
T ss_conf             98999268347148857985233589679999999999758998979999683789999998864479876998------


Q ss_pred             CCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH-HCCCCCCCEEEEE
Q ss_conf             565204---899997422334521000015221010000012233321013443211111122011-0037544314651
Q gi|254780765|r   80 QSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST-DPDDPNIVKIVVA  155 (268)
Q Consensus        80 ~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~-~~~d~n~vKvi~~  155 (268)
T Consensus        75 ~GG~tR~~SV~ngl~~l~~-~~~~~VlIHDaaRP~i~~~~i~~li~~~~~--~~~~i~~~p~~DTik~~~~~~~i~~t~-  150 (218)
T cd02516          75 EGGATRQDSVLNGLKALPD-ADPDIVLIHDAARPFVSPELIDRLIDALKE--YGAAIPAVPVTDTIKRVDDDGVVVETL-  150 (218)
T ss_pred             CCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEECCHHCEEEECCCCEEEEEC-
T ss_conf             9984099999989874012-699989992576778999999999999973--787189842510179963897798623-


Q ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             4544420011110357775311122352013552002333332-079982111208447989978962669984588887
Q gi|254780765|r  156 SPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMS  234 (268)
Q Consensus       156 ~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~  234 (268)
T Consensus       151 --------------------dR~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl--~~~~g~~v~~v~G~~~N~K  208 (218)
T cd02516         151 --------------------DREKLWAAQTPQAFRLDLLLKAHRQASEEGEEFTDDASL--VEAAGGKVALVEGSEDNIK  208 (218)
T ss_pred             --------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCCCC
T ss_conf             --------------------761379874875425999999999998649997858999--9986997699975875585


Q ss_pred             CCCHHHHHHH
Q ss_conf             6899999999
Q gi|254780765|r  235 VDTTNDLEKV  244 (268)
Q Consensus       235 IDt~~Dl~~v  244 (268)
T Consensus       209 IT~~eDl~~A  218 (218)
T cd02516         209 ITTPEDLALA  218 (218)
T ss_pred             CCCHHHHHHC
T ss_conf             9989998249