HHsearch alignment for GI: 254780765 and conserved domain: cd02517
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=100.00 E-value=0 Score=521.77 Aligned_cols=232 Identities=48% Similarity=0.721 Sum_probs=219.9
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5699981776788898850000067226689999999679-986999868330001000122222222223456520489
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIF 87 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ 87 (268)
T Consensus 1 k~i~iIPAR~~S~Rlp~K~L~~I~G~pmI~~v~~~a~~s~~~d~V~VATDd~eI~~~~~~~g~~~imT~~~h~~GTdRi~ 80 (239)
T cd02517 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA 80 (239)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98999758876878999730453995989999999996699884999648265553321479740104643356215999
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 99974223345210000152210100000122333210-13443211111122011003754431465145444200111
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~al 166 (268)
T Consensus 81 ea~~~l~~--~~D~iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~~~~~~~n~VKvv~~~~~-----~al 153 (239)
T cd02517 81 EVAEKLDA--DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDG-----YAL 153 (239)
T ss_pred HHHHHCCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEEECCCC-----CCH
T ss_conf 99997199--88989995187567899999999999852887559874023699889418996399978988-----511
Q ss_pred HCCCCCCCCCC-----CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 10357775311-----1223520135520023333320799821112084479899789626699845888876899999
Q gi|254780765|r 167 YFTRTKTPHGT-----GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL 241 (268)
Q Consensus 167 yfsR~~ip~~~-----~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl 241 (268)
T Consensus 154 yfSRs~IP~~~~~~~~~~~~khiGIy~f~~~~L~~f~~~~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~VDt~eDl 233 (239)
T cd02517 154 YFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDL 233 (239)
T ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
T ss_conf 03347886434565550410377655633999999873799825777608999999839806899969999898899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780765|r 242 EKVRTL 247 (268)
Q Consensus 242 ~~v~~i 247 (268)
T Consensus 234 ~~veki 239 (239)
T cd02517 234 ERVEAL 239 (239)
T ss_pred HHHHCC
T ss_conf 999709