HHsearch alignment for GI: 254780765 and conserved domain: cd02518
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=100.00 E-value=3.4e-35 Score=239.92 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=141.1
Q ss_pred EEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECC----CCCHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99981776788898850000067226689999999679-986999868----3300010001222222222234565204
Q gi|254780765|r 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVD----DTKINEIVLQAGFESVMTHTSHQSGSDR 85 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTd----d~~I~~~~~~~g~~~i~t~~~~~~GTdR 85 (268)
T Consensus 1 i~iI~aR~~S~RLp~K~L~~i~~~~~i~~~i~r~k~~~~~~~IivaTs~~~~Dd~l~~~~~~~~i~~fr--Gs~~dvl~R 78 (233)
T cd02518 1 VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFR--GSEEDVLGR 78 (233)
T ss_pred CEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEE--CCCCHHHHH
T ss_conf 989960778837898600230995799999999996689884999817865226999999748489995--783058899
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 89999742233452100001522101000001223332101344321111112201100375443146514544420011
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
T Consensus 79 ~~~a~~~~----~~d~ivri~gD~P~idp~~id~~i~~~~~~~~Dyvsn~~~~~~P~G~~----~ei~s--------~~~ 142 (233)
T cd02518 79 YYQAAEEY----NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD----VEVFT--------RDA 142 (233)
T ss_pred HHHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEE----EEEEH--------HHH
T ss_conf 99998715----788899976877758989999999998507999894478998888169----99881--------999
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 11035777531112235201355200233333207998211120844798997896266998458888768999999999
Q gi|254780765|r 166 LYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVR 245 (268)
Q Consensus 166 lyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~ 245 (268)
T Consensus 143 L~--~~~~~~~~~~~rEHvt~y~~~n~~~fki~~~~~~~----~~~-----------------~~~rltlD~~eD~~~~~ 199 (233)
T cd02518 143 LE--RAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPP----DRL-----------------SDLRLTVDTPEDFELIK 199 (233)
T ss_pred HH--HHHHHCCCCCCCCCCHHHHHHCCHHCEEEEECCCC----CCC-----------------CCCEEEECCHHHHHHHH
T ss_conf 99--99974478442100039988492022488744874----346-----------------55569836899999999
Q ss_pred HHHHC
Q ss_conf 99730
Q gi|254780765|r 246 TLIPH 250 (268)
Q Consensus 246 ~il~~ 250 (268)
T Consensus 200 ~I~~~ 204 (233)
T cd02518 200 EIYEA 204 (233)
T ss_pred HHHHH
T ss_conf 99998