HHsearch alignment for GI: 254780765 and conserved domain: cd04189

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.81  E-value=1.3e-18  Score=136.52  Aligned_cols=217  Identities=20%  Similarity=0.272  Sum_probs=141.2

Q ss_pred             EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCC---CCCCCCCCCCCCC
Q ss_conf             998177678889-------88500000672266899999996799869998683--30001000---1222222222234
Q gi|254780765|r   12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVL---QAGFESVMTHTSH   79 (268)
Q Consensus        12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~---~~g~~~i~t~~~~   79 (268)
T Consensus         3 aiILAaG~GtRl~p~t~~~P-K~Ll~i~gkpli~~~i~~l~~~gi~~Iiiv~~~~~~~i~~~~~~~~~~~~~i~~v~~~~   81 (236)
T cd04189           3 GLILAGGKGTRLRPLTYTRP-KQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEE   81 (236)
T ss_pred             EEEECCCCCCCCCCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCCCEEEEEECC
T ss_conf             99988868768870007998-02038998609999999999869958999854141220122346664787548986215


Q ss_pred             CCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf             5652-048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r   80 QSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS  158 (268)
Q Consensus        80 ~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~  158 (268)
T Consensus        82 ~~Gt~~al~~a~~~l~---~~~~iv-~~gD~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~g---~--~~~~-~~  149 (236)
T cd04189          82 PLGLAHAVLAARDFLG---DEPFVV-YLGDNL-IQ-EGISPLVRDFLEEDADASILLAEVEDPRRFG---V--AVVD-DG  149 (236)
T ss_pred             CCCHHHHHHHHHHHCC---CCCEEE-EECCCE-EC-CCHHHHHHHHHHCCCCCEEEEEEEECCCCCC---E--EEEC-CC
T ss_conf             5324578777665148---997589-727946-54-6899999999862786114789862466762---8--9973-62


Q ss_pred             CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCC---CHHHCCHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             4420011110357775311122352013552002333332079982---1112084479899789626699845888876
Q gi|254780765|r  159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSV---LEQRESLEQLRALEARMRIDVKIVQSNAMSV  235 (268)
Q Consensus       159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~---lE~~E~lEqLR~leng~~I~~~~~~~~~~~I  235 (268)
T Consensus       150 -----~v~~i~eK--~~~~~~~~~~~Giy~f~~~i~~~~~~~~~~~~~e~~i~d~i--~~li~~g~~v~~~~~~g~W~Di  220 (236)
T cd04189         150 -----RIVRLVEK--PKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAI--QWLIDRGRRVGYSIVTGWWKDT  220 (236)
T ss_pred             -----EEEECCCC--CCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCEEHHHHH--HHHHHCCCCEEEEEECCEEEEC
T ss_conf             -----35431325--88987675999999999899999984799878813389999--9999879988999719979979


Q ss_pred             CCHHHHHHHHHHHHC
Q ss_conf             899999999999730
Q gi|254780765|r  236 DTTNDLEKVRTLIPH  250 (268)
Q Consensus       236 Dt~~Dl~~v~~il~~  250 (268)
T Consensus       221 gtpedl~~A~~~l~~  235 (236)
T cd04189         221 GTPEDLLEANRLLLD  235 (236)
T ss_pred             CCHHHHHHHHHHHHC
T ss_conf             899999999899871