HHsearch alignment for GI: 254780765 and conserved domain: cd06434
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=96.70 E-value=0.0095 Score=37.43 Aligned_cols=183 Identities=22% Similarity=0.250 Sum_probs=90.2
Q ss_pred EEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC---C--C-HHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6999817767888988500000672266899999996799869998683---3--0-00100012222222222345652
Q gi|254780765|r 10 VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD---T--K-INEIVLQAGFESVMTHTSHQSGS 83 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd---~--~-I~~~~~~~g~~~i~t~~~~~~GT 83 (268)
T Consensus 2 VsviIPayNE~~-------------~il~~~l~s~~~~~~~eiivV~D~s~d~~~~~~~~~~~~~~~-~v~~-~~~-~GK 65 (235)
T cd06434 2 VTVIIPVYDEDP-------------DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGI-FVIT-VPH-PGK 65 (235)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCE-EEEE-CCC-CCH
T ss_conf 799995226976-------------899999999980899989999889997289999986348978-9998-898-998
Q ss_pred -HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCC
Q ss_conf -0489999742233452100001522101000001223332101344321111112201100375443146514544420
Q gi|254780765|r 84 -DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGC 162 (268)
Q Consensus 84 -dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~ 162 (268)
T Consensus 66 ~~Aln~~l~~----a~~d~v~~~DaD~-~~~~~~l~~l~~~f~d~~vg~V~~~~~~~~~~----~~~~~~---------- 126 (235)
T cd06434 66 RRALAEGIRH----VTTDIVVLLDSDT-VWPPNALPEMLKPFEDPKVGGVGTNQRILRPR----DSKWSF---------- 126 (235)
T ss_pred HHHHHHHHHH----CCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC----CCHHHH----------
T ss_conf 9999999997----5778899985885-35888999999964899879997038864699----989999----------
Q ss_pred HHHHHCCCC-CCCCCCCCCCCC----EE-EEEEEHHHHHHHHCCCCC--------CCHHHCCHHH-HHHHHCCCEEEEEE
Q ss_conf 011110357-775311122352----01-355200233333207998--------2111208447-98997896266998
Q gi|254780765|r 163 FRALYFTRT-KTPHGTGPFYQH----LG-IYAYRREALKRFTQLSPS--------VLEQRESLEQ-LRALEARMRIDVKI 227 (268)
Q Consensus 163 ~~alyfsR~-~ip~~~~~~~~h----vG-Iy~f~~~~L~~~~~l~~t--------~lE~~E~lEq-LR~leng~~I~~~~ 227 (268)
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~Rr~~l~~~~~~~~~~~~~~~g~~~~~~ED~~lt~r~~~~G~r~~y~~ 206 (235)
T cd06434 127 LAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999999999999855986896370799999999853301012300027777764269999999998699899924