Query gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 268
No_of_seqs 134 out of 4071
Neff 6.9
Searched_HMMs 39220
Date Sun May 29 19:46:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780765.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05450 3-deoxy-manno-octulos 100.0 0 0 537.7 18.7 237 8-250 1-248 (248)
2 cd02517 CMP-KDO-Synthetase CMP 100.0 0 0 521.8 18.2 232 9-247 1-239 (239)
3 COG1212 KdsB CMP-2-keto-3-deox 100.0 0 0 518.2 15.8 239 7-251 1-245 (247)
4 PRK13368 3-deoxy-manno-octulos 100.0 0 0 510.3 18.0 232 8-248 1-238 (238)
5 TIGR00466 kdsB 3-deoxy-D-manno 100.0 0 0 435.2 13.2 228 9-242 2-246 (246)
6 pfam02348 CTP_transf_3 Cytidyl 100.0 0 0 370.6 12.3 189 11-206 1-197 (197)
7 cd02513 CMP-NeuAc_Synthase CMP 100.0 9.5E-36 2.4E-40 243.4 13.8 211 9-248 1-223 (223)
8 cd02518 GT2_SpsF SpsF is a gly 100.0 3.4E-35 8.7E-40 239.9 12.4 199 11-250 1-204 (233)
9 TIGR03584 PseF pseudaminic aci 100.0 9.9E-33 2.5E-37 224.6 13.5 208 11-249 1-221 (222)
10 COG1083 NeuA CMP-N-acetylneura 100.0 7.1E-30 1.8E-34 206.7 11.6 213 7-251 1-225 (228)
11 COG1861 SpsF Spore coat polysa 100.0 6.2E-30 1.6E-34 207.1 6.9 196 7-250 1-206 (241)
12 TIGR01173 glmU UDP-N-acetylglu 99.9 2E-25 5.1E-30 179.0 14.3 223 11-252 2-249 (461)
13 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.7E-22 4.2E-27 160.8 13.8 213 12-241 1-229 (229)
14 COG1207 GlmU N-acetylglucosami 99.9 2.2E-21 5.6E-26 153.7 15.1 226 9-252 2-246 (460)
15 PRK09451 glmU bifunctional N-a 99.9 1E-20 2.6E-25 149.6 15.4 220 8-251 4-242 (456)
16 cd04189 G1P_TT_long G1P_TT_lon 99.8 1.3E-18 3.2E-23 136.5 14.6 217 12-250 3-235 (236)
17 TIGR01208 rmlA_long glucose-1- 99.8 1.5E-18 3.9E-23 136.0 12.4 212 12-253 2-243 (361)
18 cd06425 M1P_guanylylT_B_like_N 99.7 1.8E-16 4.7E-21 123.0 14.6 216 12-248 3-232 (233)
19 cd06426 NTP_transferase_like_2 99.7 3.1E-16 7.9E-21 121.6 14.1 208 12-245 1-220 (220)
20 cd06915 NTP_transferase_WcbM_l 99.7 3.2E-16 8.1E-21 121.5 13.4 209 12-245 1-223 (223)
21 cd02538 G1P_TT_short G1P_TT_sh 99.7 4.7E-16 1.2E-20 120.5 13.5 221 12-250 3-239 (240)
22 cd02541 UGPase_prokaryotic Pro 99.7 2.7E-15 7E-20 115.7 15.3 228 12-249 3-265 (267)
23 PRK00155 ispD 2-C-methyl-D-ery 99.7 1.8E-15 4.5E-20 116.9 13.0 214 6-251 1-226 (228)
24 cd02523 PC_cytidylyltransferas 99.7 2.1E-15 5.5E-20 116.4 12.1 212 12-245 1-229 (229)
25 pfam01128 IspD Uncharacterized 99.6 5.4E-15 1.4E-19 113.9 12.6 210 10-250 1-221 (221)
26 PRK05293 glgC glucose-1-phosph 99.6 5.9E-14 1.5E-18 107.4 16.4 231 7-253 1-263 (381)
27 cd04183 GT2_BcE_like GT2_BcbE_ 99.6 1.5E-14 3.7E-19 111.2 13.1 209 12-242 1-231 (231)
28 COG1208 GCD1 Nucleoside-diphos 99.6 3.9E-14 1E-18 108.5 14.7 220 11-250 3-236 (358)
29 TIGR03310 matur_ygfJ molybdenu 99.6 3.5E-14 9E-19 108.8 13.9 117 12-132 2-123 (188)
30 cd02524 G1P_cytidylyltransfera 99.6 9.8E-14 2.5E-18 106.0 15.1 215 12-252 1-249 (253)
31 cd06422 NTP_transferase_like_1 99.6 4.2E-14 1.1E-18 108.3 12.6 207 12-244 2-221 (221)
32 COG2068 Uncharacterized MobA-r 99.6 4.3E-14 1.1E-18 108.2 11.9 189 6-249 2-198 (199)
33 COG1209 RfbA dTDP-glucose pyro 99.6 1.4E-13 3.6E-18 105.0 14.3 218 12-250 3-237 (286)
34 PRK13389 UTP--glucose-1-phosph 99.6 3.5E-13 8.8E-18 102.6 14.9 248 5-263 3-296 (302)
35 PRK00317 mobA molybdopterin-gu 99.5 2.4E-13 6.1E-18 103.6 13.5 119 7-132 1-122 (193)
36 PRK10122 UTP--glucose-1-phosph 99.5 1E-12 2.6E-17 99.7 16.5 246 7-262 1-292 (297)
37 TIGR03202 pucB xanthine dehydr 99.5 3.8E-13 9.8E-18 102.3 13.7 119 10-130 1-127 (190)
38 PRK02726 molybdopterin-guanine 99.5 3E-13 7.7E-18 103.0 13.0 117 3-126 1-120 (200)
39 cd06428 M1P_guanylylT_A_like_N 99.5 6.2E-13 1.6E-17 101.0 14.2 222 12-247 1-256 (257)
40 PRK13385 2-C-methyl-D-erythrit 99.5 5E-13 1.3E-17 101.6 13.2 214 8-251 1-234 (238)
41 pfam00483 NTP_transferase Nucl 99.5 1.1E-12 2.8E-17 99.5 14.9 221 12-248 2-244 (247)
42 cd02516 CDP-ME_synthetase CDP- 99.5 5.2E-13 1.3E-17 101.5 11.6 203 10-244 1-218 (218)
43 PRK09382 ispDF bifunctional 2- 99.5 2.4E-12 6E-17 97.4 13.0 205 5-250 2-218 (382)
44 cd04181 NTP_transferase NTP_tr 99.5 1.7E-12 4.3E-17 98.3 12.0 201 12-235 1-216 (217)
45 COG2266 GTP:adenosylcobinamide 99.4 1.8E-12 4.6E-17 98.1 11.3 106 11-125 2-112 (177)
46 PRK00560 molybdopterin-guanine 99.4 1.2E-11 3.1E-16 92.9 13.6 186 4-251 3-194 (196)
47 KOG1322 consensus 99.4 9.9E-12 2.5E-16 93.5 13.1 220 8-247 8-242 (371)
48 PRK02862 glgC glucose-1-phosph 99.4 3E-11 7.6E-16 90.5 15.1 229 7-249 1-273 (429)
49 cd04182 GT_2_like_f GT_2_like_ 99.4 1.8E-12 4.5E-17 98.1 8.4 120 10-132 1-124 (186)
50 PRK00844 glgC glucose-1-phosph 99.4 5.2E-11 1.3E-15 89.0 15.8 233 6-254 2-282 (409)
51 PRK01884 consensus 99.4 1.8E-11 4.7E-16 91.8 13.1 243 2-256 10-298 (435)
52 COG1211 IspD 4-diphosphocytidy 99.4 1.6E-11 4.1E-16 92.2 11.4 214 6-250 1-228 (230)
53 TIGR00453 ispD 2-C-methyl-D-er 99.3 4E-11 1E-15 89.7 11.1 214 11-248 1-226 (226)
54 PRK04928 consensus 99.3 3.9E-10 9.9E-15 83.5 14.9 234 7-256 1-280 (405)
55 cd02503 MobA MobA catalyzes th 99.3 7.4E-11 1.9E-15 88.0 11.1 109 10-126 1-111 (181)
56 PRK03282 consensus 99.3 3.8E-10 9.8E-15 83.6 14.6 239 5-256 2-286 (406)
57 PRK03701 consensus 99.3 3.5E-10 9E-15 83.8 14.4 236 6-254 16-297 (431)
58 cd04198 eIF-2B_gamma_N The N-t 99.2 6.4E-11 1.6E-15 88.4 9.6 119 12-137 3-137 (214)
59 cd02508 ADP_Glucose_PP ADP-glu 99.2 7E-10 1.8E-14 81.9 11.3 173 12-234 1-199 (200)
60 COG0746 MobA Molybdopterin-gua 99.1 7E-10 1.8E-14 81.9 9.4 116 6-130 1-118 (192)
61 PRK00725 glgC glucose-1-phosph 99.1 7.6E-09 1.9E-13 75.5 14.2 238 2-252 12-295 (431)
62 COG1213 Predicted sugar nucleo 99.1 1.1E-09 2.7E-14 80.8 8.5 211 11-250 5-230 (239)
63 cd02507 eIF-2B_gamma_N_like Th 99.0 3.7E-09 9.3E-14 77.5 10.3 117 12-136 3-139 (216)
64 cd04197 eIF-2B_epsilon_N The N 99.0 3.3E-09 8.4E-14 77.7 9.4 106 12-126 3-129 (217)
65 COG1210 GalU UDP-glucose pyrop 98.8 3.8E-07 9.7E-12 64.9 14.4 247 7-261 2-284 (291)
66 TIGR01099 galU UTP-glucose-1-p 98.8 4.2E-08 1.1E-12 70.9 8.9 224 12-243 4-269 (270)
67 TIGR03552 F420_cofC 2-phospho- 98.7 7.7E-08 2E-12 69.2 8.2 175 12-245 2-187 (195)
68 COG0448 GlgC ADP-glucose pyrop 98.7 2.2E-07 5.5E-12 66.4 10.2 239 5-257 1-270 (393)
69 TIGR02091 glgC glucose-1-phosp 98.6 3.9E-07 1E-11 64.8 9.0 242 10-257 1-305 (421)
70 pfam01983 CofC Guanylyl transf 98.4 1.2E-06 3.2E-11 61.7 7.7 187 11-262 2-199 (217)
71 KOG1462 consensus 98.4 4.4E-07 1.1E-11 64.5 5.3 127 2-135 2-146 (433)
72 KOG1460 consensus 98.3 9.7E-07 2.5E-11 62.3 5.8 196 9-220 2-217 (407)
73 TIGR02665 molyb_mobA molybdopt 98.3 1.2E-06 3E-11 61.8 5.4 119 10-133 1-129 (202)
74 PRK00576 molybdopterin-guanine 98.3 2.5E-05 6.4E-10 53.5 11.2 102 18-131 1-107 (178)
75 TIGR00454 TIGR00454 conserved 98.2 3.6E-06 9.2E-11 58.8 6.7 110 11-125 2-124 (204)
76 cd02509 GDP-M1P_Guanylyltransf 98.2 1.3E-05 3.3E-10 55.3 8.2 185 10-202 1-211 (274)
77 COG4750 LicC CTP:phosphocholin 97.8 2.1E-05 5.2E-10 54.1 4.0 94 12-113 3-107 (231)
78 COG1920 Predicted nucleotidylt 97.6 0.00049 1.2E-08 45.5 8.2 159 34-257 31-192 (210)
79 COG0836 {ManC} Mannose-1-phosp 97.6 0.00087 2.2E-08 43.9 9.4 189 10-207 2-220 (333)
80 TIGR02623 G1P_cyt_trans glucos 97.4 0.01 2.6E-07 37.2 13.3 213 12-252 3-250 (256)
81 cd00761 Glyco_tranf_GTA_type G 97.4 0.0023 6E-08 41.2 9.2 101 12-131 1-110 (156)
82 cd06439 CESA_like_1 CESA_like_ 97.1 0.0051 1.3E-07 39.1 8.3 194 7-243 28-239 (251)
83 KOG1461 consensus 96.9 0.011 2.8E-07 37.0 8.9 127 7-138 22-167 (673)
84 cd06434 GT2_HAS Hyaluronan syn 96.7 0.0095 2.4E-07 37.4 7.4 183 10-227 2-206 (235)
85 cd06437 CESA_CaSu_A2 Cellulose 96.7 0.017 4.2E-07 35.9 8.5 202 9-242 2-222 (232)
86 cd02520 Glucosylceramide_synth 96.6 0.063 1.6E-06 32.3 11.5 172 9-242 2-186 (196)
87 TIGR01207 rmlA glucose-1-phosp 96.6 0.029 7.4E-07 34.4 9.3 222 12-249 2-237 (286)
88 cd02525 Succinoglycan_BP_ExoA 96.5 0.045 1.2E-06 33.2 10.0 204 10-243 2-218 (249)
89 cd04195 GT2_AmsE_like GT2_AmsE 96.3 0.047 1.2E-06 33.1 8.7 167 36-227 14-194 (201)
90 cd06421 CESA_CelA_like CESA_Ce 96.2 0.023 5.9E-07 35.0 6.9 186 9-227 2-204 (234)
91 cd06427 CESA_like_2 CESA_like_ 96.0 0.11 2.7E-06 30.9 9.4 204 9-245 2-223 (241)
92 TIGR03469 HonB hopene-associat 95.8 0.034 8.7E-07 34.0 6.4 198 8-229 40-257 (384)
93 cd06435 CESA_NdvC_like NdvC_li 95.5 0.18 4.6E-06 29.5 8.9 193 36-244 13-220 (236)
94 cd04188 DPG_synthase DPG_synth 95.4 0.065 1.7E-06 32.2 6.4 163 51-230 32-204 (211)
95 cd06442 DPM1_like DPM1_like re 95.2 0.086 2.2E-06 31.5 6.5 188 12-232 1-201 (224)
96 cd06433 GT_2_WfgS_like WfgS an 94.7 0.38 9.6E-06 27.5 10.0 170 32-227 8-187 (202)
97 cd04184 GT2_RfbC_Mx_like Myxoc 94.3 0.46 1.2E-05 26.9 9.2 166 35-227 15-194 (202)
98 cd02511 Beta4Glucosyltransfera 94.1 0.15 3.9E-06 29.9 5.6 82 41-130 15-102 (229)
99 PRK11204 N-glycosyltransferase 93.7 0.47 1.2E-05 26.8 7.6 186 32-244 64-268 (421)
100 COG1215 Glycosyltransferases, 93.1 0.75 1.9E-05 25.6 9.1 209 8-243 54-275 (439)
101 cd06438 EpsO_like EpsO protein 93.0 0.55 1.4E-05 26.4 7.0 97 34-132 9-113 (183)
102 cd04186 GT_2_like_c Subfamily 92.8 0.82 2.1E-05 25.4 8.8 143 33-227 8-158 (166)
103 PRK10714 undecaprenyl phosphat 91.7 0.83 2.1E-05 25.3 6.6 187 4-230 2-200 (324)
104 cd04196 GT_2_like_d Subfamily 91.7 1.1 2.9E-05 24.5 10.2 178 32-226 8-195 (214)
105 TIGR03111 glyc2_xrt_Gpos1 puta 91.4 1 2.6E-05 24.7 6.8 195 32-244 59-275 (439)
106 cd04192 GT_2_like_e Subfamily 91.4 1.2 2.9E-05 24.4 7.0 187 34-241 9-219 (229)
107 TIGR01105 galF regulatory prot 89.3 0.4 1E-05 27.3 3.2 50 8-58 2-58 (297)
108 cd06423 CESA_like CESA_like is 86.8 2.5 6.3E-05 22.3 6.0 97 33-133 8-113 (180)
109 cd06913 beta3GnTL1_like Beta 1 86.5 2.7 6.9E-05 22.1 9.2 181 32-227 7-202 (219)
110 PRK13915 putative glucosyl-3-p 85.2 3.2 8E-05 21.7 6.6 108 7-132 30-149 (307)
111 cd04193 UDPGlcNAc_PPase UDPGlc 84.7 2 5E-05 23.0 4.7 180 8-200 14-257 (323)
112 cd04180 UGPase_euk_like Eukary 82.6 2.7 6.9E-05 22.1 4.6 128 11-142 2-177 (266)
113 PTZ00339 UDP-N-acetylglucosami 82.1 3.1 8E-05 21.7 4.8 182 7-198 107-357 (499)
114 TIGR03472 HpnI hopanoid biosyn 81.2 4.5 0.00012 20.7 7.3 184 28-226 46-245 (373)
115 cd04185 GT_2_like_b Subfamily 79.8 5.1 0.00013 20.4 6.6 149 31-224 6-164 (202)
116 pfam00535 Glycos_transf_2 Glyc 79.8 5.1 0.00013 20.4 5.9 98 32-136 8-115 (168)
117 cd00897 UGPase_euk Eukaryotic 78.1 5.7 0.00015 20.1 5.2 128 8-142 2-178 (300)
118 cd06424 UGGPase UGGPase cataly 77.7 4.4 0.00011 20.8 4.4 125 11-139 2-182 (315)
119 cd04179 DPM_DPG-synthase_like 74.5 5.1 0.00013 20.4 4.0 97 86-198 71-167 (185)
120 PRK13118 consensus 72.5 7.9 0.0002 19.2 5.0 97 31-143 58-162 (269)
121 PRK12338 hypothetical protein; 72.1 7.1 0.00018 19.5 4.3 201 35-253 94-312 (320)
122 TIGR03030 CelA cellulose synth 70.0 9 0.00023 18.8 6.3 201 22-244 129-369 (713)
123 TIGR01211 ELP3 histone acetylt 67.8 4.4 0.00011 20.8 2.4 53 208-261 286-339 (573)
124 cd04724 Tryptophan_synthase_al 67.8 10 0.00026 18.6 6.3 100 30-144 40-145 (242)
125 TIGR00970 leuA_yeast 2-isoprop 67.4 10 0.00026 18.5 5.3 90 34-126 108-235 (615)
126 PRK10073 predicted glycosyl tr 67.2 10 0.00026 18.5 6.0 106 8-134 6-120 (329)
127 TIGR02875 spore_0_A sporulatio 66.4 4.9 0.00013 20.5 2.5 60 51-121 4-71 (270)
128 pfam09837 DUF2064 Uncharacteri 66.0 11 0.00028 18.3 4.2 81 42-128 3-90 (121)
129 cd02522 GT_2_like_a GT_2_like_ 63.7 12 0.00031 18.1 6.1 159 33-223 10-176 (221)
130 PRK10116 universal stress prot 63.6 7.6 0.00019 19.3 3.0 19 26-44 5-23 (142)
131 cd06436 GlcNAc-1-P_transferase 63.3 12 0.00031 18.0 6.5 106 34-140 9-130 (191)
132 pfam03213 Pox_P35 Poxvirus P35 62.6 4.7 0.00012 20.6 1.8 109 96-223 116-226 (325)
133 cd02526 GT2_RfbF_like RfbF is 61.9 13 0.00033 17.9 8.0 178 33-228 9-198 (237)
134 PRK10018 predicted glycosyl tr 60.6 14 0.00035 17.7 12.8 206 32-267 15-241 (279)
135 PRK13132 consensus 60.2 14 0.00035 17.7 4.7 93 31-138 52-148 (246)
136 pfam00107 ADH_zinc_N Zinc-bind 56.5 16 0.00041 17.3 4.4 77 40-126 6-82 (131)
137 PRK05396 tdh L-threonine 3-deh 54.2 17 0.00044 17.1 5.9 93 24-126 163-255 (341)
138 cd04187 DPM1_like_bac Bacteria 53.8 18 0.00045 17.0 5.1 159 12-202 1-167 (181)
139 TIGR02094 more_P_ylases alpha- 53.7 14 0.00035 17.7 2.9 56 29-85 450-510 (618)
140 TIGR01459 HAD-SF-IIA-hyp4 HAD- 53.7 14 0.00037 17.6 3.0 23 50-72 41-67 (243)
141 TIGR01825 gly_Cac_T_rel pyrido 50.3 14 0.00035 17.7 2.5 56 26-82 143-210 (392)
142 TIGR03366 HpnZ_proposed putati 49.0 21 0.00054 16.5 6.8 92 24-127 120-211 (280)
143 pfam05991 DUF901 Protein of un 48.6 18 0.00046 17.0 2.9 19 52-70 97-115 (166)
144 COG5014 Predicted Fe-S oxidore 48.5 14 0.00036 17.6 2.3 110 86-224 79-189 (228)
145 PRK13805 bifunctional acetalde 47.5 22 0.00057 16.4 4.4 88 22-117 461-558 (862)
146 KOG2978 consensus 45.0 24 0.00062 16.2 4.8 98 33-135 17-124 (238)
147 TIGR01858 tag_bisphos_ald clas 44.6 12 0.0003 18.2 1.4 28 27-55 19-46 (282)
148 pfam07788 DUF1626 Protein of u 43.5 18 0.00046 17.0 2.2 40 32-71 26-70 (70)
149 TIGR01530 nadN NAD nucleotidas 43.1 26 0.00066 16.0 3.5 56 24-79 158-216 (550)
150 COG1274 PckA Phosphoenolpyruva 43.1 26 0.00066 16.0 3.9 35 26-60 10-44 (608)
151 PRK13122 consensus 42.8 26 0.00067 15.9 6.2 101 30-144 39-144 (242)
152 cd04190 Chitin_synth_C C-termi 42.7 26 0.00067 15.9 5.3 146 88-243 63-229 (244)
153 TIGR01668 YqeG_hyp_ppase HAD s 42.3 27 0.00068 15.9 4.9 100 35-145 55-169 (196)
154 cd04191 Glucan_BSP_ModH Glucan 41.4 28 0.0007 15.8 7.8 159 51-228 36-225 (254)
155 PRK10310 galactitol-specific P 40.4 28 0.00072 15.8 2.8 45 50-104 3-56 (94)
156 PRK11498 bcsA cellulose syntha 38.9 30 0.00077 15.6 6.0 192 28-242 278-491 (858)
157 TIGR03451 mycoS_dep_FDH mycoth 38.2 31 0.00079 15.5 6.8 93 24-126 176-268 (358)
158 pfam10087 DUF2325 Uncharacteri 37.2 31 0.00079 15.5 2.6 28 49-76 47-80 (96)
159 cd06420 GT2_Chondriotin_Pol_N 37.1 32 0.00082 15.4 9.1 157 32-227 7-173 (182)
160 TIGR01928 menC_lowGC/arch o-su 36.9 27 0.00069 15.9 2.3 16 235-250 303-318 (326)
161 TIGR01169 rplA_bact ribosomal 36.4 33 0.00084 15.3 3.8 22 51-73 72-93 (227)
162 COG1246 ArgA N-acetylglutamate 35.7 33 0.00083 15.4 2.5 22 35-56 85-106 (153)
163 TIGR00608 radc DNA repair prot 34.8 27 0.00069 15.9 2.0 44 186-249 147-194 (223)
164 TIGR00016 ackA acetate kinase; 34.7 8.8 0.00023 18.9 -0.5 108 105-237 105-240 (416)
165 PRK07062 short chain dehydroge 34.7 35 0.0009 15.1 3.3 43 22-65 5-49 (265)
166 PRK04210 phosphoenolpyruvate c 34.6 35 0.0009 15.1 3.6 32 28-59 14-45 (610)
167 COG0386 BtuE Glutathione perox 34.3 36 0.00091 15.1 2.6 27 58-84 76-103 (162)
168 TIGR00583 mre11 DNA repair pro 33.9 36 0.00092 15.1 2.6 37 59-95 32-72 (424)
169 PRK13138 consensus 33.2 37 0.00095 15.0 2.5 100 31-143 54-160 (264)
170 TIGR01116 ATPase-IIA1_Ca calci 32.5 38 0.00097 14.9 3.0 36 34-70 468-505 (800)
171 pfam03465 eRF1_3 eRF1 domain 3 30.8 41 0.001 14.7 2.4 42 42-83 30-84 (100)
172 PRK12384 sorbitol-6-phosphate 30.8 41 0.001 14.7 2.8 14 236-249 225-238 (259)
173 TIGR00010 TIGR00010 hydrolase, 30.5 41 0.0011 14.7 3.1 45 37-81 20-70 (269)
174 KOG2367 consensus 29.3 43 0.0011 14.6 6.2 91 32-127 130-245 (560)
175 PRK09860 putative alcohol dehy 29.0 44 0.0011 14.6 5.7 86 31-117 13-107 (383)
176 PRK06500 short chain dehydroge 28.3 45 0.0011 14.5 5.8 90 21-112 2-94 (249)
177 COG0381 WecB UDP-N-acetylgluco 28.2 45 0.0012 14.5 4.6 83 26-109 5-102 (383)
178 TIGR01510 coaD_prev_kdtB pante 27.9 46 0.0012 14.4 3.9 68 50-122 64-139 (163)
179 pfam00799 Gemini_AL1 Geminivir 27.6 35 0.0009 15.1 1.6 10 71-80 7-16 (114)
180 TIGR01890 N-Ac-Glu-synth amino 27.2 35 0.00088 15.2 1.5 26 31-56 176-201 (439)
181 cd01971 Nitrogenase_VnfN_like 27.1 47 0.0012 14.4 2.3 105 30-134 67-192 (427)
182 PRK00811 spermidine synthase; 27.1 47 0.0012 14.3 4.3 112 24-138 79-197 (283)
183 PRK05647 purN phosphoribosylgl 26.4 49 0.0012 14.3 5.1 83 36-122 14-103 (200)
184 TIGR00615 recR recombination p 26.1 44 0.0011 14.6 1.9 33 88-122 95-132 (205)
185 COG2003 RadC DNA repair protei 26.0 44 0.0011 14.6 1.8 14 108-121 100-113 (224)
186 PRK13113 consensus 25.4 51 0.0013 14.2 4.0 98 31-143 58-162 (263)
187 COG1852 Uncharacterized conser 25.3 51 0.0013 14.1 4.5 20 232-251 188-207 (209)
188 KOG1208 consensus 25.2 51 0.0013 14.1 3.3 35 24-58 34-68 (314)
189 TIGR00438 rrmJ ribosomal RNA l 25.0 33 0.00083 15.4 1.0 32 99-132 73-106 (192)
190 cd03767 SR_Res_par Serine reco 24.8 52 0.0013 14.1 2.9 82 54-138 7-100 (146)
191 COG1454 EutG Alcohol dehydroge 24.8 52 0.0013 14.1 5.4 80 31-111 11-99 (377)
192 KOG1198 consensus 24.6 52 0.0013 14.1 5.9 83 20-109 152-236 (347)
193 pfam04951 Peptidase_M55 D-amin 24.3 53 0.0014 14.0 3.5 21 37-57 39-59 (265)
194 KOG1602 consensus 24.0 54 0.0014 14.0 2.1 84 60-143 71-172 (271)
195 COG0604 Qor NADPH:quinone redu 23.7 54 0.0014 14.0 6.0 92 24-127 142-234 (326)
196 PRK13125 trpA tryptophan synth 23.7 55 0.0014 14.0 3.4 100 30-142 44-146 (247)
197 PRK07757 acetyltransferase; Pr 23.7 55 0.0014 14.0 2.8 13 49-61 40-52 (152)
198 PRK09982 universal stress prot 23.7 55 0.0014 14.0 2.4 24 34-57 17-42 (142)
199 PTZ00256 glutathione peroxidas 23.3 48 0.0012 14.3 1.7 12 237-248 169-181 (183)
200 TIGR02691 arsC_pI258_fam arsen 22.9 36 0.00092 15.1 0.9 19 97-115 68-90 (129)
201 TIGR02824 quinone_pig3 putativ 22.6 57 0.0015 13.8 5.0 90 25-126 145-237 (334)
202 PRK05580 primosome assembly pr 22.5 58 0.0015 13.8 3.5 51 81-135 460-510 (699)
203 TIGR01290 nifB nitrogenase cof 22.1 59 0.0015 13.8 3.6 113 85-249 96-213 (461)
204 COG2082 CobH Precorrin isomera 22.0 59 0.0015 13.8 2.8 39 32-70 74-112 (210)
205 COG1243 ELP3 Histone acetyltra 21.8 59 0.0015 13.7 3.4 72 184-260 214-286 (515)
206 PRK13124 consensus 21.8 60 0.0015 13.7 3.6 93 31-137 50-147 (257)
207 PRK07985 oxidoreductase; Provi 21.7 60 0.0015 13.7 6.6 105 17-122 41-158 (294)
208 PRK13137 consensus 21.3 61 0.0016 13.7 4.3 98 31-143 65-168 (266)
209 cd01966 Nitrogenase_NifN_1 Nit 21.2 61 0.0016 13.6 2.4 38 18-56 51-89 (417)
210 PRK10966 exonuclease subunit S 21.1 61 0.0016 13.6 3.2 50 37-88 28-92 (402)
211 PRK13111 trpA tryptophan synth 20.9 62 0.0016 13.6 4.2 100 30-144 49-154 (256)
212 TIGR01127 ilvA_1Cterm threonin 20.5 63 0.0016 13.6 3.9 32 43-74 66-99 (381)
213 PRK09590 celB cellobiose phosp 20.3 64 0.0016 13.5 5.8 100 7-125 1-101 (104)
No 1
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=100.00 E-value=0 Score=537.74 Aligned_cols=237 Identities=49% Similarity=0.717 Sum_probs=222.5
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 65699981776788898850000067226689999999679-98699986833000100012222222222345652048
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
||++++|||||+|+|||||||++|+|+|||+||+++|++++ +++|||||||++|+++|+++|++++||+++|.+||||+
T Consensus 1 Mk~~~iIPAR~~SsR~PgKpL~~I~GkpmI~~v~~~a~~~~~~~~V~VATdd~~I~~~~~~~g~~~imTs~~h~~GTdRi 80 (248)
T PRK05450 1 MKFVVIIPARYASTRLPGKPLADIGGKPMIVRVYERASKASGADRVVVATDDERIADAVEAFGGEVVMTSADHPSGTDRI 80 (248)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 97799980797787899862024189698999999999668988299970885244353156862340464547703899
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 999974223345210000152210100000122333210-1344321111112201100375443146514544420011
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
+||++.++. .++|+|||||||+||++|++|+.+++.+. +++++++|+++++.+++++.|+|+|||++++++ +|
T Consensus 81 ~Ea~~~l~~-~~~d~IInvQGDEPli~p~~I~~li~~~~~~~~~~i~tl~~~~~~~~~~~d~n~VKvv~~~~~-----~a 154 (248)
T PRK05450 81 AEAAAKLGL-SDDDIVVNVQGDEPLIPPELIDQVAEPLAAHPEADMATLAVPIDDEEELFNPNVVKVVLDKNG-----YA 154 (248)
T ss_pred HHHHHHCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEEECCCC-----CE
T ss_conf 999985087-778689993598677899999999999985886639999986288899608883489989999-----84
Q ss_pred HHCCCCCCCCCC--------CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 110357775311--------12235201355200233333207998211120844798997896266998458-888768
Q gi|254780765|r 166 LYFTRTKTPHGT--------GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 166 lyfsR~~ip~~~--------~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID 236 (268)
+||||++|||.. .++|+|+|||+|++++|.+|.+|++|++|+.|+||||||||||++|+++.+++ .++|||
T Consensus 155 lyfSRs~IP~~~~~~~~~~~~~~~~hiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~~VD 234 (248)
T PRK05450 155 LYFSRAPIPWGRDAADPTAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEQIESLEQLRALENGYRIHVAVVDEAPSPGVD 234 (248)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 05542678754443212355551689998860099999987469981465652699999985995799996789999977
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
||+||++|+++|++
T Consensus 235 T~eDl~~v~~~lkk 248 (248)
T PRK05450 235 TPEDLERVRALLAK 248 (248)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 99999999998666
No 2
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=100.00 E-value=0 Score=521.77 Aligned_cols=232 Identities=48% Similarity=0.721 Sum_probs=219.9
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5699981776788898850000067226689999999679-986999868330001000122222222223456520489
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIF 87 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ 87 (268)
||+++|||||+|+|||||||++|+|+|||+||+++|++++ +++|||||||++|+++|+++|++++||+++|.+||||++
T Consensus 1 k~i~iIPAR~~S~Rlp~K~L~~I~G~pmI~~v~~~a~~s~~~d~V~VATDd~eI~~~~~~~g~~~imT~~~h~~GTdRi~ 80 (239)
T cd02517 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA 80 (239)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98999758876878999730453995989999999996699884999648265553321479740104643356215999
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 99974223345210000152210100000122333210-13443211111122011003754431465145444200111
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~al 166 (268)
||++.++. ++|+|||||||+||++|++|+++++.+. +++++++|+++++.+++++.|+|+|||+++.++ +|+
T Consensus 81 ea~~~l~~--~~D~iinvQGDePli~p~~I~~~i~~~~~~~~~~v~t~~~~i~~~~~~~~~n~VKvv~~~~~-----~al 153 (239)
T cd02517 81 EVAEKLDA--DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDG-----YAL 153 (239)
T ss_pred HHHHHCCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHCCCCCEEEEECCCC-----CCH
T ss_conf 99997199--88989995187567899999999999852887559874023699889418996399978988-----511
Q ss_pred HCCCCCCCCCC-----CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 10357775311-----1223520135520023333320799821112084479899789626699845888876899999
Q gi|254780765|r 167 YFTRTKTPHGT-----GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL 241 (268)
Q Consensus 167 yfsR~~ip~~~-----~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl 241 (268)
||||++||+.. .++|+|+|||+|++++|++|.++++|++|+.|+||||||||||++|+++.+++.++|||||+||
T Consensus 154 yfSRs~IP~~~~~~~~~~~~khiGIy~f~~~~L~~f~~~~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~VDt~eDl 233 (239)
T cd02517 154 YFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDL 233 (239)
T ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
T ss_conf 03347886434565550410377655633999999873799825777608999999839806899969999898899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780765|r 242 EKVRTL 247 (268)
Q Consensus 242 ~~v~~i 247 (268)
++||++
T Consensus 234 ~~veki 239 (239)
T cd02517 234 ERVEAL 239 (239)
T ss_pred HHHHCC
T ss_conf 999709
No 3
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=518.21 Aligned_cols=239 Identities=47% Similarity=0.709 Sum_probs=228.4
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 56569998177678889885000006722668999999967998699986833000100012222222222345652048
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
+++.+++||||++|||||||||.+|+|+|||+||+++|.+|+.++|+|||||++|++.|+++|++++||+++|.|||||+
T Consensus 1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR~ 80 (247)
T COG1212 1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRL 80 (247)
T ss_pred CCCEEEEEECCHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCCCCCHHH
T ss_conf 98559998542002668997357737960789999999873787289974988999999970978996178889800899
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 99997422334521000015221010000012233321013443211111122011003754431465145444200111
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~al 166 (268)
+||+.++... +.++|||+|||+|||.|..|+.++..+.+.+++++|++.+++++++..|||.|||+++.. ++||
T Consensus 81 ~Ev~~~l~~~-~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~-----g~AL 154 (247)
T COG1212 81 AEVVEKLGLP-DDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE-----GYAL 154 (247)
T ss_pred HHHHHHCCCC-CCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCEEEEECCC-----CCEE
T ss_conf 9999965999-642999865887777979999999998737766045534337888845998279997599-----8289
Q ss_pred HCCCCCCCCCCC-----CCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCC-CCCCCCHHH
Q ss_conf 103577753111-----22352013552002333332079982111208447989978962669984588-887689999
Q gi|254780765|r 167 YFTRTKTPHGTG-----PFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDTTND 240 (268)
Q Consensus 167 yfsR~~ip~~~~-----~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~-~~~IDt~~D 240 (268)
||||++|||... ++|+|+|||+|++.+|.+|++|++|+||+.|+|||||+||||++|++..+++. ++|||||||
T Consensus 155 YFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~ED 234 (247)
T COG1212 155 YFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPED 234 (247)
T ss_pred EEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 98768787754346776436422058867999999970699605678778999998769757899841688889898899
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999997307
Q gi|254780765|r 241 LEKVRTLIPHD 251 (268)
Q Consensus 241 l~~v~~il~~~ 251 (268)
|++|+++++..
T Consensus 235 Le~v~~~~~~~ 245 (247)
T COG1212 235 LERVRKILSNN 245 (247)
T ss_pred HHHHHHHHHHH
T ss_conf 99999998751
No 4
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=100.00 E-value=0 Score=510.31 Aligned_cols=232 Identities=42% Similarity=0.667 Sum_probs=220.0
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 65699981776788898850000067226689999999679-98699986833000100012222222222345652048
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRI 86 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi 86 (268)
||++++|||||||+|||||||++|+|+|||+||+++|++++ +++|+|||||++|+++|+++|++++||+++|.+||||+
T Consensus 1 Mk~~~iIPAR~~S~R~p~K~L~~i~g~pmi~~v~~~a~~s~~~d~v~VaTdd~eI~~~~k~~g~~~i~ts~~~~~GTdRi 80 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL 80 (238)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 97899984687787899870125289699999999998468988299956842487775004632785156557714789
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 9999742233452100001522101000001223332101-344321111112201100375443146514544420011
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN-PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~-~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
+||++.+ ++|+||+||||+||++|++|+++++.+.+ +.++++|+++++.+++++.|+|.|||+++.++ +|
T Consensus 81 ~Ea~~~~----~~d~ivnvQgDePli~p~~I~~~i~~~~~~~~~~v~t~~~~~~~~~~~~n~n~vKvv~~~~~-----~~ 151 (238)
T PRK13368 81 AEVMLKI----EADIYINVQGDEPLIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNG-----DA 151 (238)
T ss_pred HHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCEEEEECCCC-----CC
T ss_conf 9998515----98789995388677899999999999983776527678741688888438985299989978-----70
Q ss_pred HHCCCCCCCCCC----CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 110357775311----1223520135520023333320799821112084479899789626699845888876899999
Q gi|254780765|r 166 LYFTRTKTPHGT----GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL 241 (268)
Q Consensus 166 lyfsR~~ip~~~----~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl 241 (268)
+||||++||+.. ..+|+|+|||+|++++|++|.++++|++|+.|+||||||||||++|+++.+++.++|||||+||
T Consensus 152 lyfSR~~ip~~~~~~~~~~~khiGiy~f~~~~L~~f~~l~~s~lE~~E~lEqLR~leng~~I~~~~~~~~~~~VDt~eDl 231 (238)
T PRK13368 152 LYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGYKIRMVEVEATSIGVDTPEDL 231 (238)
T ss_pred CCCCCCCCCCCCCCCCCHHHEEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 11452567511245420122030112211999999870899856777708999999869926799959999998799999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780765|r 242 EKVRTLI 248 (268)
Q Consensus 242 ~~v~~il 248 (268)
++||++|
T Consensus 232 ~~v~kim 238 (238)
T PRK13368 232 ERVRAIM 238 (238)
T ss_pred HHHHHHC
T ss_conf 9999859
No 5
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=435.20 Aligned_cols=228 Identities=41% Similarity=0.629 Sum_probs=216.4
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 56999817767888988500000672266899999996799869998683300010001222222222234565204899
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFE 88 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~e 88 (268)
-.++|||||++|||||||||.+|.|+|||.|+.++|..|+.++++||||++.|++.|+++|++++||+.+|.|||||++|
T Consensus 2 sF~vIIPAR~~SsRl~~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~D~E~v~~~~~~~~~~~~~T~~~H~SGTERl~E 81 (246)
T TIGR00466 2 SFVVIIPARLASSRLPGKPLEDIKGKPMIVHVLEKANESGADRVIVATDDESVAQTVKKFGIEVCLTSKDHNSGTERLAE 81 (246)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf 05898536531135898720355789368899999752363568997487269999997297189851667850468999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC
Q ss_conf 99742233452100001522101000001223332101344321111112201100375443146514544420011110
Q gi|254780765|r 89 ALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF 168 (268)
Q Consensus 89 a~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf 168 (268)
++.++... +...|||+||||||+.+..|..+.+.+-..+..+.+++.++++.++..+||.|||+++.++ +||||
T Consensus 82 ~~~~la~~-~d~~i~N~QGDEP~~~~~ii~~~~~nLA~~~~~~~~~a~ki~d~E~~~~PN~VKVvlD~~~-----~~LYF 155 (246)
T TIGR00466 82 VVEKLALK-DDEVIVNLQGDEPLIPKEIIRQVADNLAKKNVPMAALAVKIHDAEEAFNPNAVKVVLDSEG-----YALYF 155 (246)
T ss_pred HHHHHCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-----CEEEE
T ss_conf 99984789-8857998208987653899999999886304011211222221212059974799970788-----67886
Q ss_pred CCCCCCCCCC---------------CCCCCEEEEEEE-HHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCC-
Q ss_conf 3577753111---------------223520135520-02333332079982111208447989978962669984588-
Q gi|254780765|r 169 TRTKTPHGTG---------------PFYQHLGIYAYR-REALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN- 231 (268)
Q Consensus 169 sR~~ip~~~~---------------~~~~hvGIy~f~-~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~- 231 (268)
||+.|||.+. .+.+|+|||+|+ +.+|+.|++|+||.||..|.|||||.|++|-+|.+-.+...
T Consensus 156 SRs~IP~~RD~~~~~~~~~~~~~~D~~L~HiGIYgy~n~~~~~~~v~~~P~~LE~iE~LEQLR~Lyy~~kI~V~~~~~~P 235 (246)
T TIGR00466 156 SRSLIPFDRDRFAKRQEVQKVQLSDALLRHIGIYGYRNAGFIKEYVAWKPSVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 235 (246)
T ss_pred ECCCCCCCHHHHHHHCCCCEEEHHHHHHHHHCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 40215420012443055100201134454422111002479999972288740245667888887605636898750378
Q ss_pred CCCCCCHHHHH
Q ss_conf 88768999999
Q gi|254780765|r 232 AMSVDTTNDLE 242 (268)
Q Consensus 232 ~~~IDt~~Dl~ 242 (268)
+.||||+|||+
T Consensus 236 ~vGvDT~EDL~ 246 (246)
T TIGR00466 236 SVGVDTQEDLE 246 (246)
T ss_pred CCCCCCHHHCC
T ss_conf 86778623149
No 6
>pfam02348 CTP_transf_3 Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalysing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <= diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43,, catalysing the reaction:- CTP + N-acylneuraminate <= diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand.
Probab=100.00 E-value=0 Score=370.64 Aligned_cols=189 Identities=34% Similarity=0.506 Sum_probs=174.6
Q ss_pred EEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99981776788898850000067226689999999679-98699986833000100012222222222345652048999
Q gi|254780765|r 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEA 89 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea 89 (268)
+++||||+||+|||||||.+|+|+|||+||+++|++++ +++|+|||||++|.++|+++|++++||+++|.+||+|++||
T Consensus 1 i~iIpAR~~S~Rlp~K~L~~i~gkpmI~~v~~~a~~s~~~~~viVaTd~~~I~~~~~~~~~~~i~t~~~~~~gt~R~~ea 80 (197)
T pfam02348 1 IAIIPARSGSKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVATDSEEIADIAEKFGGGVVVRRGSLASGTDRFIEA 80 (197)
T ss_pred CEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 98984588887899962035299068999999999758987289954830144201232331357640235652119999
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC
Q ss_conf 97422334521000015221010000012233321013-44321111112201100375443146514544420011110
Q gi|254780765|r 90 LNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP-IVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF 168 (268)
Q Consensus 90 ~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~-~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf 168 (268)
++++.. ++++||+||||+||++|++|+++++.+.++ ...++|+++++.+.+++.|+|.||++++.++ +|+||
T Consensus 81 ~~~~~~--~~d~ivnvqgD~Pli~p~~i~~~i~~~~~~~~~~~~t~~~~~~~~~~~~~~n~vKvv~~~~~-----~alyf 153 (197)
T pfam02348 81 VKAFLA--DEEIIVNLQGDEPLLQPTSILRAIEHLREAGEDYVSTLVKPVVSSEEILNPNPLKVVLDDAG-----YALYF 153 (197)
T ss_pred HHHHCC--HHEEEEECCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCCCCCEEEECCCC-----CEEEC
T ss_conf 986434--10099965896687588999999999985898728982047378889339987499988899-----88241
Q ss_pred CCCCCCCCCC------CCCCCEEEEEEEHHHHHHHHCCCCCCCH
Q ss_conf 3577753111------2235201355200233333207998211
Q gi|254780765|r 169 TRTKTPHGTG------PFYQHLGIYAYRREALKRFTQLSPSVLE 206 (268)
Q Consensus 169 sR~~ip~~~~------~~~~hvGIy~f~~~~L~~~~~l~~t~lE 206 (268)
||+++|+..+ .+++|+|||+|++++|++|..+++|++|
T Consensus 154 sR~~iP~~~~~~~~~~~~~~h~gIY~f~~~~L~~f~~l~~s~lE 197 (197)
T pfam02348 154 SRSPIPYIRDHPAPLQLYLRHKGIYAFRKEHLIRYVIDTPSDLE 197 (197)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHCCCCCCCC
T ss_conf 37889743123255787548999989889999998768999998
No 7
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=100.00 E-value=9.5e-36 Score=243.41 Aligned_cols=211 Identities=26% Similarity=0.307 Sum_probs=157.5
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCC-----
Q ss_conf 5699981776788898850000067226689999999679-9869998683300010001222222222234565-----
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSG----- 82 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~G----- 82 (268)
||+|+||||+||+|+|||+|.+|+|+|||+|++++|++++ +++|||+|||++|.++|+++|+.++.-|++..+|
T Consensus 1 Ki~aiIpAR~gSkri~~KN~~~i~gkpLi~~~i~~a~ks~~~d~IivSTDs~~i~~~~~k~~~~~~~~Rpk~ls~d~~~~ 80 (223)
T cd02513 1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS 80 (223)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCEEEECCCHHHCCCCCCC
T ss_conf 98999867877878997004463895969999999996699550789558789754212456417973846876886780
Q ss_pred CHHHHHHHHHHCC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC---CCCCCEEEEECCC
Q ss_conf 2048999974223-34521000015221010000012233321013443211111122011003---7544314651454
Q gi|254780765|r 83 SDRIFEALNIIDS-DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPD---DPNIVKIVVASPS 158 (268)
Q Consensus 83 TdRi~ea~~~l~~-~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~---d~n~vKvi~~~~~ 158 (268)
.|.+.++++.++. ..++|+|+.||+++||+++++|+++++.+.++++|.+..+++....-... +.+.... ....
T Consensus 81 ~dvi~~~l~~~~~~~~~~d~iv~l~pTsP~r~~~~I~~~i~~~~~~k~dsl~sv~~~~~~~~~~~~~~~~~~~~-~~~~- 158 (223)
T cd02513 81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEP-VNYP- 158 (223)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEECCCCCCC-CCCC-
T ss_conf 67777899889986899899999627976278999999999998579999999985476818856762687021-3686-
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCE-EEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 44200111103577753111223520-1355200233333207998211120844798997896266998458-888768
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHL-GIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hv-GIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID 236 (268)
...+..|+. ..++|... ++|+++++.+.+...+ .|-++..+.++. ++++||
T Consensus 159 -----~~~~~~rQ~----~~~~y~~~g~~yi~~~~~~~k~~~~------------------~~~k~~~~~~~~~~siDID 211 (223)
T cd02513 159 -----EDKRTRRQD----LPPAYHENGAIYIAKREALLESNSF------------------FGGKTGPYEMPRERSIDID 211 (223)
T ss_pred -----HHHCCCCCC----CCEEEEECCEEEEEEHHHHHHCCCC------------------CCCCEEEEEECCCCEECCC
T ss_conf -----110676446----7604786048999999999854980------------------3897799994887168489
Q ss_pred CHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254780765|r 237 TTNDLEKVRTLI 248 (268)
Q Consensus 237 t~~Dl~~v~~il 248 (268)
|++||+.||.+|
T Consensus 212 ~~~Dl~~Ae~ll 223 (223)
T cd02513 212 TEEDFELAEALL 223 (223)
T ss_pred CHHHHHHHHHHC
T ss_conf 999999999869
No 8
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=100.00 E-value=3.4e-35 Score=239.92 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=141.1
Q ss_pred EEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECC----CCCHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99981776788898850000067226689999999679-986999868----3300010001222222222234565204
Q gi|254780765|r 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVD----DTKINEIVLQAGFESVMTHTSHQSGSDR 85 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTd----d~~I~~~~~~~g~~~i~t~~~~~~GTdR 85 (268)
+|+|||||||+|||||+|.+|+|+|||+|+++|+++++ +++|+|||+ |+.++++|++.|++++. ++..+.++|
T Consensus 1 i~iI~aR~~S~RLp~K~L~~i~~~~~i~~~i~r~k~~~~~~~IivaTs~~~~Dd~l~~~~~~~~i~~fr--Gs~~dvl~R 78 (233)
T cd02518 1 VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFR--GSEEDVLGR 78 (233)
T ss_pred CEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCEEEEE--CCCCHHHHH
T ss_conf 989960778837898600230995799999999996689884999817865226999999748489995--783058899
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 89999742233452100001522101000001223332101344321111112201100375443146514544420011
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
+++|++.. ++++||++|||+||++|+.|+.+++.+.++++|+++...+...|.... |.++. ..+
T Consensus 79 ~~~a~~~~----~~d~ivri~gD~P~idp~~id~~i~~~~~~~~Dyvsn~~~~~~P~G~~----~ei~s--------~~~ 142 (233)
T cd02518 79 YYQAAEEY----NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD----VEVFT--------RDA 142 (233)
T ss_pred HHHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEE----EEEEH--------HHH
T ss_conf 99998715----788899976877758989999999998507999894478998888169----99881--------999
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 11035777531112235201355200233333207998211120844798997896266998458888768999999999
Q gi|254780765|r 166 LYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVR 245 (268)
Q Consensus 166 lyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~ 245 (268)
|- +............|++.|.|+..-+-+...++..+ +.. +.-.++|||++||+.++
T Consensus 143 L~--~~~~~~~~~~~rEHvt~y~~~n~~~fki~~~~~~~----~~~-----------------~~~rltlD~~eD~~~~~ 199 (233)
T cd02518 143 LE--RAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPP----DRL-----------------SDLRLTVDTPEDFELIK 199 (233)
T ss_pred HH--HHHHHCCCCCCCCCCHHHHHHCCHHCEEEEECCCC----CCC-----------------CCCEEEECCHHHHHHHH
T ss_conf 99--99974478442100039988492022488744874----346-----------------55569836899999999
Q ss_pred HHHHC
Q ss_conf 99730
Q gi|254780765|r 246 TLIPH 250 (268)
Q Consensus 246 ~il~~ 250 (268)
++++.
T Consensus 200 ~I~~~ 204 (233)
T cd02518 200 EIYEA 204 (233)
T ss_pred HHHHH
T ss_conf 99998
No 9
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=100.00 E-value=9.9e-33 Score=224.56 Aligned_cols=208 Identities=21% Similarity=0.235 Sum_probs=154.1
Q ss_pred EEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCC-----H
Q ss_conf 99981776788898850000067226689999999679-98699986833000100012222222222345652-----0
Q gi|254780765|r 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGS-----D 84 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GT-----d 84 (268)
+|+||||+||+|+|+|++.+|+|+||++|++++|++++ +++|+|+|||++|++.|+++|+++..-|+++.++. +
T Consensus 1 laiIPaR~gSkri~~KN~~~~~g~pLi~~~i~~~~~s~~~d~i~vSTD~~~i~~ia~~~~~~~~~~Rp~~ls~d~~~~~~ 80 (222)
T TIGR03584 1 IAIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDEVVVSTDDEEIAEVAKSYGASVPFMRPAELSDDFTGTAP 80 (222)
T ss_pred CEEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEECCHHHCCCCCHHHH
T ss_conf 98984377887678601256589285999999998579965388727889987555216986425186555588621459
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH-HH---CCCCCCCEEEEECCCCC
Q ss_conf 489999742233452100001522101000001223332101344321111112201-10---03754431465145444
Q gi|254780765|r 85 RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGS-TD---PDDPNIVKIVVASPSEN 160 (268)
Q Consensus 85 Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~-~~---~~d~n~vKvi~~~~~~~ 160 (268)
-+.++++.++...++++++.||+++||+++++|+++++.+.++++|.+..+++...+ .. +.+.+.++....
T Consensus 81 vi~~~l~~~~~~~~~d~i~~l~pTsP~r~~~~I~~ai~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~~~~~~~~~----- 155 (222)
T TIGR03584 81 VVAHAIERLQLQKQPDHACCIYATAPLLQAKILKEAFELLKQPNKHFVFTVTEFAFPIQRAFSLKENGGVTMFFP----- 155 (222)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHEEECCCCCEEECCH-----
T ss_conf 999999999865899989995489761589999999999972699855065337768589379867994633474-----
Q ss_pred CCHHHHHCCC-CCCCCCCCCCCCCE-EEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEEC-CCCCCCCC
Q ss_conf 2001111035-77753111223520-135520023333320799821112084479899789626699845-88887689
Q gi|254780765|r 161 GCFRALYFTR-TKTPHGTGPFYQHL-GIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ-SNAMSVDT 237 (268)
Q Consensus 161 ~~~~alyfsR-~~ip~~~~~~~~hv-GIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~-~~~~~IDt 237 (268)
.. +.+| +..| +.|... ++|+++++.+.+...+ -|.+...+.++ ..+++|||
T Consensus 156 ---~~-~~~r~Qdl~----~~y~~~G~~y~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~siDID~ 209 (222)
T TIGR03584 156 ---EH-YNTRSQDLE----EAYHDAGQFYWGKSQAWLESGPI------------------FSPHSIPIILPRHLVQDIDT 209 (222)
T ss_pred ---HH-HHHHHHHCC----CCEEECCEEEEEEHHHHHHCCCC------------------CCCCEEEEEECCCCCCCCCC
T ss_conf ---55-202444244----33754478999889999844970------------------28987999989986289999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780765|r 238 TNDLEKVRTLIP 249 (268)
Q Consensus 238 ~~Dl~~v~~il~ 249 (268)
++||+.||.+++
T Consensus 210 ~~D~~~Ae~l~K 221 (222)
T TIGR03584 210 LEDWERAELLYK 221 (222)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999867
No 10
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.1e-30 Score=206.75 Aligned_cols=213 Identities=21% Similarity=0.211 Sum_probs=156.9
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCC-CCCH
Q ss_conf 565699981776788898850000067226689999999679-98699986833000100012222222222345-6520
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQ-SGSD 84 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~-~GTd 84 (268)
|++++|+||||.||+|+|+|++.+++|+|||.|++++|+.|+ +|+|+|+||+++|.+.++++|.++.+.|+++. +++.
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a 80 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA 80 (228)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCH
T ss_conf 96148997626788768763357757961589999998658852269984795899999987276110248745416721
Q ss_pred ----HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH---HHCCCCCCCEEEEECC
Q ss_conf ----489999742233452100001522101000001223332101344321111112201---1003754431465145
Q gi|254780765|r 85 ----RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGS---TDPDDPNIVKIVVASP 157 (268)
Q Consensus 85 ----Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~---~~~~d~n~vKvi~~~~ 157 (268)
-+.++...+ ....+.+++||+.+||++..+|+++++.|.++.++.+..++++... .-..+.+.|+-+...
T Consensus 81 st~~~~lh~le~~--~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~~- 157 (228)
T COG1083 81 STIDAALHALESF--NIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNED- 157 (228)
T ss_pred HHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCEEECCCC-
T ss_conf 6789999999874--4245706884068500014579999999965887635887532234688887507844101147-
Q ss_pred CCCCCHHHHHCC-CCCCCCCCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEE-CCCCCC
Q ss_conf 444200111103-5777531112235201-3552002333332079982111208447989978962669984-588887
Q gi|254780765|r 158 SENGCFRALYFT-RTKTPHGTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIV-QSNAMS 234 (268)
Q Consensus 158 ~~~~~~~alyfs-R~~ip~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~-~~~~~~ 234 (268)
..+++ |+..| +.|+--| +|.++++.|.+=. -+|. -....+.+ ...+++
T Consensus 158 -------~~~~~rrQ~Lp----k~Y~~NgaiYi~~~~~l~e~~---------------~~f~---~~~~~y~m~~~~~~D 208 (228)
T COG1083 158 -------PDFETRRQDLP----KAYRENGAIYINKKDALLEND---------------CFFI---PNTILYEMPEDESID 208 (228)
T ss_pred -------CCCCCCCCCCH----HHHHHCCCEEEEHHHHHHHCC---------------CEEC---CCCEEEECCCCCCCC
T ss_conf -------76554211051----656536767975279874157---------------5415---896689817120005
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 68999999999997307
Q gi|254780765|r 235 VDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 235 IDt~~Dl~~v~~il~~~ 251 (268)
|||+.||+.||.++...
T Consensus 209 ID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 209 IDTELDLEIAENLIFLK 225 (228)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 66087699999986564
No 11
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=6.2e-30 Score=207.13 Aligned_cols=196 Identities=24% Similarity=0.351 Sum_probs=137.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCC----CHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 565699981776788898850000067226689999999679-98699986833----0001000122222222223456
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDT----KINEIVLQAGFESVMTHTSHQS 81 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~----~I~~~~~~~g~~~i~t~~~~~~ 81 (268)
|++|++||+|||||+|||||+|.+++|.|||.++++|.++|. +++++|||.++ -++++|.+.|..|+ +
T Consensus 1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vf-------r 73 (241)
T COG1861 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVF-------R 73 (241)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEE-------C
T ss_conf 984798853002676578613333078741999999986043324358973477204579999997082476-------3
Q ss_pred CC-----HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEC
Q ss_conf 52-----0489999742233452100001522101000001223332101344321111112201100375443146514
Q gi|254780765|r 82 GS-----DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVAS 156 (268)
Q Consensus 82 GT-----dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~ 156 (268)
|+ +|+..|++.. .++.||+|.||+||++|+.+|..+..+.++++|+++.... +... .|.++.
T Consensus 74 Gs~~dVL~Rf~~a~~a~----~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~---p~G~----~vEV~~-- 140 (241)
T COG1861 74 GSEEDVLQRFIIAIKAY----SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGA---PLGT----DVEVMK-- 140 (241)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC---CCCC----CEEEEE--
T ss_conf 88899999999999735----8876999608998778899999999998659860136687---6655----315543--
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 54442001111035777531112235201355200233333207998211120844798997896266998458888768
Q gi|254780765|r 157 PSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVD 236 (268)
Q Consensus 157 ~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~ID 236 (268)
.++|- ++........+..|++.|.++.--+-+ ...+|-.|.. .-+.-.|.||
T Consensus 141 ------a~~L~--~a~k~~~e~~~rEhvT~yi~n~P~~fk-----~~~l~~p~~~---------------~~~~~RltvD 192 (241)
T COG1861 141 ------ARALK--KAAKEALEAYYREHVTPYIRNNPERFK-----VAYLEAPEAW---------------KRPDYRLTVD 192 (241)
T ss_pred ------HHHHH--HHHHHCCCHHHHHCCCHHHHHCCCEEE-----EEEECCHHHC---------------CCCCEEEEEC
T ss_conf ------57899--867642344666416899870976078-----9765473222---------------6876478846
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
|+|||+.+..++++
T Consensus 193 t~eD~~~~~~vye~ 206 (241)
T COG1861 193 TQEDFALAKAVYEY 206 (241)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 39999999999997
No 12
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882 N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=99.94 E-value=2e-25 Score=178.98 Aligned_cols=223 Identities=21% Similarity=0.328 Sum_probs=162.4
Q ss_pred EEEEEC-----CCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCCCCC---CCCCCCCCCCC
Q ss_conf 999817-----7678889885000006722668999999967998699986833--0001000122---22222222345
Q gi|254780765|r 11 LVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIVLQAG---FESVMTHTSHQ 80 (268)
Q Consensus 11 ~~iIpA-----R~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~~~g---~~~i~t~~~~~ 80 (268)
-++|.| ||.|. +| |+||+|+|||||+||++.|.+...++|.|+.+|+ ++.+...+.. ++++.+.+.
T Consensus 2 ~~vILAAGkGTRMkS~-lP-KVLH~laGkpMl~hVi~~A~~L~~~~i~vV~GH~~~~V~~~l~~~~d~t~~~v~Q~~q-- 77 (461)
T TIGR01173 2 SVVILAAGKGTRMKSK-LP-KVLHPLAGKPMLEHVIDAARKLSPEKIHVVLGHGAEQVRKALAEENDKTVNWVLQAEQ-- 77 (461)
T ss_pred EEEEEECCCCCCCCCC-CC-CCCCHHHCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCC--
T ss_conf 3899806888311138-68-6012010322789999998537834159998168699999850379967999996889--
Q ss_pred CC-C-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHH-HHHHHHCC-CCCCCCCCCCCCCCHHHC-----CC-CCCC
Q ss_conf 65-2-04899997422334521000015221010000012-23332101-344321111112201100-----37-5443
Q gi|254780765|r 81 SG-S-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILA-SVLLPLQN-PIVDIGTLGTRIHGSTDP-----DD-PNIV 150 (268)
Q Consensus 81 ~G-T-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id-~~i~~~~~-~~~dv~tl~~~~~~~~~~-----~d-~n~v 150 (268)
-| | +.+..|...|..+.+. -|+.|+||+|||++++|. +|++.... +...++.|++.+.+|.-| ++ -.+.
T Consensus 78 lGGTGHAv~~a~~~l~~~~~~-~vLvLyGDvPLi~~eTL~m~Ll~~~~~~~~~~~tlLt~~l~DP~GYGRI~r~~~g~V~ 156 (461)
T TIGR01173 78 LGGTGHAVLQALPFLSEDDDG-RVLVLYGDVPLISAETLEMRLLESHRQLNGAKVTLLTAKLEDPTGYGRIIRENDGAVQ 156 (461)
T ss_pred CCCHHHHHHHHCCCCCCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEECCCCCEE
T ss_conf 787289998711678886686-0899958878775677877988863000104517999871888954358984899589
Q ss_pred EEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCH-HHHHHHHC-CCEEEEEE
Q ss_conf 146514544420011110357775311122352013552002333332-0799821112084-47989978-96266998
Q gi|254780765|r 151 KIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESL-EQLRALEA-RMRIDVKI 227 (268)
Q Consensus 151 Kvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~l-EqLR~len-g~~I~~~~ 227 (268)
++|-.++- +... |+.-.-+. |||||...+|+++- .+.+.+-+.+--| |-.-+.-+ |..+..+.
T Consensus 157 ~IVE~KDA-~~eq------k~I~eiNt-------G~y~~~~~~L~~~L~~l~n~NaqgEYYLTD~ia~a~~~g~~v~~~~ 222 (461)
T TIGR01173 157 AIVEEKDA-NEEQ------KAIKEINT-------GVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGEEVRAVQ 222 (461)
T ss_pred EEECCCCC-CHHH------HCCCEEEE-------EEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 99733598-8698------03527888-------7999832899988876287704443147899999850894789998
Q ss_pred ECC--CCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 458--8887689999999999973072
Q gi|254780765|r 228 VQS--NAMSVDTTNDLEKVRTLIPHDH 252 (268)
Q Consensus 228 ~~~--~~~~IDt~~Dl~~v~~il~~~~ 252 (268)
+.. +..|||+.-+|..+|++|+..-
T Consensus 223 ~~d~~E~~GvNdR~qLa~lE~~~q~r~ 249 (461)
T TIGR01173 223 VDDSEEVLGVNDRLQLAQLERILQRRI 249 (461)
T ss_pred ECCHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 087598336679889999999999999
No 13
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.90 E-value=1.7e-22 Score=160.75 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=146.0
Q ss_pred EEEECCCCCCCC----CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCCCCCCCCCCCCCCCC-H
Q ss_conf 998177678889----8850000067226689999999679986999868--33000100012222222222345652-0
Q gi|254780765|r 12 VIIPARLNSMRF----PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAGFESVMTHTSHQSGS-D 84 (268)
Q Consensus 12 ~iIpAR~~S~Rl----p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g~~~i~t~~~~~~GT-d 84 (268)
|||||-+..||| | |||++|+|+|||+|+++.+..+++++++++|+ .+.|.++....++.++. ++...|| +
T Consensus 1 AvIlAaG~GtRl~~~~P-Kpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~e~i~~~~~~~~i~~v~--Q~~~lGta~ 77 (229)
T cd02540 1 AVILAAGKGTRMKSDLP-KVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVL--QEEQLGTGH 77 (229)
T ss_pred CEEECCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEEE--ECCCCCCHH
T ss_conf 98946878757998978-415189987999999999997699759963576899999875438726998--068897378
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHH
Q ss_conf 48999974223345210000152210100000122333210134432111111220110037544314651454442001
Q gi|254780765|r 85 RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFR 164 (268)
Q Consensus 85 Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~ 164 (268)
.+..|...++... +.++.+.||.||+.+.++..+++.+.+.+.+++.++....++..+- .++.+.++ +
T Consensus 78 Av~~a~~~i~~~~--~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG-----~v~~d~~g-----~ 145 (229)
T cd02540 78 AVKQALPALKDFE--GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYG-----RIIRDGNG-----K 145 (229)
T ss_pred HHHHHHHHCCCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-----EEEECCCC-----C
T ss_conf 9999987445888--7299995896453678899999999965996699998604876786-----79988999-----7
Q ss_pred HHHCC--CCCCCCCCCCCCCCEEEEEEEHHHHHHH-HCCCCCC----CHHHCCHHHHHHHHCCCEEEEEEECC--CCCCC
Q ss_conf 11103--5777531112235201355200233333-2079982----11120844798997896266998458--88876
Q gi|254780765|r 165 ALYFT--RTKTPHGTGPFYQHLGIYAYRREALKRF-TQLSPSV----LEQRESLEQLRALEARMRIDVKIVQS--NAMSV 235 (268)
Q Consensus 165 alyfs--R~~ip~~~~~~~~hvGIy~f~~~~L~~~-~~l~~t~----lE~~E~lEqLR~leng~~I~~~~~~~--~~~~I 235 (268)
..-|- +...|......+--.|+|.|+++.|.++ ..+++++ .|..+-+. .++++|++|.++.++. +.+||
T Consensus 146 v~~ivEkk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~--~~i~~g~kv~~~~~~~~~~~~Gi 223 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIA--LAVADGLKVAAVLADDEEEVLGV 223 (229)
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHH--HHHHCCCCEEEEEECCHHHEECC
T ss_conf 8999988787654345432222799985999999998479876688788999999--99988991899992887661378
Q ss_pred CCHHHH
Q ss_conf 899999
Q gi|254780765|r 236 DTTNDL 241 (268)
Q Consensus 236 Dt~~Dl 241 (268)
||++||
T Consensus 224 n~~~dl 229 (229)
T cd02540 224 NDRVQL 229 (229)
T ss_pred CCHHHC
T ss_conf 897879
No 14
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=2.2e-21 Score=153.73 Aligned_cols=226 Identities=21% Similarity=0.298 Sum_probs=155.0
Q ss_pred CEEEEEEC-----CCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCCCC-CCCCCCCCCCCC
Q ss_conf 56999817-----7678889885000006722668999999967998699986833--000100012-222222222345
Q gi|254780765|r 9 KVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIVLQA-GFESVMTHTSHQ 80 (268)
Q Consensus 9 ki~~iIpA-----R~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~~~-g~~~i~t~~~~~ 80 (268)
...++|.| ||+|. +| |+||+++|+||++||++.|.....++++|+.++. ++.+...+. ..+++.+. -+
T Consensus 2 ~~~~vILAAGkGTRMkS~-lP-KVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~--eq 77 (460)
T COG1207 2 SLSAVILAAGKGTRMKSD-LP-KVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERDDVEFVLQE--EQ 77 (460)
T ss_pred CCEEEEEECCCCCCCCCC-CC-CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEC--CC
T ss_conf 616999944887534579-84-111001680089999998762686618999868778999875635473399962--55
Q ss_pred CCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC----C-CCCCEEEE
Q ss_conf 6520-4899997422334521000015221010000012233321013443211111122011003----7-54431465
Q gi|254780765|r 81 SGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPD----D-PNIVKIVV 154 (268)
Q Consensus 81 ~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~----d-~n~vKvi~ 154 (268)
-||. .+..|...+..+.+.+ ++.|+||.|||+++++..++..+......+..+...+.+|..|- + ...|.-|.
T Consensus 78 lGTgHAV~~a~~~l~~~~~g~-vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IV 156 (460)
T COG1207 78 LGTGHAVLQALPALADDYDGD-VLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIV 156 (460)
T ss_pred CCHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEE
T ss_conf 873899996667640478973-8999699666789999999986340377559999873899875469993998699999
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCC-H-HHHHHH-HCCCEEEEEEECC-
Q ss_conf 14544420011110357775311122352013552002333332079982111208-4-479899-7896266998458-
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRES-L-EQLRAL-EARMRIDVKIVQS- 230 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~-l-EqLR~l-eng~~I~~~~~~~- 230 (268)
....-+.. -|+.-.- --|+|||....|.++-..-.+.+.+-|- | |-+-+. +.|.++.++.++.
T Consensus 157 E~KDA~~e------ek~I~ei-------NtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~ 223 (460)
T COG1207 157 EEKDASEE------EKQIKEI-------NTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDE 223 (460)
T ss_pred ECCCCCHH------HHCCCEE-------EEEEEEECHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 74789978------9508388-------2068998679999999872566655748689999999857976999966966
Q ss_pred -CCCCCCCHHHHHHHHHHHHCCH
Q ss_conf -8887689999999999973072
Q gi|254780765|r 231 -NAMSVDTTNDLEKVRTLIPHDH 252 (268)
Q Consensus 231 -~~~~IDt~~Dl~~v~~il~~~~ 252 (268)
+..+||+.-.|..+|++|+...
T Consensus 224 ~E~~GVN~R~qLa~~e~~~q~r~ 246 (460)
T COG1207 224 EEVLGVNDRVQLAEAERIMQRRI 246 (460)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 88627674999999999999999
No 15
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.87 E-value=1e-20 Score=149.62 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=140.7
Q ss_pred CCEEEEEEC-----CCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 656999817-----767888988500000672266899999996799869998683--3000100012222222222345
Q gi|254780765|r 8 EKVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQAGFESVMTHTSHQ 80 (268)
Q Consensus 8 ~ki~~iIpA-----R~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~~g~~~i~t~~~~~ 80 (268)
+..-+||.| ||.|+ .| |||++|+|+|||+|++++++..++++++|+++. +++.++....+++++.+ +-+
T Consensus 4 ~~m~aVILAAGkGTRM~s~-~P-KvL~pi~gkPml~hvi~~l~~~g~~~ivvVvg~~~e~i~~~~~~~~i~~v~Q--~eq 79 (456)
T PRK09451 4 SAMSVVILAAGKGTRMYSD-LP-KVLHTLAGKPMVQHVIDAANELGAAHVHLVYGHGGDLLKQTLKDEPLNWVLQ--AEQ 79 (456)
T ss_pred CCCEEEEECCCCCCCCCCC-CC-HHHHEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE--CCC
T ss_conf 8753999857787777999-79-5750448986999999999876998099996998799998744588449995--888
Q ss_pred CCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC-----CCCCCEEEE
Q ss_conf 6520-4899997422334521000015221010000012233321013443211111122011003-----754431465
Q gi|254780765|r 81 SGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPD-----DPNIVKIVV 154 (268)
Q Consensus 81 ~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~-----d~n~vKvi~ 154 (268)
.||. .+..|...+.. .+.++.|.||.||++++++..+++...+. +++.+.....+|..|- |-.+.+++
T Consensus 80 lGTghAV~~A~~~l~~---~~~vLVl~GD~PLi~~~tl~~l~~~~~~~--~~~llt~~~~dP~~YGrIi~~~g~v~~IV- 153 (456)
T PRK09451 80 LGTGHAMQQAAPFFAD---DEDILMLYGDVPLISVETLQRLRDAKPQG--GIGLLTVKLDNPTGYGRITRENGKVVGIV- 153 (456)
T ss_pred CCCHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHCCCC--CEEEEEEECCCCCCCEEEEECCCCEEEEE-
T ss_conf 9729999998886066---88589995980156999999998625138--85999997689654648994389579999-
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHC-CH-HHHH-HHHCCCEEEEEEECC
Q ss_conf 14544420011110357775311122352013552002333332-07998211120-84-4798-997896266998458
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRE-SL-EQLR-ALEARMRIDVKIVQS 230 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E-~l-EqLR-~leng~~I~~~~~~~ 230 (268)
.+.. .-|....-..---|||+|+.+.|.++. .+.+ ++.+.| -| |.+. +.+.|+.+..+....
T Consensus 154 E~kd-------------a~~~e~~i~eiNaGIy~f~~~~l~~~L~~i~~-~n~~gEyyLTDii~~~~~~g~~v~~v~~~~ 219 (456)
T PRK09451 154 EHKD-------------ATDEQRQIQEINTGILVANGADLKRWLAKLTN-NNAQGEYYITDIIALAYQEGREIVAVHPTR 219 (456)
T ss_pred ECCC-------------CCHHHHCCCEECCEEEEECHHHHHHHHHHCCC-CCCCCCEEECHHHHHHHHCCCEEEEEECCC
T ss_conf 8267-------------98455211122024899579999998875067-554562563056788874695799998288
Q ss_pred --CCCCCCCHHHHHHHHHHHHCC
Q ss_conf --888768999999999997307
Q gi|254780765|r 231 --NAMSVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 231 --~~~~IDt~~Dl~~v~~il~~~ 251 (268)
+..+||++.||..++++++..
T Consensus 220 ~~e~~GvN~~~~La~~e~~~~~~ 242 (456)
T PRK09451 220 LSEVEGVNNRLQLARLERVYQAE 242 (456)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 79944679899999989999998
No 16
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.81 E-value=1.3e-18 Score=136.52 Aligned_cols=217 Identities=20% Similarity=0.272 Sum_probs=141.2
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCC---CCCCCCCCCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--30001000---1222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVL---QAGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~---~~g~~~i~t~~~~ 79 (268)
|+|+|-+..||| | |||.+|+|+|||+|++++++.+++++|+|+|+. ++|.++.. .++.+.....++.
T Consensus 3 aiILAaG~GtRl~p~t~~~P-K~Ll~i~gkpli~~~i~~l~~~gi~~Iiiv~~~~~~~i~~~~~~~~~~~~~i~~v~~~~ 81 (236)
T cd04189 3 GLILAGGKGTRLRPLTYTRP-KQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEE 81 (236)
T ss_pred EEEECCCCCCCCCCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99988868768870007998-02038998609999999999869958999854141220122346664787548986215
Q ss_pred CCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 5652-048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 80 QSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 80 ~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
..|| ..+..|.+.+. +.+++| +.||.- ++ ..+.+++..+.+.+++...++.+..++..+. . +.++ ++
T Consensus 82 ~~Gt~~al~~a~~~l~---~~~~iv-~~gD~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~g---~--~~~~-~~ 149 (236)
T cd04189 82 PLGLAHAVLAARDFLG---DEPFVV-YLGDNL-IQ-EGISPLVRDFLEEDADASILLAEVEDPRRFG---V--AVVD-DG 149 (236)
T ss_pred CCCHHHHHHHHHHHCC---CCCEEE-EECCCE-EC-CCHHHHHHHHHHCCCCCEEEEEEEECCCCCC---E--EEEC-CC
T ss_conf 5324578777665148---997589-727946-54-6899999999862786114789862466762---8--9973-62
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCC---CHHHCCHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 4420011110357775311122352013552002333332079982---1112084479899789626699845888876
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSV---LEQRESLEQLRALEARMRIDVKIVQSNAMSV 235 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~---lE~~E~lEqLR~leng~~I~~~~~~~~~~~I 235 (268)
+..-|.-. |......+--.|+|.|+++++..+..+.++. .+..+-+ .+++++|.+|.++.+++...+|
T Consensus 150 -----~v~~i~eK--~~~~~~~~~~~Giy~f~~~i~~~~~~~~~~~~~e~~i~d~i--~~li~~g~~v~~~~~~g~W~Di 220 (236)
T cd04189 150 -----RIVRLVEK--PKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAI--QWLIDRGRRVGYSIVTGWWKDT 220 (236)
T ss_pred -----EEEECCCC--CCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCEEHHHHH--HHHHHCCCCEEEEEECCEEEEC
T ss_conf -----35431325--88987675999999999899999984799878813389999--9999879988999719979979
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 899999999999730
Q gi|254780765|r 236 DTTNDLEKVRTLIPH 250 (268)
Q Consensus 236 Dt~~Dl~~v~~il~~ 250 (268)
+||+||.+|++++.+
T Consensus 221 gtpedl~~A~~~l~~ 235 (236)
T cd04189 221 GTPEDLLEANRLLLD 235 (236)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 899999999899871
No 17
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=99.79 E-value=1.5e-18 Score=136.00 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=159.3
Q ss_pred EEEECCCCCCCC-C-----CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC---CCCHHHHCC---CCCCC--CCCCCC
Q ss_conf 998177678889-8-----850000067226689999999679986999868---330001000---12222--222222
Q gi|254780765|r 12 VIIPARLNSMRF-P-----KKILADINGLPMILHTAIRARKANIGRVIVAVD---DTKINEIVL---QAGFE--SVMTHT 77 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p-----~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd---d~~I~~~~~---~~g~~--~i~t~~ 77 (268)
|+|+|-+.-||| | -|.|.+++|||+++|.++...++++.+|-|+.+ .++|.+++. .+|++ +|.+++
T Consensus 2 aliL~aG~GTRLRPLTFt~pK~LiPvAnKPi~~Yaie~~~~AGI~diGIvvg~~~~e~i~~~~g~g~~fg~kityI~Q~~ 81 (361)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLIEAGITDIGIVVGPETGEEIKEIVGEGERFGAKITYIVQGE 81 (361)
T ss_pred CEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHEEEECCCCCCCEEEEEEECCC
T ss_conf 24425878676777665788430661687323676888874697699998469882122023248830232898982278
Q ss_pred CCCCCCHHHHHHHHHH-CC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH-----CC--CCC
Q ss_conf 3456520489999742-23-345210000152210100000122333210134432111111220110-----03--754
Q gi|254780765|r 78 SHQSGSDRIFEALNII-DS-DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD-----PD--DPN 148 (268)
Q Consensus 78 ~~~~GTdRi~ea~~~l-~~-~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~-----~~--d~n 148 (268)
.-| +|+|+-.. +. -.+.|+||-| ||.-| .+.|.+.++.|.+.++|...|.++..+|.. ++ .+.
T Consensus 82 --plG---lAHAv~~A~~fGlgd~~FvvYL-GDNl~--~~gi~~fv~~F~~~~~da~ILL~~V~dP~~FGVA~l~d~G~~ 153 (361)
T TIGR01208 82 --PLG---LAHAVYVARDFGLGDEDFVVYL-GDNLI--QDGIKRFVKSFEEKDYDALILLKKVEDPTAFGVAELEDDGKR 153 (361)
T ss_pred --CCH---HHHHHHHHHHHCCCCCCEEEEC-CCCHH--HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCE
T ss_conf --760---4676457888478998607973-74210--423789988533148003011043887884555899248979
Q ss_pred CCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEH--HHHHHHHCCCCC---CCHHHCCHHHHHHHHCCCEE
Q ss_conf 4314651454442001111035777531112235201355200--233333207998---21112084479899789626
Q gi|254780765|r 149 IVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRR--EALKRFTQLSPS---VLEQRESLEQLRALEARMRI 223 (268)
Q Consensus 149 ~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~--~~L~~~~~l~~t---~lE~~E~lEqLR~leng~~I 223 (268)
++|+| .+-.+-. ..+--+|+|+|++ ..-+-+.+++|| +||..-.|++| ||||+++
T Consensus 154 i~~Lv-EKPk~PP-----------------SNLAvvGlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~l--Ie~Gy~V 213 (361)
T TIGR01208 154 ILKLV-EKPKEPP-----------------SNLAVVGLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYL--IEKGYKV 213 (361)
T ss_pred EEEEE-ECCCCCC-----------------CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHCCCEE
T ss_conf 99988-3386578-----------------77012334533877798889852888776621577577565--3158377
Q ss_pred EEEEECCCCCCCCC--HHHHHHHHHHHHCCHH
Q ss_conf 69984588887689--9999999999730724
Q gi|254780765|r 224 DVKIVQSNAMSVDT--TNDLEKVRTLIPHDHH 253 (268)
Q Consensus 224 ~~~~~~~~~~~IDt--~~Dl~~v~~il~~~~~ 253 (268)
....+. +|.-|| +|||-.|.+++-....
T Consensus 214 ~~~~v~--GWWkDTGk~eDLL~AN~~iLd~~~ 243 (361)
T TIGR01208 214 GGSKVK--GWWKDTGKPEDLLDANRLILDEEV 243 (361)
T ss_pred EEEEEE--EEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 779997--887015980238999999744322
No 18
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.73 E-value=1.8e-16 Score=123.01 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=139.6
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCC----CCCCCCCCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--30001000----122222222223
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVL----QAGFESVMTHTS 78 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~----~~g~~~i~t~~~ 78 (268)
|||+|-+..||| | |||.+|+|+|||+|+++++..+++++|+++|.. +.|.++.. ++|.++..+.++
T Consensus 3 avIlagG~GtRl~plT~~~P-KpLlpv~gkpli~~~i~~l~~~gi~~iii~~~y~~~~i~~~~~~~~~~~~~~i~~~~e~ 81 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVP-KPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIET 81 (233)
T ss_pred EEEECCCCCCCCCCHHCCCC-CCCCEECCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99988977657880132998-30108999869999999999859973210112357799999987777439605652257
Q ss_pred CCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf 45652-04899997422334521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r 79 HQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 79 ~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~ 157 (268)
..-|| +.+..|...+..+.+ .+ +.+.||. +.+ ..+..+++.+..+..++..++.+..++..+- . +.++.+
T Consensus 82 ~~lGtagal~~a~~~i~~~~~-~f-lVlngD~-~~~-~~l~~~~~~h~~~~~~~ti~~~~~~~~~~yG---v--~~~d~~ 152 (233)
T cd06425 82 EPLGTAGPLALARDLLGDDDE-PF-FVLNSDV-ICD-FPLAELLDFHKKHGAEGTILVTKVEDPSKYG---V--VVHDEN 152 (233)
T ss_pred CCCCCHHHHHHHHHHHCCCCC-CE-EEECCCH-HCC-HHHHHHHHHHHHCCCCEEEEEEECCCHHHCC---E--EEECCC
T ss_conf 666721699999998468998-68-9977832-102-0369999999855898499999767845568---0--886687
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 44420011110357775311122352013552002333332079982111208447989978962669984588887689
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDT 237 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt 237 (268)
. +++..|.-.|. .....+--.|+|.|++++|..+. ..++.+| .++ +-++++.| ++.++..++..++|.|
T Consensus 153 ~----g~v~~f~EKP~--~~~~~~i~~Giyi~~~~i~~~i~-~~~~~~~--~di-~~~l~~~~-~v~~~~~~g~W~DiGt 221 (233)
T cd06425 153 T----GRIERFVEKPK--VFVGNKINAGIYILNPSVLDRIP-LRPTSIE--KEI-FPKMASEG-QLYAYELPGFWMDIGQ 221 (233)
T ss_pred C----CCCCCEEECCC--CCCCCCEEEEEEEECHHHHHHCC-CCCCCCH--HHH-HHHHHHCC-CEEEEEECCEEEECCC
T ss_conf 6----74222037788--88898703689999899996566-6888746--999-99998479-9799985999994979
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q gi|254780765|r 238 TNDLEKVRTLI 248 (268)
Q Consensus 238 ~~Dl~~v~~il 248 (268)
|+|+.+|.+++
T Consensus 222 p~~~l~A~~~~ 232 (233)
T cd06425 222 PKDFLKGMSLY 232 (233)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999986
No 19
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.72 E-value=3.1e-16 Score=121.59 Aligned_cols=208 Identities=16% Similarity=0.189 Sum_probs=130.2
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHC---CCCCCCCCCCCCCC
Q ss_conf 998177678889-------8850000067226689999999679986999868--33000100---01222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIV---LQAGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~---~~~g~~~i~t~~~~ 79 (268)
++|+|-+..||| | |+|.+|+|+|||+|+++.++..++++|+|+|+ .++|.++. +.++++.....++.
T Consensus 1 viILAaG~GtRl~plT~~~P-K~Ll~i~gkpli~~~i~~l~~~gi~~i~i~~~y~~e~i~~~~~~~~~~~~~i~~i~e~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTP-KPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK 79 (220)
T ss_pred CEEECCCCCCCCCHHHCCCC-CCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 98937757557884446998-10329999539999999999839968999501461132334315665784388721466
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf 56520489999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r 80 QSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE 159 (268)
Q Consensus 80 ~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~ 159 (268)
.-|| +.++..+....+.++ +.+.||. +....+..+++.+.+...++..++.+...+..+ . ++...+
T Consensus 80 ~lGt---~gal~~~~~~~~~~~-iv~~gD~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g-v~~~~~-- 145 (220)
T cd06426 80 PLGT---AGALSLLPEKPTDPF-LVMNGDI--LTNLNYEHLLDFHKENNADATVCVREYEVQVPY-----G-VVETEG-- 145 (220)
T ss_pred CCCH---HHHHHHHHHCCCCCE-EEECCCE--ECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCC-----C-EEEECC--
T ss_conf 5557---899986676189978-9977773--047599999999997499669999862568777-----6-599348--
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHH
Q ss_conf 42001111035777531112235201355200233333207998211120844798997896266998458888768999
Q gi|254780765|r 160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTN 239 (268)
Q Consensus 160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~ 239 (268)
+++..|...|. ...+-..|+|.|++++++...+-. ..+..+- ..++++.|.++.++..++..++|+||+
T Consensus 146 ---~~v~~~~ekp~----~~~~~~~Giy~~~~~~~~~i~~~~--~~~~~d~--~~~li~~g~~v~~~~~~~~W~DiGt~e 214 (220)
T cd06426 146 ---GRITSIEEKPT----HSFLVNAGIYVLEPEVLDLIPKNE--FFDMPDL--IEKLIKEGKKVGVFPIHEYWLDIGRPE 214 (220)
T ss_pred ---CCEEEEEECCC----CCCCCCEEEEEECHHHHHHCCCCC--CCCCCHH--HHHHHHCCCCEEEEEECCEEEECCCHH
T ss_conf ---83767776688----865233169998999997468999--4454589--999998799889997499999698989
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780765|r 240 DLEKVR 245 (268)
Q Consensus 240 Dl~~v~ 245 (268)
||.+|.
T Consensus 215 ~l~~AN 220 (220)
T cd06426 215 DYEKAN 220 (220)
T ss_pred HHHHHC
T ss_conf 999749
No 20
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.71 E-value=3.2e-16 Score=121.52 Aligned_cols=209 Identities=19% Similarity=0.231 Sum_probs=133.6
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCCC---CCCCCCCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--3000100012---22222222234
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQA---GFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~~---g~~~i~t~~~~ 79 (268)
|||+|-+..||| | |||.+|+|+|||+|+++.+..+++++++++|.. +.|.++..+. +.......++-
T Consensus 1 AvIlAaG~GtRl~p~T~~~P-KpLl~i~gkpli~~~l~~l~~~gi~~iii~~~~~~~~i~~~~~~~~~~~~~i~~~~e~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLP-KPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE 79 (223)
T ss_pred CEEECCCCCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 98947878867881107998-31128999989999999999759977887301023433443310234577614788642
Q ss_pred CCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 5652-048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 80 QSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 80 ~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
..|| ..+..|.+.+. .+-++.+.||.-+ ...+.++++.+.+.+.+++.++.+..++..+. .+.++.++
T Consensus 80 ~lGt~gal~~a~~~i~----~~~flv~~gD~~~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g-----~v~~d~~~ 148 (223)
T cd06915 80 PLGTGGAIKNALPKLP----EDQFLVLNGDTYF--DVDLLALLAALRASGADATMALRRVPDASRYG-----NVTVDGDG 148 (223)
T ss_pred ECCHHHHHHHHHHHCC----CCCEEEECCCEEE--CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCC-----CEEECCCC
T ss_conf 3646889988886369----9988998277112--67789999999857997899999899830278-----58987973
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCCEEEEEEECCCCCCCCC
Q ss_conf 442001111035777531112235201355200233333207998211120844798-9978962669984588887689
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARMRIDVKIVQSNAMSVDT 237 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~~I~~~~~~~~~~~IDt 237 (268)
+..-|.-.+ .....-+-..|+|.|+++.|..+.....+. . -|.++ +++.| ++.++..++..++|+|
T Consensus 149 -----~i~~~~eK~--~~~~~~~i~~Giyi~~~~i~~~~~~~~~~~---~--~d~~~~li~~~-~v~~~~~~g~w~DiGt 215 (223)
T cd06915 149 -----RVIAFVEKG--PGAAPGLINGGVYLLRKEILAEIPADAFSL---E--ADVLPALVKRG-RLYGFEVDGYFIDIGI 215 (223)
T ss_pred -----CEEEEEECC--CCCCCCEEEEEEEEECHHHHHHHHCCCCCC---H--HHHHHHHHHCC-CEEEEEECCEEEECCC
T ss_conf -----142347548--987668244638999899997414259972---7--99999998349-9799997991997989
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780765|r 238 TNDLEKVR 245 (268)
Q Consensus 238 ~~Dl~~v~ 245 (268)
||||.+|+
T Consensus 216 ~e~~~~A~ 223 (223)
T cd06915 216 PEDYARAQ 223 (223)
T ss_pred HHHHHHHC
T ss_conf 89999739
No 21
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.70 E-value=4.7e-16 Score=120.47 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=135.9
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CHHHHC---CCCCCCCCCCCCC
Q ss_conf 998177678889-------885000006722668999999967998699986833---000100---0122222222223
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT---KINEIV---LQAGFESVMTHTS 78 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~---~I~~~~---~~~g~~~i~t~~~ 78 (268)
+||+|-+..||| | |||.+|+|+|||+|+++++..+++++++|+|..+ .+.++. +.+|.++....++
T Consensus 3 avILAgG~GtRL~PlT~~~P-KpLlpi~~kPli~~~l~~l~~~Gi~~i~iv~~~~~~~~~~~~~~~~~~~~~~i~y~~e~ 81 (240)
T cd02538 3 GIILAGGSGTRLYPLTKVVS-KQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQP 81 (240)
T ss_pred EEEECCCCCCCCCCCCCCCC-CCCCEECCEEEHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 99988878667873237987-43277999971899999999859962310023426999999974476375279999986
Q ss_pred CCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf 4565204899997422334-521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r 79 HQSGSDRIFEALNIIDSDK-KSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 79 ~~~GTdRi~ea~~~l~~~~-~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~ 157 (268)
-..||. .|+....... +.+++| +.||.-+ ....+..+++.+.....+...++.+..++..+- + +.++.+
T Consensus 82 ~~~Gt~---~al~~a~~~~~~~~~~v-~~gD~i~-~~~~~~~~l~~~~~~~~~~ti~~~~v~~~~~yG---v--v~~d~~ 151 (240)
T cd02538 82 KPGGLA---QAFIIGEEFIGDDPVCL-ILGDNIF-YGQGLSPILQRAAAQKEGATVFGYEVNDPERYG---V--VEFDEN 151 (240)
T ss_pred CCCCCC---HHHHHHHHHCCCCCEEE-ECCCCEE-CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCC---C--CCCCCC
T ss_conf 268631---37888887628987344-4387401-065689999999966688478777723611367---2--311478
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCC-EEEEEEECCCCCCC
Q ss_conf 4442001111035777531112235201355200233333207998211120844798-997896-26699845888876
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARM-RIDVKIVQSNAMSV 235 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~-~I~~~~~~~~~~~I 235 (268)
+++..|.-. |......+--.|+|.|+++.+..+..++++.....|-.+.++ +++.|. .+..+..++..++|
T Consensus 152 -----~~v~~~~EK--P~~~~s~~~~~GiYi~~~~i~~~i~~~~~~~~ge~~i~d~~~~~i~~g~~~~~~~~~~~~W~Di 224 (240)
T cd02538 152 -----GRVLSIEEK--PKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDT 224 (240)
T ss_pred -----CCEEEEEEC--CCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf -----857898889--9999988799999998989999998589999990758899999998599739996899808979
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 899999999999730
Q gi|254780765|r 236 DTTNDLEKVRTLIPH 250 (268)
Q Consensus 236 Dt~~Dl~~v~~il~~ 250 (268)
.||+|+.+|.++++.
T Consensus 225 Gtpe~~~~An~~i~~ 239 (240)
T cd02538 225 GTHESLLEASNFVQT 239 (240)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 999999999988964
No 22
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.68 E-value=2.7e-15 Score=115.69 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=131.3
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCC----------------
Q ss_conf 998177678889-------88500000672266899999996799869998683--30001000----------------
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVL---------------- 66 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~---------------- 66 (268)
|+|+|-+..||| | |||.+|+|+|||+|+++.+..+++++|+|+|.. +.|.++..
T Consensus 3 AvILAgG~GTRL~PlT~~~P-KpLlpi~gkPii~~~i~~l~~~Gi~~iii~~~~~~~~I~~~f~~~~~~~~~l~~~~k~~ 81 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIP-KEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTD 81 (267)
T ss_pred EEEECCCCCCCCCHHHCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCHH
T ss_conf 99989877466784246998-43648999986999999999869988999912466662445066588999985268565
Q ss_pred --------CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf --------122222222223456520489999742233452100001522101000-00122333210134432111111
Q gi|254780765|r 67 --------QAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEP-EILASVLLPLQNPIVDIGTLGTR 137 (268)
Q Consensus 67 --------~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~-~~Id~~i~~~~~~~~dv~tl~~~ 137 (268)
..++++-...++...|| +.|+.........+-++.+.||..+... ..+..+++.+.....++.. +..
T Consensus 82 ~~~~~~~~~~~~~i~~~~e~~~lGt---ggai~~a~~~~~~~~flv~~gD~l~~~~~~~l~~li~~~~~~~~~~~~-~~~ 157 (267)
T cd02541 82 LLEEVRIISDLANIHYVRQKEPLGL---GHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIA-VEE 157 (267)
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCH---HHHHHHCCCCCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHCCEEEE-EEE
T ss_conf 5555422478955999977898876---789872101049986799968988853750668999999730872689-999
Q ss_pred CCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-H
Q ss_conf 220110037544314651454442001111035777531112235201355200233333207998211120844798-9
Q gi|254780765|r 138 IHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-A 216 (268)
Q Consensus 138 ~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~ 216 (268)
.. +.+...--++. ++... +...++..|...|.+......+-..|+|.|+++++......+++..-..+-.+.++ +
T Consensus 158 v~-~~~~~~yGvv~--~~~~~-~~~~~i~~~~EKP~~~~~~s~l~~~GiYi~~~~i~~~i~~~~~~~~~e~~l~d~i~~l 233 (267)
T cd02541 158 VP-PEDVSKYGIVK--GEKID-GDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKL 233 (267)
T ss_pred EC-CCCCCCCCEEE--ECCCC-CCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 68-66787364389--66778-7068888764068876798531663449988999878972899999833077999999
Q ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 978962669984588887689999999999973
Q gi|254780765|r 217 LEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIP 249 (268)
Q Consensus 217 leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~ 249 (268)
++.| ++..+..++...+|-||+|+..|..-+.
T Consensus 234 i~~~-~v~~~~~~g~W~DiGtp~~y~~A~~~~~ 265 (267)
T cd02541 234 LEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHCC-CEEEEEECCEEEECCCHHHHHHHHHHHH
T ss_conf 8579-9699985988895799899999999986
No 23
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.67 E-value=1.8e-15 Score=116.87 Aligned_cols=214 Identities=15% Similarity=0.196 Sum_probs=132.7
Q ss_pred CCCCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCCCCCCCCCCCC
Q ss_conf 55656999817767888988---50000067226689999999679-986999868330---001000122222222223
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQAGFESVMTHTS 78 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~g~~~i~t~~~ 78 (268)
||.++.+||+|-+.|+||-+ |.+.+++|+|++.|++++...+. +++|+|+...+. ..+.+.++.-.+.+
T Consensus 1 ~m~~i~aIIlAaG~G~R~g~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~IvvV~~~~~~~~~~~~~~~~~~~i~~---- 76 (228)
T PRK00155 1 MMPMVYAIIPAAGIGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPAIDEIIVVVPPDDTEYAKLLLAKFDKRIKV---- 76 (228)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE----
T ss_conf 9875799993772051378679965566895699999999997599989799995762699999998744985799----
Q ss_pred CCCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH-HCCCCCCCEEEE
Q ss_conf 4565204---899997422334521000015221010000012233321013443211111122011-003754431465
Q gi|254780765|r 79 HQSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST-DPDDPNIVKIVV 154 (268)
Q Consensus 79 ~~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~-~~~d~n~vKvi~ 154 (268)
..-|.+| ++.+++.+. ..++|+.=-|--||++++.|+++++..++ .+.+.++.|..+.- ..++.+.+.-..
T Consensus 77 v~GG~tR~~Sv~ngL~~l~---~~~~VlIHDaARP~is~~~i~~li~~~~~--~~~~ip~~p~~DTik~~~~~~~i~~tl 151 (228)
T PRK00155 77 VAGGAERQDSVLNGLQALP---DDDWVLVHDAARPFLTPDDIDRLIEAAEE--YGAAILAVPVRDTIKRVDAGGFIVDTP 151 (228)
T ss_pred ECCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCCCEEEECCCCCEEEEC
T ss_conf 7697039999999999840---39979997066768999999999999984--698469876024178965898155303
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 145444200111103577753111223520135520023333-3207998211120844798997896266998458888
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAM 233 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~ 233 (268)
.| ..+|..-.--+|+.+.|.+ |........+...+.+. +...|++++.+.-+...+
T Consensus 152 --------------~R-------~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl--~~~~g~~v~~v~G~~~N~ 208 (228)
T PRK00155 152 --------------DR-------SGLWAAQTPQGFRVELLKEALARALAEGFTITDDASA--VEWLGKPVRLVEGRYDNI 208 (228)
T ss_pred --------------CC-------HHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCCC
T ss_conf --------------51-------4436652885325999999999998759987789999--998699769996685437
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 768999999999997307
Q gi|254780765|r 234 SVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 234 ~IDt~~Dl~~v~~il~~~ 251 (268)
-|-||+||+.+|.+|++.
T Consensus 209 KIT~~eDL~~ae~ll~~r 226 (228)
T PRK00155 209 KVTTPEDLALAEAILKRR 226 (228)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 728999999999999853
No 24
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.66 E-value=2.1e-15 Score=116.36 Aligned_cols=212 Identities=19% Similarity=0.240 Sum_probs=116.2
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-CCCCCCCCCCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--300010001-22222222223456
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-AGFESVMTHTSHQS 81 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~g~~~i~t~~~~~~ 81 (268)
|||+|-+..||| | |||++|+|+|||+|+++.++.+++++|+|+|+. +.|.++..+ .+++++...+.-..
T Consensus 1 AiILAaG~GtRl~plT~~~P-K~L~~i~gkpli~~~i~~l~~~gi~~i~iv~gy~~e~i~~~~~~~~~i~~i~n~~~~~~ 79 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRP-KCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET 79 (229)
T ss_pred CEEECCCCCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 98936877656886457988-03217998799999999999849985366555489999999853136540340002367
Q ss_pred CCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC
Q ss_conf 520-4899997422334521000015221010000012233321013443211111122011003754431465145444
Q gi|254780765|r 82 GSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSEN 160 (268)
Q Consensus 82 GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~ 160 (268)
||. .++.|...++ .+ ++.+.||. +++++.++.+.+ ...+.+.++....... . ...+.+..+..
T Consensus 80 g~~~sl~~a~~~~~----~~-~lv~~gD~-i~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~--- 143 (229)
T cd02523 80 NNIYSLYLARDFLD----ED-FLLLEGDV-VFDPSILERLLS----SPADNAILVDKKTKEW-E--DEYVKDLDDAG--- 143 (229)
T ss_pred CHHHHHHHHHHHCC----CC-EEEEECCE-ECCHHHHHHHHH----CCCCCEEEEEECCCCC-C--CCEEEEECCCC---
T ss_conf 82999998887558----98-59995776-546679999984----7788879999564577-8--74479942687---
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH----HCCCCCCCHHHCCHHHHH-HHHCCCEEEEEEECC-CCCC
Q ss_conf 2001111035777531112235201355200233333----207998211120844798-997896266998458-8887
Q gi|254780765|r 161 GCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRF----TQLSPSVLEQRESLEQLR-ALEARMRIDVKIVQS-NAMS 234 (268)
Q Consensus 161 ~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~----~~l~~t~lE~~E~lEqLR-~leng~~I~~~~~~~-~~~~ 234 (268)
....+-..+. .........+|+|.|+++.+..+ ..+.+++....+--+.+. +++.| ++.+..+.. ..++
T Consensus 144 ---~~~~~~~~~~-~~~~~~~~~~Gi~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~i~~li~~~-~~~~~~~~~~~W~d 218 (229)
T cd02523 144 ---VLLGIISKAK-NLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEE-GVKVKDISDGFWYE 218 (229)
T ss_pred ---CEEEEEECCC-CCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCEEEE
T ss_conf ---0899986899-988746289999999899999999999972867778723999999998079-96699848931996
Q ss_pred CCCHHHHHHHH
Q ss_conf 68999999999
Q gi|254780765|r 235 VDTTNDLEKVR 245 (268)
Q Consensus 235 IDt~~Dl~~v~ 245 (268)
||||+||++|+
T Consensus 219 Igt~edl~~Ae 229 (229)
T cd02523 219 IDDLEDLERAE 229 (229)
T ss_pred CCCHHHHHHHC
T ss_conf 96999999649
No 25
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.64 E-value=5.4e-15 Score=113.86 Aligned_cols=210 Identities=17% Similarity=0.232 Sum_probs=132.3
Q ss_pred EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 6999817767888988---50000067226689999999679-986999868330---0010001222222222234565
Q gi|254780765|r 10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQAGFESVMTHTSHQSG 82 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~g~~~i~t~~~~~~G 82 (268)
|++||+|-+.|+||-. |.+.+++|+|++.|++++..... +++|+|++..+. ..+.....++.++ .-|
T Consensus 1 V~aIIlAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~i~~v------~GG 74 (221)
T pfam01128 1 VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGDPSIQLV------AGG 74 (221)
T ss_pred CEEEEECCEECCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEE------CCC
T ss_conf 98999358106126958986536689888999999999638888979999677889999986079987996------799
Q ss_pred CHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf 204---89999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r 83 SDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE 159 (268)
Q Consensus 83 TdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~ 159 (268)
.+| ++.+++.+.. +.++|+.-.|.-||++++.|++++....+ .++.+.++.|..+. +|.+- .+..
T Consensus 75 ~tR~~SV~ngL~~l~~--~~~~VlIHDaaRP~v~~~~i~~li~~~~~-~~~~~i~~~p~~DT--------ik~v~-~~~~ 142 (221)
T pfam01128 75 DTRQDSVLNGLKALAG--TAKFVLVHDGARPCLPHADLARLLAALET-GTQGAILALPVTDT--------IKRVE-ADGV 142 (221)
T ss_pred CCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCC--------EEEEC-CCCC
T ss_conf 6389999999998358--99989998365667999999999999860-04861354124664--------35753-7860
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC-CCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf 4200111103577753111223520135520023333320-799821112084479899789626699845888876899
Q gi|254780765|r 160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQ-LSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTT 238 (268)
Q Consensus 160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~-l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~ 238 (268)
... ...| ..+|..-.--+|+.+.|.+-.+ ......+...+.+.+ ...|+++..+.-+...+-|.||
T Consensus 143 --i~~--t~dR-------~~l~~~QTPQ~F~~~~L~~a~~~~~~~~~~~TDd~sl~--~~~g~~v~~v~G~~~N~KIT~~ 209 (221)
T pfam01128 143 --VAG--TPDR-------SGLWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLV--EHAGGSVQVVPGRPDNLKITTP 209 (221)
T ss_pred --EEC--CCCC-------HHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH--HHCCCCEEEEECCCCCCCCCCH
T ss_conf --440--3564-------21011007620069999999998886299976299999--9779977999658423887899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999730
Q gi|254780765|r 239 NDLEKVRTLIPH 250 (268)
Q Consensus 239 ~Dl~~v~~il~~ 250 (268)
+||+.+|.+|+.
T Consensus 210 eDl~~ae~lL~k 221 (221)
T pfam01128 210 EDLALAEAILRR 221 (221)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999676
No 26
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.62 E-value=5.9e-14 Score=107.39 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=142.9
Q ss_pred CCCEEEEEECCCCCCCC-C-----CCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCC---CCC-----
Q ss_conf 56569998177678889-8-----8500000672-2668999999967998699986833--0001000---122-----
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-P-----KKILADINGL-PMILHTAIRARKANIGRVIVAVDDT--KINEIVL---QAG----- 69 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-p-----~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~---~~g----- 69 (268)
+++..|+|.|-+..||| | -|||.+++|+ |||.|++..+..+++++|+|+|... .|.++.. .|+
T Consensus 1 ~~~MkAvILAgG~GtRlrPLT~~rPK~llPv~gk~~lId~~L~~~~~~gI~~v~v~~~~~~~~i~~h~g~g~~w~l~~~~ 80 (381)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIYTVGVLTQYQPLELNNHIGIGSPWDLDRKN 80 (381)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 98509999788887672544589742033778915128999999998699999998689979999987176503643444
Q ss_pred --CCCC--CCCCC---CCCCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC--C
Q ss_conf --2222--22223---456520-489999742233452100001522101000001223332101344321111112--2
Q gi|254780765|r 70 --FESV--MTHTS---HQSGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRI--H 139 (268)
Q Consensus 70 --~~~i--~t~~~---~~~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~--~ 139 (268)
+.++ .+.+. ...||. .+..+...++. .+.++++.+.||. +...++..+++.++.+.+++..++... .
T Consensus 81 ~g~~il~~~~~~~~~~~~~Gta~al~~~~~~i~~-~~~e~vlv~~GD~--i~~~dl~~ll~~H~~~~ad~Ti~~~~v~~~ 157 (381)
T PRK05293 81 GGVTILPPYSESSGGKWYKGTAHAIYQNIEYIDQ-YDPEYVLILSGDH--IYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (381)
T ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCCE--EECCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 8779834300146776667428999999998644-8999899976998--867899999999986466650378980512
Q ss_pred CHHHCCCCCCCEEE-EECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCH--HHH-H
Q ss_conf 01100375443146-5145444200111103577753111223520135520023333320799821112084--479-8
Q gi|254780765|r 140 GSTDPDDPNIVKIV-VASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESL--EQL-R 215 (268)
Q Consensus 140 ~~~~~~d~n~vKvi-~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~l--EqL-R 215 (268)
++..+ -++ ++.+ +++..|--. |.......-..|+|+|+++.|+++...........+.. |.+ +
T Consensus 158 ~~~~y------Gvv~~d~~-----g~I~~~~EK--p~~~~s~l~n~GiYif~~~~L~~~l~~~~~~~~~~~~~~~d~i~~ 224 (381)
T PRK05293 158 EASRF------GIMNTDEE-----MRIVEFEEK--PKFPKSNLASMGIYIFNWKRLKEYLEEDEKNPNSSHDFGKDVIPL 224 (381)
T ss_pred CCCCC------EEEEECCC-----CCEEEEEEC--CCCCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 64416------08998799-----979999978--899876654331699569999999987513886334668999999
Q ss_pred HHHCCCEEEEEEECCCCCCCCCHHHHHHHH-HHHHCCHH
Q ss_conf 997896266998458888768999999999-99730724
Q gi|254780765|r 216 ALEARMRIDVKIVQSNAMSVDTTNDLEKVR-TLIPHDHH 253 (268)
Q Consensus 216 ~leng~~I~~~~~~~~~~~IDt~~Dl~~v~-~il~~~~~ 253 (268)
+++.|.++..+..++....|.|++|+-.+. .+|...+.
T Consensus 225 ll~~~~~v~~y~~~g~w~dig~~~~~~~an~~lL~~~~~ 263 (381)
T PRK05293 225 YLEEGEKLYAYPFEGYWKDVGTIESLWEANMELLRPENP 263 (381)
T ss_pred HHHCCCCEEEEEECCEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 997799689998558688889889999999998666764
No 27
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.62 E-value=1.5e-14 Score=111.17 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=116.2
Q ss_pred EEEECCCCCCCCCC------CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC-----HHHHCCCCCCCC-CCCCCCC
Q ss_conf 99817767888988------50000067226689999999679986999868330-----001000122222-2222234
Q gi|254780765|r 12 VIIPARLNSMRFPK------KILADINGLPMILHTAIRARKANIGRVIVAVDDTK-----INEIVLQAGFES-VMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rlp~------K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~-----I~~~~~~~g~~~-i~t~~~~ 79 (268)
+||||-+.+|||.. |||++++|+|||+|++++++..+.+++++++..+. +.+........+ +..-+..
T Consensus 1 iVIlaaG~GtRl~~~t~~~PK~Ll~v~gkp~i~~~i~~l~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDGE 80 (231)
T ss_pred CEEECCCCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 98986788736475679988750179995789999999986499246861454666678887775155897189995699
Q ss_pred CCCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 56520-48999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 80 QSGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 80 ~~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
..||. .+..|.+.++.+ +-++.+.||. +++ .++.+.+..+..++.+.+.++....++. ... +..+.++
T Consensus 81 ~~G~a~av~~a~~~i~~~---~~~lv~~gD~-~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~g~--v~~~~~~ 149 (231)
T cd04183 81 TLGAACTVLLAADLIDND---DPLLIFNCDQ-IVE-SDLLAFLAAFRERDLDGGVLTFFSSHPR----WSY--VKLDENG 149 (231)
T ss_pred CCCHHHHHHHHHHHCCCC---CEEEEEECCC-CCC-CCHHHHHHHHHHCCCCEEEEEEEECCCC----CCC--EEECCCC
T ss_conf 996799999999864899---8099970761-136-3889999999856998799999912577----763--5784798
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHH--HHHHHHCC---CC---CCCHHHCCHHHHHHHHCCCEEEEEEECC
Q ss_conf 4420011110357775311122352013552002--33333207---99---8211120844798997896266998458
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRRE--ALKRFTQL---SP---SVLEQRESLEQLRALEARMRIDVKIVQS 230 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~--~L~~~~~l---~~---t~lE~~E~lEqLR~leng~~I~~~~~~~ 230 (268)
++.-+.-.+.+ .-+-..|+|+|+.. +++.+..+ .. .+.+...-+. .++++|.+|..+.++.
T Consensus 150 -----~v~~i~EK~~~----s~~~~~GiY~F~~~~~f~~~~~~~~~~~~~~~gE~yltd~i~--~li~~g~kv~~~~i~~ 218 (231)
T cd04183 150 -----RVIETAEKEPI----SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYN--ELILDGKKVGIYLIDK 218 (231)
T ss_pred -----CEEECCCCCCC----CHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEHHHHHH--HHHHCCCEEEEEEECC
T ss_conf -----47650235887----500201469974679999999998644865599998589999--9998889189999789
Q ss_pred -CCCCCCCHHHHH
Q ss_conf -888768999999
Q gi|254780765|r 231 -NAMSVDTTNDLE 242 (268)
Q Consensus 231 -~~~~IDt~~Dl~ 242 (268)
..+++.||+||+
T Consensus 219 ~~~~d~GtPedle 231 (231)
T cd04183 219 DDYHSFGTPEDLE 231 (231)
T ss_pred CEEEECCCHHHCC
T ss_conf 9699896969849
No 28
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.9e-14 Score=108.48 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=140.0
Q ss_pred EEEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCC---CCCCCCCCCCC
Q ss_conf 9998177678889-------8850000067226689999999679986999868--3300010001---22222222223
Q gi|254780765|r 11 LVIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQ---AGFESVMTHTS 78 (268)
Q Consensus 11 ~~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~---~g~~~i~t~~~ 78 (268)
-++|.|-+--+|| | |||.+|+|+|||+|+++.....++++++++++ .+.|.++... +|.+.-...+.
T Consensus 3 kavILagG~GtRLrPlT~~~P-KPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~ 81 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRP-KPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK 81 (358)
T ss_pred EEEEECCCCCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 599994665666355448997-4465799864599999999987997899987746899999986263569865997168
Q ss_pred CCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf 45652-04899997422334521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r 79 HQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 79 ~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~ 157 (268)
-..|| .++..|...+.. +-++.+.||.. .+-+ ++.+++.++..........+....+..+ - ++....
T Consensus 82 ~~lGTag~l~~a~~~l~~----~~f~v~~GDv~-~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~---G---vv~~~~ 149 (358)
T COG1208 82 EPLGTAGALKNALDLLGG----DDFLVLNGDVL-TDLD-LSELLEFHKKKGALATIALTRVLDPSEF---G---VVETDD 149 (358)
T ss_pred CCCCCHHHHHHHHHHHCC----CCEEEEECCCC-CCCC-HHHHHHHHHHCCCCCEEEEEECCCCCCC---C---EEEECC
T ss_conf 766648999999886079----97899978862-2468-8999999873566427998752776558---6---399759
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCCEEEEEEECCCCCCCC
Q ss_conf 4442001111035777531112235201355200233333207998211120844798-997896266998458888768
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARMRIDVKIVQSNAMSVD 236 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~~I~~~~~~~~~~~ID 236 (268)
.. +++..|.=.|.+......+---|+|.|+++.+..+....++..+. |.+. .++-|..+..+..+....+|+
T Consensus 150 ~~---~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~----~~~~~l~~~~~~v~~~~~~g~W~dig 222 (358)
T COG1208 150 GD---GRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEE----ELLPALAAKGEDVYGYVFEGYWLDIG 222 (358)
T ss_pred CC---CEEEEEEECCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCCCHH----HHHHHHHHCCCCEEEEEECCEEEECC
T ss_conf 98---489889972667678886699999998978943013357432147----78999987699569997578799699
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
||+|+..+.+.+..
T Consensus 223 ~p~d~~~a~~~~~~ 236 (358)
T COG1208 223 TPEDLLEANELLLR 236 (358)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 98999999999985
No 29
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.61 E-value=3.5e-14 Score=108.76 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=85.1
Q ss_pred EEEECCCCCCCCC-CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHH-HCCCCCCCCCCCCCCCCCCCH-HH
Q ss_conf 9981776788898-8500000672266899999996799869998683--30001-000122222222223456520-48
Q gi|254780765|r 12 VIIPARLNSMRFP-KKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINE-IVLQAGFESVMTHTSHQSGSD-RI 86 (268)
Q Consensus 12 ~iIpAR~~S~Rlp-~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~-~~~~~g~~~i~t~~~~~~GTd-Ri 86 (268)
|||.|-+.|+||- .|.|.+++|+||++|++++++.+.+++++|+|++ +++.+ .+...+..++. .+....|.. -+
T Consensus 2 AIILAaG~S~RmG~~K~Ll~~~g~~ll~~~i~~~~~~~~~~vivv~~~~~~~~~~~~~~~~~~~~v~-n~~~~~G~~~si 80 (188)
T TIGR03310 2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLANHSNITLVH-NPQYAEGQSSSI 80 (188)
T ss_pred EEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCCEEC-CCCCCCCHHHHH
T ss_conf 6998898766598890068889832999999999856999669982783789999862668962654-865567808999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999742233452100001522101000001223332101344321
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~ 132 (268)
..++... .+.+.++.+-||+||++++++..+++.+..+...++
T Consensus 81 ~~gl~~~---~~~~~~li~~~D~P~l~~~~i~~L~~~~~~~~~~iv 123 (188)
T TIGR03310 81 KLGLELP---VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred HHHHHCC---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 9999706---578859997188788999999999999985799617
No 30
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.59 E-value=9.8e-14 Score=105.99 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=128.5
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC---CCCCCC--CC--
Q ss_conf 998177678889-------88500000672266899999996799869998683--300010001---222222--22--
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ---AGFESV--MT-- 75 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~---~g~~~i--~t-- 75 (268)
+||.|-+..||| | |||.+|+|+|+|+|+++.....++++++++++. +.|.++... .+.+.. ..
T Consensus 1 VvILaGG~GtRL~pLT~~~P-KpLvpi~gkPii~~ii~~l~~~gi~~iil~~gy~~~~i~~~f~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKP-KPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEECCCCCCCCCHHHCCCC-CCCEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 98934787554143127998-00318999989999999999869987999532251137999877776158558993377
Q ss_pred -----------------CCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -----------------22345652-048999974223345210000152210100000122333210134432111111
Q gi|254780765|r 76 -----------------HTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTR 137 (268)
Q Consensus 76 -----------------~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~ 137 (268)
.....+|| .++..+...+.. .+.++.+.||. +.+ -++.++++.+..+++.+..++.+
T Consensus 80 ~~~~~~~~~~~~~i~~~~~~~~~~tgg~l~~~~~~l~~---~e~flv~nGD~-l~d-~dl~~l~~~h~~~~~~~tl~~v~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD---DETFMLTYGDG-VSD-VNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC---CCEEEEEECCC-CCC-CCHHHHHHHHHHCCCEEEEEECC
T ss_conf 27983366778605898536655033899999987489---97399991552-343-68799999998669859999658
Q ss_pred CCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH
Q ss_conf 22011003754431465145444200111103577753111223520135520023333320799821112084479899
Q gi|254780765|r 138 IHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL 217 (268)
Q Consensus 138 ~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l 217 (268)
.+..+ .-+.++.+ +++..|.-.|. .. ..+-.-|+|.|+++.+..+.. ..+..|+. + .-+++
T Consensus 155 --~~~~y-----G~v~~d~~-----~~v~~f~EKP~--~~-~~~in~GiYv~~~~if~~i~~-~~~~~e~d--~-~p~li 215 (253)
T cd02524 155 --PPGRF-----GELDLDDD-----GQVTSFTEKPQ--GD-GGWINGGFFVLEPEVFDYIDG-DDTVFERE--P-LERLA 215 (253)
T ss_pred --CCCCC-----CEEEECCC-----CEEEEEEECCC--CC-CCCCEEEEEEECHHHHHHCCC-CCCCHHHH--H-HHHHH
T ss_conf --88888-----67999899-----85999873788--87-774214999988999954667-88742678--9-99999
Q ss_pred HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 78962669984588887689999999999973072
Q gi|254780765|r 218 EARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDH 252 (268)
Q Consensus 218 eng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~ 252 (268)
+.| ++.++..++...+|+||+|++.+++.++..+
T Consensus 216 ~~g-~l~~y~~~g~W~DigT~~d~~~l~~~~~~~~ 249 (253)
T cd02524 216 KDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred HCC-CEEEEECCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf 669-9799966988818999799999999997399
No 31
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.58 E-value=4.2e-14 Score=108.27 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=123.7
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC--CCCCCCCCCC-CC
Q ss_conf 998177678889-------88500000672266899999996799869998683--300010001--2222222222-34
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ--AGFESVMTHT-SH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~--~g~~~i~t~~-~~ 79 (268)
|||+|-+-.||| | |||.+|+|+|||+|+++.+..+++++++|+|.. +.|.++..+ ++.++....+ +.
T Consensus 2 AvIlAgG~GtRl~plT~~~P-Kpllpv~~kpii~~~i~~l~~~gi~~iii~~~y~~~~i~~~~~~~~~~~~i~~~~e~~~ 80 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRP-KPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE 80 (221)
T ss_pred EEEECCCCCCCCCHHHCCCC-HHEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 89988847668874457998-02379999899999999999829967998325327889998722557873799740332
Q ss_pred CCCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 56520-48999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 80 QSGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 80 ~~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
.-||. .+..|.+.+.. +-++.+.||. +.+ ..+..+++.+.....+...++....+++. . ....+..+.+.
T Consensus 81 ~lGT~~ai~~a~~~~~~----d~flv~~gD~-l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~~~~~~ 151 (221)
T cd06422 81 LLETGGGIKKALPLLGD----EPFLVVNGDI-LWD-GDLAPLLLLHAWRMDALLLLLPLVRNPGH-N--GVGDFSLDADG 151 (221)
T ss_pred CCCCCHHHHHHHHHCCC----CCEEEEECCE-EEC-CCHHHHHHHHHHHCCCCEEEEEEECCCCC-C--CCCEEEECCCE
T ss_conf 36650588888863499----8689980675-781-89899999999706897799998678765-5--75379876865
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf 44200111103577753111223520135520023333320799821112084479899789626699845888876899
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTT 238 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~ 238 (268)
+.. .. |......+-..|+|.|+++++..+ ++...+...-+.+ +++.| ++..+..++..++|+||
T Consensus 152 -----~i~---~~--~~~~~~~~~~~G~yif~~~if~~i---~~~~~~~~d~~~~--li~~~-~v~~~~~~g~w~DiGtp 215 (221)
T cd06422 152 -----RLR---RG--GGGAVAPFTFTGIQILSPELFAGI---PPGKFSLNPLWDR--AIAAG-RLFGLVYDGLWFDVGTP 215 (221)
T ss_pred -----EEE---EC--CCCCCCEEEEEEEEEEEHHHHHHC---CCCCCCHHHHHHH--HHHCC-CEEEEECCCEEEECCCH
T ss_conf -----899---77--888774278877999818999547---8887755899999--99669-84999729979949999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780765|r 239 NDLEKV 244 (268)
Q Consensus 239 ~Dl~~v 244 (268)
+||..|
T Consensus 216 e~~~~A 221 (221)
T cd06422 216 ERLLAA 221 (221)
T ss_pred HHHHHC
T ss_conf 999749
No 32
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.57 E-value=4.3e-14 Score=108.23 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=124.0
Q ss_pred CCCCEEEEEECCCCCCCC-CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHC---CCCCCCCCCCCCCCCC
Q ss_conf 556569998177678889-885000006722668999999967998699986833000100---0122222222223456
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRF-PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIV---LQAGFESVMTHTSHQS 81 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rl-p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~---~~~g~~~i~t~~~~~~ 81 (268)
++..+.+||.|-+.|+|| .+|.|.++.|+||+.|+++++....++++||+|+.+...... ...+.. +.+.++...
T Consensus 2 ~~~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~~~~~-~v~npd~~~ 80 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQLGVT-VVVNPDYAQ 80 (199)
T ss_pred CCCCEEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEE-EEECCCHHH
T ss_conf 8864678887166666678751654149982899999999726887099992761136788653369808-996955222
Q ss_pred CCHH-HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC
Q ss_conf 5204-899997422334521000015221010000012233321013443211111122011003754431465145444
Q gi|254780765|r 82 GSDR-IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSEN 160 (268)
Q Consensus 82 GTdR-i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~ 160 (268)
|... +.-++..+..+. +.++..-||+|+++++++++++..+... ..+ +.+.....
T Consensus 81 Gls~Sl~ag~~a~~~~~--~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~~~---v~p~~~g~------------------ 136 (199)
T COG2068 81 GLSTSLKAGLRAADAEG--DGVVLMLGDMPQVTPATVRRLIAAFRAR-GAA---VRPVYGGA------------------ 136 (199)
T ss_pred HHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCHHHHHHHHHHCCCC-CCE---EEEECCCC------------------
T ss_conf 37699999987355679--7699996888878789999999844346-734---42220687------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH--HCCCEEEEEEE-CCCCCCCCC
Q ss_conf 200111103577753111223520135520023333320799821112084479899--78962669984-588887689
Q gi|254780765|r 161 GCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL--EARMRIDVKIV-QSNAMSVDT 237 (268)
Q Consensus 161 ~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l--eng~~I~~~~~-~~~~~~IDt 237 (268)
.++=++|+|..-+ ....+ .+-+=+|.| +-|.....++. .....+|||
T Consensus 137 -rG~Pv~~~~~~~~---------------------~l~~l--------~GD~G~r~ll~~~~~~~~~V~~~~g~llDVDT 186 (199)
T COG2068 137 -RGHPVLLSKDLFP---------------------ALARL--------SGDVGARQLLEEGGLPLVEVEVDAGVLLDVDT 186 (199)
T ss_pred -CCCCEEECHHHHH---------------------HHHHC--------CCCHHHHHHHHHCCCCEEEECCCCCEEECCCC
T ss_conf -6796456566789---------------------98616--------88622899997538634765268851754799
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780765|r 238 TNDLEKVRTLIP 249 (268)
Q Consensus 238 ~~Dl~~v~~il~ 249 (268)
|+|+.++...+.
T Consensus 187 ped~~~a~~~~~ 198 (199)
T COG2068 187 PEDLARAQDLLR 198 (199)
T ss_pred HHHHHHHHHHHC
T ss_conf 899999987624
No 33
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.4e-13 Score=105.01 Aligned_cols=218 Identities=16% Similarity=0.214 Sum_probs=152.6
Q ss_pred EEEECCCCCCCC-C-----CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CHHHHC---CCCCCCCCCCCCCC
Q ss_conf 998177678889-8-----85000006722668999999967998699986833---000100---01222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-P-----KKILADINGLPMILHTAIRARKANIGRVIVAVDDT---KINEIV---LQAGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p-----~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~---~I~~~~---~~~g~~~i~t~~~~ 79 (268)
++|.|-+.-||| | .|.|.++.+||||+|.+++...+++.+|.|+++.+ ++.++. .++|++.-..-|..
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~ 82 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPE 82 (286)
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 27963767544332313677533211686215857999997598569999668850566633367100386369996589
Q ss_pred CCCCHHHHHHHHHHCCCCC-CCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEE-EECC
Q ss_conf 5652048999974223345-2100001522101000001223332101344321111112201100375443146-5145
Q gi|254780765|r 80 QSGSDRIFEALNIIDSDKK-SQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIV-VASP 157 (268)
Q Consensus 80 ~~GTdRi~ea~~~l~~~~~-~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi-~~~~ 157 (268)
..| +++|+-..+.... .++++.| ||.-|-. .+.+.+..|.+...+...+..+..+|..+- |+ ++.+
T Consensus 83 p~G---lA~Av~~a~~fv~~~~f~l~L-GDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfG------V~e~d~~ 150 (286)
T COG1209 83 PDG---LAHAVLIAEDFVGDDDFVLYL-GDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYG------VVEFDED 150 (286)
T ss_pred CCC---HHHHHHHHHHHCCCCCEEEEE-CCCEECC--CHHHHHHHHHCCCCCCEEEEEECCCCCCCE------EEEECCC
T ss_conf 876---899999888645898659992-6844105--779999998524899489999848953044------8998689
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCC---CCHHHCCHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 4442001111035777531112235201355200233333207998---2111208447989978962669984588887
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPS---VLEQRESLEQLRALEARMRIDVKIVQSNAMS 234 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t---~lE~~E~lEqLR~leng~~I~~~~~~~~~~~ 234 (268)
. +++ +=.-.|...+..|--+|+|.|++.+..-..++++| ++|...-++. .|+.|..+.......-..+
T Consensus 151 ~-----~v~--~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~--~i~~G~~~~~~~~~G~WlD 221 (286)
T COG1209 151 G-----KVI--GLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDL--YIEKGYLVVAILIRGWWLD 221 (286)
T ss_pred C-----CEE--EEEECCCCCCCCEEEEEEEEECHHHHHHHHCCCCCCCCCEEEHHHHHH--HHHCCCEEEEEECCCEEEE
T ss_conf 9-----687--767889999876268899970858999987189887785675288999--9976968889871516886
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 6899999999999730
Q gi|254780765|r 235 VDTTNDLEKVRTLIPH 250 (268)
Q Consensus 235 IDt~~Dl~~v~~il~~ 250 (268)
+-|++||..|..++..
T Consensus 222 tGt~~slleA~~~i~~ 237 (286)
T COG1209 222 TGTPESLLEANNFVRT 237 (286)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 3870128999999988
No 34
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.55 E-value=3.5e-13 Score=102.57 Aligned_cols=248 Identities=12% Similarity=0.135 Sum_probs=146.8
Q ss_pred CCCCCE-EEEEECCCCCCCC-CC-----CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHC----------
Q ss_conf 555656-9998177678889-88-----5000006722668999999967998699986833--000100----------
Q gi|254780765|r 5 HIKEKV-LVIIPARLNSMRF-PK-----KILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIV---------- 65 (268)
Q Consensus 5 ~~~~ki-~~iIpAR~~S~Rl-p~-----K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~---------- 65 (268)
.|.+|| =|||||-+..||| |- |+|.+|.++|||+|+++.|..+++++|+++|+.. .|.++-
T Consensus 3 ~m~kki~KaVI~AAG~GTRl~P~Tk~~PKemLPi~dkPii~~~vee~~~aGI~ei~iV~~~~K~~I~d~F~~~~ele~~L 82 (302)
T PRK13389 3 AINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAML 82 (302)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCHHHHHHH
T ss_conf 43577567999898675366865046981215489887599999999986997899992798413556347708888888
Q ss_pred ------------C---CCCCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCCEEEECCCCCCC------CCCCHHHHHHHH
Q ss_conf ------------0---1222222222234565204-89999742233452100001522101------000001223332
Q gi|254780765|r 66 ------------L---QAGFESVMTHTSHQSGSDR-IFEALNIIDSDKKSQIIVNMQADIPN------IEPEILASVLLP 123 (268)
Q Consensus 66 ------------~---~~g~~~i~t~~~~~~GTdR-i~ea~~~l~~~~~~d~vV~lqGD~Pl------i~~~~Id~~i~~ 123 (268)
+ ..++++...+|....|+.. +.-|- .+-. +-.++|.+ ||.-+ +....+..+++.
T Consensus 83 ~~~~k~~~l~~~~~i~~~~~~i~~v~Q~~~~GlGhAV~~A~-~~v~--depF~Vll-gD~li~~~~~~l~~~~l~~li~~ 158 (302)
T PRK13389 83 EKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAH-PVVG--DEPVAVIL-PDVILDEYESDLSQDNLAEMIRR 158 (302)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHH-HHCC--CCCEEEEE-CCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 76325777777653035883599986789876899999889-8629--96579993-63341355665205689999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC---CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC
Q ss_conf 101344321111112201100375443146514544---42001111035777531112235201355200233333207
Q gi|254780765|r 124 LQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE---NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQL 200 (268)
Q Consensus 124 ~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~---~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l 200 (268)
|...... +..+.+..++.. --|+.-.... ....++..+--.|.|......+-.+|.|.|.++......++
T Consensus 159 ~~~~g~~-~I~v~~Ved~s~------YGVv~~~g~~~~~~~~~~I~~iVEKP~~e~aPSnlAi~GrYif~p~IF~~L~~~ 231 (302)
T PRK13389 159 FDETGHS-QIMVEPVADVTA------YGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKT 231 (302)
T ss_pred HHHCCCC-EEEEEECCCCCC------EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHCC
T ss_conf 8614986-899998677632------447963566445676332245674378878987757876788788999999607
Q ss_pred CCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH--HHHHCCHHHHHHHHHHHH
Q ss_conf 998211120844798997896266998458888768999999999--997307245688776345
Q gi|254780765|r 201 SPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVR--TLIPHDHHKGLYKKIFND 263 (268)
Q Consensus 201 ~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~--~il~~~~~~~~~~~~~~~ 263 (268)
+++..-..|-.|.++.+-...++..+..++...++-++.++-++. --|+...+...++..+.+
T Consensus 232 ~p~~~GEiqLTDAi~~l~~~~~v~~~~~~G~r~D~G~~~gyl~A~i~~al~~~~~~~~~~~~l~~ 296 (302)
T PRK13389 232 PPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLEE 296 (302)
T ss_pred CCCCCCCEEHHHHHHHHHHHCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999808499999999842976999965579787680137999999982798788999999999
No 35
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein A; Reviewed
Probab=99.54 E-value=2.4e-13 Score=103.56 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=83.7
Q ss_pred CCCEEEEEECCCCCCCCC--CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCC-
Q ss_conf 565699981776788898--85000006722668999999967998699986833000100012222222222345652-
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFP--KKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGS- 83 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp--~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GT- 83 (268)
|.++.++|.|-+.|+|+- .|.|.+++|+|||+|++++... ..++|+|++..+ .+....+|..++.....-..|-
T Consensus 1 m~~i~gvILAGG~SsRmgG~dK~ll~~~G~~li~~~~~~l~~-~~~~v~i~~~~~--~~~~~~~~~~vi~D~~~~~~GPL 77 (193)
T PRK00317 1 MPPITGVILAGGRARRMGGVDKGLQELNGKPLIQHVIDRLAP-QVDEIVINANRN--LARYAAFGLPVIPDELADFPGPL 77 (193)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHH-HCCEEEEECCCC--HHHHHHCCCEEEECCCCCCCCCH
T ss_conf 998569998876767899999750658997499999998775-457689976878--88886449969963787766758
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 0489999742233452100001522101000001223332101344321
Q gi|254780765|r 84 DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 84 dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~ 132 (268)
..++.++... +.+.++.+-||+||++++.+..+++.+.....+++
T Consensus 78 ~Gi~saL~~~----~~~~vlv~~~DmP~i~~~~i~~L~~~~~~~~~~iv 122 (193)
T PRK00317 78 AGILAGLQQA----ETEWVLFVPCDTPFLPRDLVARLAQALIEEDADIA 122 (193)
T ss_pred HHHHHHHHHC----CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9999998626----87759996267788989999999999874799838
No 36
>PRK10122 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; Provisional
Probab=99.54 E-value=1e-12 Score=99.67 Aligned_cols=246 Identities=12% Similarity=0.156 Sum_probs=140.9
Q ss_pred CCCEEEEEECCCCCCCC-CC-----CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCC------------
Q ss_conf 56569998177678889-88-----5000006722668999999967998699986833--0001000------------
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-PK-----KILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIVL------------ 66 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-p~-----K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~------------ 66 (268)
|++-=|||||.+-.||| |- |+|.+|.++|+|+|+++.|..+++++|+++|+.. .|.++-.
T Consensus 1 ~~~MKaVI~aAG~GTRl~P~Tk~~PKemLPv~dkPii~~~vee~~~aGI~eiiiV~~~~k~~ie~~F~~~~~le~~l~~~ 80 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 99754999898676356853157892446289853699999999987997899991797115777466718889998761
Q ss_pred ----------C---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCC------CHHHHHHHHHCC
Q ss_conf ----------1---222222222234565204899997422334-52100001522101000------001223332101
Q gi|254780765|r 67 ----------Q---AGFESVMTHTSHQSGSDRIFEALNIIDSDK-KSQIIVNMQADIPNIEP------EILASVLLPLQN 126 (268)
Q Consensus 67 ----------~---~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~-~~d~vV~lqGD~Pli~~------~~Id~~i~~~~~ 126 (268)
. .|+++....+....||. +|+....... +..++|.+ ||.-+.+. ..+..++..+.+
T Consensus 81 ~k~~~l~~~~~~~~~gv~i~yv~Q~eplGlG---hAV~~A~~~v~depF~Vll-gD~l~~~~~~~~~~~~l~~~i~~~~~ 156 (297)
T PRK10122 81 VKRQLLAEVQSICPPGVTIMNVRQGQPLGLG---HSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHH---HHHHHHHHHCCCCEEEEEC-CCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 1799999887524489649998779998678---9999888734996079972-66142278641678889999999971
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCH---HHHHCCCCC-CCCCCCCCCCCEEEEEEEHHHHHHHHCCCC
Q ss_conf 3443211111122011003754431465145444200---111103577-753111223520135520023333320799
Q gi|254780765|r 127 PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCF---RALYFTRTK-TPHGTGPFYQHLGIYAYRREALKRFTQLSP 202 (268)
Q Consensus 127 ~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~---~alyfsR~~-ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~ 202 (268)
....++ ++... +.+.... -|+.....-+..+ ++..+--.| .|..-...+--+|+|.|.++......++++
T Consensus 157 ~~~~~v-~~~~v--~~d~~~y---GVv~~~~~~d~~g~v~~I~~ivEKP~~P~~apSnlai~GrYi~~p~IF~~L~~~~p 230 (297)
T PRK10122 157 TGRSQV-LAKRM--PGDLSEY---SVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTQP 230 (297)
T ss_pred CCCCEE-EEEEE--CCCCCCE---EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHCCC
T ss_conf 499599-99995--7876515---79955655466775333565146778986677773377899728799999970899
Q ss_pred CCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH--HHHHCCHHHHHHHHHHH
Q ss_conf 8211120844798997896266998458888768999999999--99730724568877634
Q gi|254780765|r 203 SVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVR--TLIPHDHHKGLYKKIFN 262 (268)
Q Consensus 203 t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~--~il~~~~~~~~~~~~~~ 262 (268)
+..-..|-.|.+..+-...++..+..++...++-+|.++-++. --|+...+...+++.+.
T Consensus 231 ~~~GEiqLTDAi~~l~~~~~v~~~~~~G~~~D~G~~~g~l~A~i~~al~~~~~~~~~~~~l~ 292 (297)
T PRK10122 231 GAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIE 292 (297)
T ss_pred CCCCEEEHHHHHHHHHCCCCEEEEEECCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99985889999999970198799995517975798626999999999679878899999999
No 37
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.53 E-value=3.8e-13 Score=102.29 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=87.4
Q ss_pred EEEEEECCCCCCCC-CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHH----HHCCCCCCCCCCCCCCCCCC
Q ss_conf 69998177678889-885000006722668999999967998699986833--000----10001222222222234565
Q gi|254780765|r 10 VLVIIPARLNSMRF-PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT--KIN----EIVLQAGFESVMTHTSHQSG 82 (268)
Q Consensus 10 i~~iIpAR~~S~Rl-p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~----~~~~~~g~~~i~t~~~~~~G 82 (268)
|.+||.|-+.|+|| .+|.|.+++|+||+.|+++.+..+++++++|+|+.+ ++. +.....++.++. .++...|
T Consensus 1 I~aiILAAG~S~RmG~~KlLl~~~g~~ll~~~~~~~~~~~~~~vvVV~g~~~~~~~~~~~~~~~~~~~~~v~-n~~~~~G 79 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVC-CRDACEG 79 (190)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCC
T ss_conf 979997998766899884238509911999999999866998199981871888876678763348749996-8986546
Q ss_pred CH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 20-4899997422334521000015221010000012233321013443
Q gi|254780765|r 83 SD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVD 130 (268)
Q Consensus 83 Td-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~d 130 (268)
.. -+.-+++.+.. ...+-++.+-||+|+++++++..+++.+......
T Consensus 80 ~~sSi~~Gl~~~~~-~~~d~~li~l~D~P~l~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 80 QAHSLKCGLRKAEA-MGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 07999999997436-6889699964897788999999999999858990
No 38
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.53 E-value=3e-13 Score=102.95 Aligned_cols=117 Identities=18% Similarity=0.295 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEEECCCCCCCC-CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC-CHHHHCCCCCCCCCCCCCCCC
Q ss_conf 775556569998177678889-885000006722668999999967998699986833-000100012222222222345
Q gi|254780765|r 3 DQHIKEKVLVIIPARLNSMRF-PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT-KINEIVLQAGFESVMTHTSHQ 80 (268)
Q Consensus 3 ~~~~~~ki~~iIpAR~~S~Rl-p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~-~I~~~~~~~g~~~i~t~~~~~ 80 (268)
.+.|++++.++|.|=+.|+|+ -.|.|.+++|+||++|+++.+... .++|+|++.+. +...+. ..++.++.-... .
T Consensus 1 ~~~m~~~i~~vILAGG~S~RMG~dK~ll~~~G~~ll~~~~~~l~~~-~~~v~i~~~~~~~~~~~~-~~~~~~i~D~~~-~ 77 (200)
T PRK02726 1 SKTMKNNLVALILAGGKSSRMGQDKALITWQGVPLLQRVCRIAAAC-ADEVYIITPWPERYQSLL-PPGCHWLREPPP-S 77 (200)
T ss_pred CCCCCCCCEEEEECCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHH-CCEEEEECCCHHHHHHHC-CCCCEEEECCCC-C
T ss_conf 9755577179998576540279984338789875999999998741-886999679978877525-888579016998-8
Q ss_pred CCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 652-0489999742233452100001522101000001223332101
Q gi|254780765|r 81 SGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 81 ~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
.|- .-++.|+..+. .+.++.+-+|+||++++.+.+++..+..
T Consensus 78 ~GPL~Gi~saL~~~~----~~~~lv~~cD~P~l~~~~i~~l~~~l~~ 120 (200)
T PRK02726 78 GGPLVAFAQGLPQIK----TEWVLLLACDLPKLRVGVLQEWLQQLDN 120 (200)
T ss_pred CCCHHHHHHHHHHCC----CCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 985999999998568----8838994388788899999999999860
No 39
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.52 E-value=6.2e-13 Score=100.99 Aligned_cols=222 Identities=15% Similarity=0.145 Sum_probs=134.7
Q ss_pred EEEECCC--CCCCC-------CCCEECCCCCCCHHHHHHHHHHH-CCCCEEEEECC--CCCHHHHCC----CCCCCCCCC
Q ss_conf 9981776--78889-------88500000672266899999996-79986999868--330001000----122222222
Q gi|254780765|r 12 VIIPARL--NSMRF-------PKKILADINGLPMILHTAIRARK-ANIGRVIVAVD--DTKINEIVL----QAGFESVMT 75 (268)
Q Consensus 12 ~iIpAR~--~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~-s~~~~viVaTd--d~~I~~~~~----~~g~~~i~t 75 (268)
|||.|-+ .-||| | |||.+|+|+|||+|+++.+.. +++++|+++|. ++.+.++.. ..++++-..
T Consensus 1 AvILaGG~~~GTRL~plT~~~P-Kpllpv~gkPiI~~~i~~l~~~~gi~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVP-KPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYL 79 (257)
T ss_pred CEEECCCCCCCCCCCHHHCCCC-CCCCEECCEEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9897889999731674337998-442579999541999999997479848999805757999998742343369605998
Q ss_pred CCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 22345652-04899997422334521000015221010000012233321013443211111122011003754431465
Q gi|254780765|r 76 HTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVV 154 (268)
Q Consensus 76 ~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~ 154 (268)
.+.-.-|| +.+..+...+..+ ..+.++.+.||. +..-.+..+++.+.+++++++.++.+... ++...- .-++.
T Consensus 80 ~e~~~lGtagal~~~~~~i~~~-~~~~~lv~~gD~--l~~~dl~~l~~~h~~~~~~~ti~~~~v~~-~~~s~f--Gvvv~ 153 (257)
T cd06428 80 QEYKPLGTAGGLYHFRDQILAG-NPSAFFVLNADV--CCDFPLQELLEFHKKHGASGTILGTEASR-EQASNY--GCIVE 153 (257)
T ss_pred ECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCC--CCCCCHHHHHHHHHHCCCCEEEEEEECCC-CCCCCE--EEEEE
T ss_conf 6476667367899999997348-997699988850--03878999999999779986999998782-136540--28999
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHC--------------CH--HHH-HHH
Q ss_conf 1454442001111035777531112235201355200233333207998211120--------------84--479-899
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRE--------------SL--EQL-RAL 217 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E--------------~l--EqL-R~l 217 (268)
+.+. +++.-|.-.| ......+-..|+|.|+++++....++.++.....| ++ |-+ +++
T Consensus 154 ~~~~----~~i~~f~EKP--~~~~s~lin~G~Yvf~~~if~~i~~~~~~~~~e~~~~d~~~~~~~~~~~~~e~dvlp~l~ 227 (257)
T cd06428 154 DPST----GEVLHYVEKP--ETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLA 227 (257)
T ss_pred ECCC----CCEEEEEECC--CCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHH
T ss_conf 7899----9599999889--998888089999999889999997518454674101343333466644400032679998
Q ss_pred HCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 789626699845888876899999999999
Q gi|254780765|r 218 EARMRIDVKIVQSNAMSVDTTNDLEKVRTL 247 (268)
Q Consensus 218 eng~~I~~~~~~~~~~~IDt~~Dl~~v~~i 247 (268)
+.| ++.++..++...+|+||+|+..|.++
T Consensus 228 ~~g-~l~~y~~~g~W~DiGTp~~~~~AN~~ 256 (257)
T cd06428 228 GSG-KLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred HCC-CEEEEECCCEEECCCCHHHHHHHHCC
T ss_conf 579-88999389838759898999998743
No 40
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.52 E-value=5e-13 Score=101.56 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=128.5
Q ss_pred CCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCC---CHHHHCCCCCC-----CCCCC
Q ss_conf 656999817767888988---5000006722668999999967-998699986833---00010001222-----22222
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKA-NIGRVIVAVDDT---KINEIVLQAGF-----ESVMT 75 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~---~I~~~~~~~g~-----~~i~t 75 (268)
|++.+||+|-+.|+||-. |.+.+|+|+|++.|++++-... .+++|+|++..+ .+.+.+.++++ .++
T Consensus 1 M~~~~IilAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv-- 78 (238)
T PRK13385 1 MNYELIFLAAGQGKMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVV-- 78 (238)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE--
T ss_conf 956999977734614886899643279978899999999855876787999677888999999998615444768993--
Q ss_pred CCCCCCCCHH---HHHHHHHHCC---CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 2234565204---8999974223---345210000152210100000122333210134432111111220110037544
Q gi|254780765|r 76 HTSHQSGSDR---IFEALNIIDS---DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNI 149 (268)
Q Consensus 76 ~~~~~~GTdR---i~ea~~~l~~---~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~ 149 (268)
.-|.+| ++.+++.+.. ..+.++|+.=-|=-||++++.|+.++....+... .++++.+..+.-...+.+.
T Consensus 79 ----~GG~tR~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~-~~~~~~~~~dti~~~~~~~ 153 (238)
T PRK13385 79 ----AGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGA-VDTVIEAIDTIVMSKDKQN 153 (238)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCEEEEECCCC
T ss_conf ----28986489999999998741147876889995466778999999999999872197-3799961344599926995
Q ss_pred -CEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEE
Q ss_conf -31465145444200111103577753111223520135520023333-3207998211120844798997896266998
Q gi|254780765|r 150 -VKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKI 227 (268)
Q Consensus 150 -vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~ 227 (268)
.+.+ + ...+ .+...| -+|+.+.|.+ |..+.....+..-+ |.--+...|++++.+.
T Consensus 154 i~~t~-d-------R~~l--~~~QTP------------Q~F~~~~L~~a~~~~~~~~~~~~TD-dasl~e~~g~~v~~v~ 210 (238)
T PRK13385 154 IHSIP-V-------RNEM--YQGQTP------------QSFNIKLLQDSYRALSSEQKEILSD-ACKIIVESGHPVKLVR 210 (238)
T ss_pred EEECC-C-------HHHH--HHHCCC------------CCCCHHHHHHHHHHHHHCCCCCCCC-HHHHHHHCCCCEEEEE
T ss_conf 24126-8-------7882--000299------------6135999999999998628998888-9999987799669996
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 458888768999999999997307
Q gi|254780765|r 228 VQSNAMSVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 228 ~~~~~~~IDt~~Dl~~v~~il~~~ 251 (268)
-+...+=|-||+||+.++.+|+.+
T Consensus 211 G~~~NiKIT~~eDL~~a~~ll~~~ 234 (238)
T PRK13385 211 GELYNIKVTTPYDLKVANAIIQGD 234 (238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 696347799899999999997546
No 41
>pfam00483 NTP_transferase Nucleotidyl transferase. This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars.
Probab=99.52 E-value=1.1e-12 Score=99.48 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=130.5
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEE-ECCC--CCHHHHCC---CCCCCCCCCCC
Q ss_conf 998177678889-------88500000672-26689999999679986999-8683--30001000---12222222222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIV-AVDD--TKINEIVL---QAGFESVMTHT 77 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viV-aTdd--~~I~~~~~---~~g~~~i~t~~ 77 (268)
+||+|-+..||| | |||.+++|+ |||+|+++++..++++++++ ++.. +.|.++.. .++.++....+
T Consensus 2 avIlAgG~GtRl~PlT~~~p-Kpllpv~~~~pli~~~l~~l~~~g~~~~~~v~~~~~~~~i~~~~~~~~~~~~~i~~~~e 80 (247)
T pfam00483 2 AIILAGGSGTRLWPLTRTLA-KPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLVAEQLGDGSKFGLQVTYALQ 80 (247)
T ss_pred EEEECCCCCCCCCCCCCCCC-CCEEEECCCCCHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 79988977777880106889-88518289978999999999865995203313367788899998633667743777431
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC--CCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 345652-048999974223345210000152210100000122333210134432--11111122011003754431465
Q gi|254780765|r 78 SHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDI--GTLGTRIHGSTDPDDPNIVKIVV 154 (268)
Q Consensus 78 ~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv--~tl~~~~~~~~~~~d~n~vKvi~ 154 (268)
....|| +.++.|...+.. ...+.++.+.||. +++ ..+.++++.+.+...++ +....+..++..+- . +.+
T Consensus 81 ~~~~Gta~ai~~a~~~l~~-~~~~~~lv~~~D~-~~~-~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~~yG---v--v~~ 152 (247)
T pfam00483 81 PEPRGTAPAVALAADFLGD-DDPELVLVLGGDH-IYR-MDFEEAVQKARAKAADGTVTFGIVPVEDPTGYG---V--IEF 152 (247)
T ss_pred CCCCCCHHHHHHHHHHHCC-CCCCEEEEECCCC-CCC-HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---E--EEE
T ss_conf 2777705689999986434-7876279977853-344-409999999998479986888556555763451---4--898
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCC-CCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHH-HHHHCCCEEEEEEECCC
Q ss_conf 145444200111103577753111-22352013552002333332-0799821112084479-89978962669984588
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPHGTG-PFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQL-RALEARMRIDVKIVQSN 231 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~~~~-~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqL-R~leng~~I~~~~~~~~ 231 (268)
+.+ +++..|--. |.... ..+--.|+|.|+++.+.... .+.++.....+--|.+ +++++|..+..+.....
T Consensus 153 d~~-----~~V~~~~EK--P~~~~~~~~~~~G~Y~~~~~i~~~~~~~~~~~~~~e~~~~d~i~~~i~~g~~~~~~~~~~~ 225 (247)
T pfam00483 153 DEN-----GRVIRFVEK--PDLPKASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGY 225 (247)
T ss_pred CCC-----CCCCCEEEC--CCCHHHHHHEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 886-----650304677--9962443425611499889999999965777767994499999999987996399960798
Q ss_pred --CCCCCCHHHHHHHHHHH
Q ss_conf --88768999999999997
Q gi|254780765|r 232 --AMSVDTTNDLEKVRTLI 248 (268)
Q Consensus 232 --~~~IDt~~Dl~~v~~il 248 (268)
..+|-||+||..|..-|
T Consensus 226 ~~W~DiGt~e~~~~an~~l 244 (247)
T pfam00483 226 AYWSDVGTWDSLWEANLKL 244 (247)
T ss_pred EEEEECCCHHHHHHHHHHH
T ss_conf 8468698999999999998
No 42
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.49 E-value=5.2e-13 Score=101.47 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=122.2
Q ss_pred EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCC---CCCCCCCCCCC
Q ss_conf 6999817767888988---50000067226689999999679-986999868330---00100012---22222222234
Q gi|254780765|r 10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQA---GFESVMTHTSH 79 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~---g~~~i~t~~~~ 79 (268)
+.+||+|-+.++||.. |.+.+|+|+|++.|+++....+. +++|+|+...+. +.+....+ .+.++
T Consensus 1 v~aIIlAaG~G~R~~~~~PKQf~~i~gk~ii~~sl~~f~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~~~i~~v------ 74 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIV------ 74 (218)
T ss_pred CEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEE------
T ss_conf 98999268347148857985233589679999999999758998979999683789999998864479876998------
Q ss_pred CCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH-HCCCCCCCEEEEE
Q ss_conf 565204---899997422334521000015221010000012233321013443211111122011-0037544314651
Q gi|254780765|r 80 QSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST-DPDDPNIVKIVVA 155 (268)
Q Consensus 80 ~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~-~~~d~n~vKvi~~ 155 (268)
.-|.+| ++.+++.+.. .+.++|+.--|.-||++++.|+++++...+ .+.+.++.|..+.- ..++.+.+.-..
T Consensus 75 ~GG~tR~~SV~ngl~~l~~-~~~~~VlIHDaaRP~i~~~~i~~li~~~~~--~~~~i~~~p~~DTik~~~~~~~i~~t~- 150 (218)
T cd02516 75 EGGATRQDSVLNGLKALPD-ADPDIVLIHDAARPFVSPELIDRLIDALKE--YGAAIPAVPVTDTIKRVDDDGVVVETL- 150 (218)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEECCHHCEEEECCCCEEEEEC-
T ss_conf 9984099999989874012-699989992576778999999999999973--787189842510179963897798623-
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 4544420011110357775311122352013552002333332-079982111208447989978962669984588887
Q gi|254780765|r 156 SPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMS 234 (268)
Q Consensus 156 ~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~ 234 (268)
++..+|..-.--+|+.+.|.+-. .......+-..+.+. +...|++|+.++-+...+=
T Consensus 151 --------------------dR~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl--~~~~g~~v~~v~G~~~N~K 208 (218)
T cd02516 151 --------------------DREKLWAAQTPQAFRLDLLLKAHRQASEEGEEFTDDASL--VEAAGGKVALVEGSEDNIK 208 (218)
T ss_pred --------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCCCC
T ss_conf --------------------761379874875425999999999998649997858999--9986997699975875585
Q ss_pred CCCHHHHHHH
Q ss_conf 6899999999
Q gi|254780765|r 235 VDTTNDLEKV 244 (268)
Q Consensus 235 IDt~~Dl~~v 244 (268)
|-||+||+.|
T Consensus 209 IT~~eDl~~A 218 (218)
T cd02516 209 ITTPEDLALA 218 (218)
T ss_pred CCCHHHHHHC
T ss_conf 9989998249
No 43
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.46 E-value=2.4e-12 Score=97.36 Aligned_cols=205 Identities=19% Similarity=0.224 Sum_probs=130.6
Q ss_pred CCCCCEEEEEECCCCCCCCCC-----CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCCC--CCCCCCCC
Q ss_conf 555656999817767888988-----5000006722668999999967-998699986833000100012--22222222
Q gi|254780765|r 5 HIKEKVLVIIPARLNSMRFPK-----KILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQA--GFESVMTH 76 (268)
Q Consensus 5 ~~~~ki~~iIpAR~~S~Rlp~-----K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~~I~~~~~~~--g~~~i~t~ 76 (268)
-.|+++.+||+|-+.|+||-+ |.+.+++|+|+++|++++...+ .+++|+|++..+.+ ++.++. ++.++
T Consensus 2 ~~M~~i~aIIlAAG~G~Rfg~~~~ipKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvvv~~~~~-~~~~~~~~~i~~V--- 77 (382)
T PRK09382 2 TVMSDISLVIVAAGRSTRFGQSAEVKKQWLRIGGKPLWLHVLENFSSAPDFKEIVVVIHPDDI-AYMKRAVPEIKFV--- 77 (382)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHH-HHHHHHCCCCEEE---
T ss_conf 745763799968722504899879997410679778999999999668998989999388899-9999745795793---
Q ss_pred CCCCCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 234565204---89999742233452100001522101000001223332101344321111112201100375443146
Q gi|254780765|r 77 TSHQSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIV 153 (268)
Q Consensus 77 ~~~~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi 153 (268)
.-|.+| ++.+++.++ .++|+.=-|=-||++++.|+++++.+.+. +.+.++.|..+. +|.+
T Consensus 78 ---~GG~tRq~SV~ngL~~i~----~~~VlIHDaARP~vs~~lI~~li~~~~~~--~a~ip~lpv~DT--------ik~~ 140 (382)
T PRK09382 78 ---TGGATRQESVRNALEALD----SEYVLISDAARPFVPKELIDRLIEALDKA--DCVLPALPVADT--------LKRA 140 (382)
T ss_pred ---CCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC--------EEEC
T ss_conf ---785059999999997567----88899955425789999999999865147--761587524335--------0104
Q ss_pred EECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 514544420011110357775311122352013552002333332-0799821112084479899789626699845888
Q gi|254780765|r 154 VASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 154 ~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~ 232 (268)
- +...+.-+ .|...| -+|+.+.|.+-. ....+..+-..+-.. +..+|++|+.+.-+...
T Consensus 141 ~----~tvdR~~l--~~~QTP------------Q~F~~~~L~~a~~~a~~~~~~~TDDasl--~e~~G~~V~~V~G~~~N 200 (382)
T PRK09382 141 N----ETVDREGL--KLIQTP------------QLSRTKTLLAAHRKALSGRTDFTDDSSI--AEAAGGKVALVEGSEDL 200 (382)
T ss_pred C----CCCCHHHC--EEECCC------------CCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCC
T ss_conf 6----64686784--562277------------5355999999999998639986740999--99869927999567548
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 876899999999999730
Q gi|254780765|r 233 MSVDTTNDLEKVRTLIPH 250 (268)
Q Consensus 233 ~~IDt~~Dl~~v~~il~~ 250 (268)
+=|-||+||+.++.+...
T Consensus 201 ~KITtpeDL~~~~~~~~~ 218 (382)
T PRK09382 201 HKLTFKEDLKALDRLSAP 218 (382)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 538999999999864444
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.46 E-value=1.7e-12 Score=98.27 Aligned_cols=201 Identities=17% Similarity=0.217 Sum_probs=119.5
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC---CCCCCCCCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--300010001---222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ---AGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~---~g~~~i~t~~~~ 79 (268)
|||+|-+..||| | |||++++|+|||+|+++....+++++++|+|.. +.|.++..+ .+.+.....++.
T Consensus 1 AiIlaaG~GtRl~~~t~~~P-K~Ll~v~gkplI~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~~~~~~~i~~~~e~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRP-KPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEECCCCCCCCCHHHCCCC-CCCCEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHEEEECCCCCCCEEEEEECCC
T ss_conf 98906888665782136998-40238999449999999999749977999861233100001100125796599953488
Q ss_pred CCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 5652-048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 80 QSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 80 ~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
..|| +++..|.+.+. +.+ ++.+.||. +.+. .+.+++..+.+.+++++.++.+..++..+ .-+.++.++
T Consensus 80 ~~Gt~~al~~a~~~i~---~~~-~lv~~~D~-i~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~y-----g~v~~d~~~ 148 (217)
T cd04181 80 PLGTAGAVRNAEDFLG---DDD-FLVVNGDV-LTDL-DLSELLRFHREKGADATIAVKEVEDPSRY-----GVVELDDDG 148 (217)
T ss_pred CCCCHHHHHHHHCCCC---CCC-EEEECCCC-CCCC-CHHHHHHHHHHCCCCEEEEEEEECCCCCC-----EEEEECCCC
T ss_conf 7763455432100269---997-89972782-2250-89999999975799679998740367763-----089988851
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCC-CCHHHCCHHHHH-HHHCCCEEEEEEECCCCCCC
Q ss_conf 442001111035777531112235201355200233333207998-211120844798-99789626699845888876
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPS-VLEQRESLEQLR-ALEARMRIDVKIVQSNAMSV 235 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t-~lE~~E~lEqLR-~leng~~I~~~~~~~~~~~I 235 (268)
++..|--. |......+--.|+|.|++++|+.+.+.... ..+.. |.+. +++.| ++.++.+++..++|
T Consensus 149 -----~v~~i~EK--p~~~~~~~~~~G~y~~~~~~f~~i~~~~~~~~~~l~---d~~~~l~~~~-kv~~~~~~g~W~Di 216 (217)
T cd04181 149 -----RVTRFVEK--PTLPESNLANAGIYIFEPEILDYIPEILPRGEDELT---DAIPLLIEEG-KVYGYPVDGYWLDI 216 (217)
T ss_pred -----CEEEEEEC--CCCCCCCEEEEEEEEECHHHHHHHHHCCCCCEEEHH---HHHHHHHHCC-CEEEEEECCEEEEC
T ss_conf -----04368988--999878848998999999999976515888751189---9999998579-96999979999917
No 45
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.44 E-value=1.8e-12 Score=98.10 Aligned_cols=106 Identities=28% Similarity=0.415 Sum_probs=85.1
Q ss_pred EEEEECCCCCCCC--CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCCCCCCCCCCCCCCCC-HH
Q ss_conf 9998177678889--8850000067226689999999679986999868--33000100012222222222345652-04
Q gi|254780765|r 11 LVIIPARLNSMRF--PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAGFESVMTHTSHQSGS-DR 85 (268)
Q Consensus 11 ~~iIpAR~~S~Rl--p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g~~~i~t~~~~~~GT-dR 85 (268)
-++|-|-+-++|+ |-|||.+++|+|||.||++...+ .+++|+|+|+ ...+++++.+.|++++-|.++ |= +-
T Consensus 2 ~~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~---GYv~D 77 (177)
T COG2266 2 MAIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE---GYVED 77 (177)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHCCCEEEECCCC---CHHHH
T ss_conf 35896288544468876752020781389999999972-218389996799876999997359369975998---70899
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf 8999974223345210000152210100000122333210
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ 125 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~ 125 (268)
+.+|++.+.. + ++-+.+|-||++|.+|+.+++.+.
T Consensus 78 l~~al~~l~~---P--~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 78 LRFALESLGT---P--ILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHHHCCC---C--EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9999974499---4--599865534178899999999985
No 46
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=1.2e-11 Score=92.92 Aligned_cols=186 Identities=13% Similarity=0.148 Sum_probs=107.6
Q ss_pred CCCCCCEEEEEECCCCCCCCC-CCEECCCCCCC-HHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 755565699981776788898-85000006722-6689999999679986999868330001000122222222223456
Q gi|254780765|r 4 QHIKEKVLVIIPARLNSMRFP-KKILADINGLP-MILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQS 81 (268)
Q Consensus 4 ~~~~~ki~~iIpAR~~S~Rlp-~K~L~~i~gkp-lI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~ 81 (268)
-.|++.+.|||.|=+.|+|+- .|.+.+++|+| |++|++++.... +++|+|++.++.- .++..++.....-..
T Consensus 3 ~~m~~~I~~vILAGGkSsRmG~dKall~~~g~~~Lie~~~~~l~~~-~~~i~is~~~~~~-----~~~~~~i~d~~~~~~ 76 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDKKF-----EFNAPFLLEKESDLF 76 (196)
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH-CCEEEEECCCHHH-----HCCCCEEECCCCCCC
T ss_conf 7653684089973787223999862527699555999999998863-6768996481366-----459988865788988
Q ss_pred CC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC
Q ss_conf 52-04899997422334521000015221010000012233321013443211111122011003754431465145444
Q gi|254780765|r 82 GS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSEN 160 (268)
Q Consensus 82 GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~ 160 (268)
|- .-++.|+..+. .+.+..+-+|+||++++.++.++.. .+.+++.+.. ....
T Consensus 77 GPL~Gi~saL~~~~----~~~~~v~~cD~Pfl~~~~i~~L~~~---~~~~~v~~~~--------------------~~~~ 129 (196)
T PRK00560 77 SPLFGIHNAFLTLQ----TPEIFFISVDTPFVSFESIKKLCGK---ENFSVTYAKS--------------------PTKE 129 (196)
T ss_pred CHHHHHHHHHHHCC----CCCEEEEECCCCCCCHHHHHHHHHC---CCCCEEEEEE--------------------CCCC
T ss_conf 80999999998577----7868999578888899999999722---6999899954--------------------8901
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC-CCCCCHHHCCHHHHHHHHCCCEEEEEEECCC--CCCCCC
Q ss_conf 2001111035777531112235201355200233333207-9982111208447989978962669984588--887689
Q gi|254780765|r 161 GCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQL-SPSVLEQRESLEQLRALEARMRIDVKIVQSN--AMSVDT 237 (268)
Q Consensus 161 ~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l-~~t~lE~~E~lEqLR~leng~~I~~~~~~~~--~~~IDt 237 (268)
+ | -+|+ |+++.|...... .... .-..+|+++ .....+..+.. -..|||
T Consensus 130 ~----------P----------L~al--y~~~~l~~l~~~l~~g~------~~l~~~l~~-~~~~~v~~~~~~~F~NiNT 180 (196)
T PRK00560 130 H----------Y----------LISL--WHRSLLNALNYALKTQN------YRLSDLVKN-SSSQAVHFEDEEEFLNLNT 180 (196)
T ss_pred C----------C----------EEEE--ECHHHHHHHHHHHHCCC------CHHHHHHHH-CCCEEEECCCCCCCCCCCC
T ss_conf 3----------0----------4678--52889999999998299------519999987-8968974599874246899
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999997307
Q gi|254780765|r 238 TNDLEKVRTLIPHD 251 (268)
Q Consensus 238 ~~Dl~~v~~il~~~ 251 (268)
|+||+.|+++|++.
T Consensus 181 peD~~~A~~~lk~~ 194 (196)
T PRK00560 181 LKDYELALQILKSR 194 (196)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998723
No 47
>KOG1322 consensus
Probab=99.40 E-value=9.9e-12 Score=93.49 Aligned_cols=220 Identities=17% Similarity=0.202 Sum_probs=152.1
Q ss_pred CCEEEEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CC-----CHHHHCCCCCCCCC
Q ss_conf 6569998177678889-------8850000067226689999999679986999868--33-----00010001222222
Q gi|254780765|r 8 EKVLVIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DT-----KINEIVLQAGFESV 73 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~-----~I~~~~~~~g~~~i 73 (268)
+.+.++|..-+.-+|| | |||.+++++|||.|.+++|..+++++||++|. ++ ....+..++|++++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~p-KPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~ 86 (371)
T KOG1322 8 QSVKAIILVGGYGTRLRPLTLTRP-KPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEIL 86 (371)
T ss_pred CCEEEEEEECCCCCEEECEECCCC-CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 351589995477744600013688-8665427630527789998757974799997138289999999976124555999
Q ss_pred CCCCCCCCCCHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf 2222345652048999974-223345210000152210100000122333210134432111111220110037544314
Q gi|254780765|r 74 MTHTSHQSGSDRIFEALNI-IDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI 152 (268)
Q Consensus 74 ~t~~~~~~GTdRi~ea~~~-l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv 152 (268)
.+.+.-..||.-.+.++.. |....+..++| |.||.-..- ....+++.+.+...|....+++.+++..+- . +
T Consensus 87 ~s~eteplgtaGpl~laR~~L~~~~~~~ffV-LnsDvi~~~--p~~~~vqfH~~~gae~TI~~t~vdepSkyG---v--v 158 (371)
T KOG1322 87 ASTETEPLGTAGPLALARDFLWVFEDAPFFV-LNSDVICRM--PYKEMVQFHRAHGAEITIVVTKVDEPSKYG---V--V 158 (371)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCEEE-ECCCEEECC--CHHHHHHHHHHCCCCEEEEEEECCCCCCCC---E--E
T ss_conf 9820688765466999998864037986799-557726437--799999999855996589987446853263---6--9
Q ss_pred EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 65145444200111103577753111223520135520023333320799821112084479899789626699845888
Q gi|254780765|r 153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~ 232 (268)
+++.+ .+++.-|+-.|..+....+- -|||+|+++.|.+.- +.+|..|+ |..-++-.+++++++..+.-.
T Consensus 159 ~~d~~----~grV~~F~EKPkd~vsnkin--aGiYi~~~~vL~ri~-~~ptSiek----EifP~~a~~~~l~a~~l~gfW 227 (371)
T KOG1322 159 VIDED----TGRVIRFVEKPKDLVSNKIN--AGIYILNPEVLDRIL-LRPTSIEK----EIFPAMAEEHQLYAFDLPGFW 227 (371)
T ss_pred EEECC----CCCEEEEHHCCHHHHHCCCC--CEEEEECHHHHHHHH-HCCCCHHH----HHHHHHHHCCCEEEEECCCHH
T ss_conf 99358----88255802175656533124--158997799986765-06663011----111556411725899627613
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 876899999999999
Q gi|254780765|r 233 MSVDTTNDLEKVRTL 247 (268)
Q Consensus 233 ~~IDt~~Dl~~v~~i 247 (268)
.+|-+|+|+..+-.+
T Consensus 228 mDIGqpkdf~~g~~~ 242 (371)
T KOG1322 228 MDIGQPKDFLTGFSF 242 (371)
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 206888999888988
No 48
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.40 E-value=3e-11 Score=90.50 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=142.4
Q ss_pred CCCEEEEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHC-CCCCCC----
Q ss_conf 56569998177678889-------88500000672-266899999996799869998683--3000100-012222----
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIV-LQAGFE---- 71 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~-~~~g~~---- 71 (268)
|++++|+|.|-+..||| | ||+.+++|+ +||..++..+..+++++|+|.|.- ..+.++. +.|...
T Consensus 1 m~~v~avILaGG~GtRL~PLT~~rp-Kp~vPf~GrYRlIDf~Lsn~~nsgI~~V~v~tqy~~~sl~~Hl~~~w~~~~~~~ 79 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRA-KPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISRTYNFSGFSQ 79 (429)
T ss_pred CCCEEEEEECCCCCCCCCHHHCCCC-HHHEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf 9843999966888860425445886-773258882420899999898869988999946588999998624215766678
Q ss_pred --C-CC------CCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf --2-22------222345652-0489999742233452100001522101000001223332101344321111112201
Q gi|254780765|r 72 --S-VM------THTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGS 141 (268)
Q Consensus 72 --~-i~------t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~ 141 (268)
+ ++ ..+.+..|| +.+..++..+.. ...+.++.+.||. + ---++..+++.++++.+|+..++.+...+
T Consensus 80 g~v~~l~~~~~~~~~~~~~Gtadai~~~~~~l~~-~~~~~~lV~~GD~-l-~~~D~~~~l~~H~~~~AdiTi~~~~v~~~ 156 (429)
T PRK02862 80 GFVEVLAAQQTPDNPSWFQGTADAVRQYLWLFQE-WDVDEYLILSGDQ-L-YRMDYSLFVQHHRETGADITLAVLPVDEK 156 (429)
T ss_pred CEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCE-E-ECCCHHHHHHHHHHCCCCEEEEEEECCHH
T ss_conf 6068604355147876556648999999999973-7997399974887-7-82699999999997499827998755857
Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHCCCCCC-------------------CCCCCCCCCCEEEEEEEHHHHHHHHCCCC
Q ss_conf 10037544314651454442001111035777-------------------53111223520135520023333320799
Q gi|254780765|r 142 TDPDDPNIVKIVVASPSENGCFRALYFTRTKT-------------------PHGTGPFYQHLGIYAYRREALKRFTQLSP 202 (268)
Q Consensus 142 ~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~i-------------------p~~~~~~~~hvGIy~f~~~~L~~~~~l~~ 202 (268)
+...--+ +.++.+ ++...|.-.|. +...+.+.-..|+|.|+++.|.+...-.+
T Consensus 157 -~~~~fGv--v~~D~~-----grV~~f~EKP~~~~~~~~~~~~~~~~~~~~~~~~~~~lasmGiYif~~~~L~~ll~~~~ 228 (429)
T PRK02862 157 -QASGFGL--MKTDDD-----GRITEFSEKPKGEELKAMAVDTSRLGLSPEEAKEKPYLASMGIYVFSRDVLFDLLNKNP 228 (429)
T ss_pred -HCCCCCE--EEECCC-----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCC
T ss_conf -6553628--999999-----97999995788754442114652235673223567640122599985999999997586
Q ss_pred CCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 82111208447989978962669984588887689999999999973
Q gi|254780765|r 203 SVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIP 249 (268)
Q Consensus 203 t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~ 249 (268)
...+..+ |-+..+-.++++..+..++....|.|++++-.+..-|-
T Consensus 229 ~~~Dfg~--diip~~~~~~~v~~y~~~GYw~dIgti~sy~~AnmdLl 273 (429)
T PRK02862 229 EHTDFGK--EIIPEAARGYNLQAYLFDDYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred CCCHHHH--HHHHHHHCCCEEEEEEECCEEEECCCHHHHHHHHHHHH
T ss_conf 5422388--89999847783899981472687899899999989986
No 49
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.39 E-value=1.8e-12 Score=98.13 Aligned_cols=120 Identities=21% Similarity=0.306 Sum_probs=90.0
Q ss_pred EEEEEECCCCCCCCC-CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCCCCCCCCCCCCCCCCCC-HH
Q ss_conf 699981776788898-8500000672266899999996799869998683--3000100012222222222345652-04
Q gi|254780765|r 10 VLVIIPARLNSMRFP-KKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQAGFESVMTHTSHQSGS-DR 85 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp-~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~~g~~~i~t~~~~~~GT-dR 85 (268)
|.+||.|-+.|+||- .|.|.+++|+||++|+++++..+..++++|+|.. .++.......+..++. .++...|. +-
T Consensus 1 i~~iILAgG~s~RmG~~K~l~~~~g~pli~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~v~-~~~~~~G~~~s 79 (186)
T cd04182 1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPVVVVI-NPDWEEGMSSS 79 (186)
T ss_pred CEEEEECCCCCCCCCCCEECCEECCCCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCEEEE-CCCCCCCCCHH
T ss_conf 96999899765359989125589973199999999997499832523774078999985479936751-78756785378
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 89999742233452100001522101000001223332101344321
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~ 132 (268)
++.++..+.. +++.++.+.||+||+++++++.+++.+......++
T Consensus 80 i~~gl~~~~~--~~~~~lv~~~D~P~i~~~~i~~L~~~~~~~~~~iv 124 (186)
T cd04182 80 LAAGLEALPA--DADAVLILLADQPLVTAETLRALIDAFREDGAGIV 124 (186)
T ss_pred HHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9999997334--88768984377787899999999999975899589
No 50
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.39 E-value=5.2e-11 Score=88.99 Aligned_cols=233 Identities=16% Similarity=0.143 Sum_probs=133.4
Q ss_pred CCCCEEEEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-CCC----
Q ss_conf 556569998177678889-------88500000672-266899999996799869998683--300010001-222----
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-AGF---- 70 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~g~---- 70 (268)
-|++++|||+|-+..+|| | |||.+++|+ |||.|++..+..+++++|+|.|.- +.+.++..+ |+.
T Consensus 2 ~m~~~~aVILAgG~GtRLrPLT~~rp-KpllPvagkyplIdf~Ls~l~~aGi~~v~v~~~y~~~sl~~hi~~~w~~~~~~ 80 (409)
T PRK00844 2 EMPKVLGIVLAGGEGKRLMPLTADRA-KPAVPFGGSYRLIDFVLSNLVNAGLLRICVLTQYKSHSLDRHISQGWRLSGLL 80 (409)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCC-HHCCEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCC
T ss_conf 97876999988998774430006980-44006588360789999999876998899990778799999986272656767
Q ss_pred -CCCCC-------CCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC--C
Q ss_conf -22222-------22345652-0489999742233452100001522101000001223332101344321111112--2
Q gi|254780765|r 71 -ESVMT-------HTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRI--H 139 (268)
Q Consensus 71 -~~i~t-------~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~--~ 139 (268)
..+.. .+.+..|| +.+.++...++. ...++++.+.||. +.--++..+++.++++++++....... .
T Consensus 81 ~~~i~~~~~~~~~~~~~~~Gtadai~~~~~~i~~-~~~d~vlv~~gD~--i~~~dl~~~l~~H~~~~a~~Ti~~~~v~~~ 157 (409)
T PRK00844 81 GEYITPVPAQQRLGKRWYEGSADAIYQSLNLIED-EDPDYVVVFGADH--VYRMDPEQMVEFHIESGAGLTVAGIRVPRE 157 (409)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCE--EECCCHHHHHHHHHHCCCCCEEEEEEECHH
T ss_conf 7358756721246765455778999999988741-7998899978998--970799999999975688634789992668
Q ss_pred CHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCC-----CCCCCCCCCCCEEEEEEEHHHHHHHHCC-CCCCCHHHCCH--
Q ss_conf 011003754431465145444200111103577-----7531112235201355200233333207-99821112084--
Q gi|254780765|r 140 GSTDPDDPNIVKIVVASPSENGCFRALYFTRTK-----TPHGTGPFYQHLGIYAYRREALKRFTQL-SPSVLEQRESL-- 211 (268)
Q Consensus 140 ~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~-----ip~~~~~~~~hvGIy~f~~~~L~~~~~l-~~t~lE~~E~l-- 211 (268)
++..+- + +.++.+ +++.-|.-.| +|......+-..|+|.|+++.|.+...- ...+. ...++
T Consensus 158 ~~~~~G---v--v~~d~~-----g~V~~f~EKP~~~~~~~~~~~~~l~n~GiYvf~~~~L~~~l~~~~~~~~-~~~d~~~ 226 (409)
T PRK00844 158 EASAFG---V--IEVDED-----GRIRGFLEKPADPPGLPDDPDETLASMGNYIFTTDVLIDALREDAEDED-SSHDMGG 226 (409)
T ss_pred HCCCCC---E--EEECCC-----CCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCC-CCCCCHH
T ss_conf 745367---8--998899-----9699998157887677897120112013599519999999987501677-6332067
Q ss_pred HHHH-HHHCCCEEEEEEEC------------CCCCCCCCHHHHHHHH-HHHHCCHHH
Q ss_conf 4798-99789626699845------------8888768999999999-997307245
Q gi|254780765|r 212 EQLR-ALEARMRIDVKIVQ------------SNAMSVDTTNDLEKVR-TLIPHDHHK 254 (268)
Q Consensus 212 EqLR-~leng~~I~~~~~~------------~~~~~IDt~~Dl~~v~-~il~~~~~~ 254 (268)
|.+. +++.|. +..+... .....|.|++++..+. .+|..+...
T Consensus 227 diip~l~~~g~-~~~y~~~~~~v~g~~~~~~GYW~digt~~~y~~an~dlL~~~~~~ 282 (409)
T PRK00844 227 DIIPKLVPRGE-AAVYDFSDNEVPGATERDRGYWRDVGTIDSFYDAHMDLLSVHPVF 282 (409)
T ss_pred HHHHHHHHHCC-EEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHH
T ss_conf 78999986388-689984145445643456505897899899999889986788423
No 51
>PRK01884 consensus
Probab=99.38 E-value=1.8e-11 Score=91.82 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=147.3
Q ss_pred CCCCCCCCEEEEEECCCCCCCCC------CCEECCCCC-CCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-C---
Q ss_conf 87755565699981776788898------850000067-2266899999996799869998683--300010001-2---
Q gi|254780765|r 2 KDQHIKEKVLVIIPARLNSMRFP------KKILADING-LPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-A--- 68 (268)
Q Consensus 2 ~~~~~~~ki~~iIpAR~~S~Rlp------~K~L~~i~g-kplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~--- 68 (268)
|--.||++++++|.|-+..+||- -||..+++| .|+|.+++..+..|++++|+|.|.- ..+.++... |
T Consensus 10 ~~~~~~~~~~avILAGG~GtRL~pLT~~RpkpavPfgGryRiIDF~LSNlvnsGI~~V~V~t~y~~~SL~dHl~~Gw~~~ 89 (435)
T PRK01884 10 NKYDLVKDTLVLILAGGRGSRLHELTDKRAKPALYFGGNRRIIDFALSNCINSGLNRIGVVTQYAAHSLLRHLQTGWSFL 89 (435)
T ss_pred HHHHHHHHEEEEEECCCCCCCCHHHHCCCCHHCCCCCCCCEEEEHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCC
T ss_conf 58775350089996588876151655387151162488871210168678876998899981768799999986163655
Q ss_pred ---CCCCC--C-CC-----CCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ---22222--2-22-----2345652-04899997422334521000015221010000012233321013443211111
Q gi|254780765|r 69 ---GFESV--M-TH-----TSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGT 136 (268)
Q Consensus 69 ---g~~~i--~-t~-----~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~ 136 (268)
+..++ + .. +...+|| |.++..+..+......++|+.+.||.- ---++..+++.+.++++|+...+.
T Consensus 90 ~~~~g~~i~~lp~~~~~~~~~~~~Gtadai~~n~~~i~~~~~~~yVlVl~gD~I--~~~D~~~~l~~H~~~~AdiTva~~ 167 (435)
T PRK01884 90 PQERGEFIDMLPARQQIDDSTWYRGTADAVYQNMAIIKNHYRPKYILILAGDHI--YKQDYSQMLLDHVNSGAKCTVGCI 167 (435)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEE--EECCHHHHHHHHHHCCCCEEEEEE
T ss_conf 557995278678742258875103739999988999972468887999559989--807899999999975998589999
Q ss_pred CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCC-----CCCCCCCCCCEEEEEEEHHHHHHHHCC----CCCCCHH
Q ss_conf 1220110037544314651454442001111035777-----531112235201355200233333207----9982111
Q gi|254780765|r 137 RIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKT-----PHGTGPFYQHLGIYAYRREALKRFTQL----SPSVLEQ 207 (268)
Q Consensus 137 ~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~i-----p~~~~~~~~hvGIy~f~~~~L~~~~~l----~~t~lE~ 207 (268)
+... ++...-.++ .++.+ +++..|.-.|. |-......-..|+|.|+++.|.+.... +.+..+.
T Consensus 168 ~v~~-e~~~~~Gvv--~~d~~-----~rV~~f~EKP~~~~~~~g~~~~~lismGiYvf~~~~L~e~L~~~~~~~~~~~Df 239 (435)
T PRK01884 168 EVPR-EEAHEFGVM--AVNEN-----LKVKAFVEKPKDPPAMVGKPDSSLASMGIYVFDADYLYKMLEREVNTPQTSHDF 239 (435)
T ss_pred ECCH-HHHHHCCEE--EECCC-----CCEEEEEECCCCCCCCCCCCCCCEECCEEEEECHHHHHHHHHHHHCCCCCHHHH
T ss_conf 8687-883007749--98999-----978899956888110379866422023259973999999999763177751257
Q ss_pred HCCHHHHHHHHCCCEEEEEEECC-----------CCCCCCCHHHHHHHHHH-HHCCHHHHH
Q ss_conf 20844798997896266998458-----------88876899999999999-730724568
Q gi|254780765|r 208 RESLEQLRALEARMRIDVKIVQS-----------NAMSVDTTNDLEKVRTL-IPHDHHKGL 256 (268)
Q Consensus 208 ~E~lEqLR~leng~~I~~~~~~~-----------~~~~IDt~~Dl~~v~~i-l~~~~~~~~ 256 (268)
..++ .-+.++.|. +..+..+. ....|.|++++-.+..- +..+....+
T Consensus 240 g~di-ip~~l~~g~-v~ay~f~~~~~G~~~~~~~Yw~dIgt~~sY~~AnmdLL~~~~~~~l 298 (435)
T PRK01884 240 GKDI-LPKALEEGV-LYAHPFSRSCMGRNTEGEIYWRDVGTLDSFWQSNIDLVSENPQLDI 298 (435)
T ss_pred HHHH-HHHHHHCCC-EEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHC
T ss_conf 8989-999985193-8999736764454456772354589989999989998678844432
No 52
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.35 E-value=1.6e-11 Score=92.20 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=131.9
Q ss_pred CCCCEEEEEECCCCCCCC----CCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCC---CCHHHHCC---CCCCCCCC
Q ss_conf 556569998177678889----8850000067226689999999679-9869998683---30001000---12222222
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRF----PKKILADINGLPMILHTAIRARKAN-IGRVIVAVDD---TKINEIVL---QAGFESVM 74 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rl----p~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd---~~I~~~~~---~~g~~~i~ 74 (268)
+++.+.++|||-+..+|+ | |-...++|+||++|+++....+. +++|+|++.- ....++.. ...+.++
T Consensus 1 ~~~~~~~vilAaG~G~R~~~~~p-Kq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~~~~~~~v~~v- 78 (230)
T COG1211 1 MRMMVSAVILAAGFGSRMGNPVP-KQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVV- 78 (230)
T ss_pred CCCEEEEEEECCCCCCCCCCCCC-CEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEE-
T ss_conf 97407999975763433579998-4588999988569999999747676769999784664899986321248707993-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf 2223456520489999742233--45210000152210100000122333210134432111111220110037544314
Q gi|254780765|r 75 THTSHQSGSDRIFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI 152 (268)
Q Consensus 75 t~~~~~~GTdRi~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv 152 (268)
.-|.+|...+.+-+..- .+.++|+.--|=-||++++.|++++... ...+.+.++.|..+.- |.
T Consensus 79 -----~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~alpv~DTi--------k~ 143 (230)
T COG1211 79 -----KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILALPVTDTL--------KR 143 (230)
T ss_pred -----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCCEEEEEECCCCE--------EE
T ss_conf -----48751799999999972115898899964666789999999999862--2388179975046737--------88
Q ss_pred EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEEECCC
Q ss_conf 65145444200111103577753111223520135520023333320799821112084479899-78962669984588
Q gi|254780765|r 153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKIVQSN 231 (268)
Q Consensus 153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~~~~~ 231 (268)
.- .+. ...-+..| ...|+--.--+|+.+.|.+....- ..+..+-.|-.-++ ..|+++..+.-+..
T Consensus 144 ~~-~~~----~i~~t~~R-------~~l~~~QTPQ~F~~~~L~~a~~~a--~~~~~~~tDdas~~e~~G~~v~lV~G~~~ 209 (230)
T COG1211 144 VD-ADG----NIVETVDR-------SGLWAAQTPQAFRLELLKQALARA--FAEGREITDDASAIEKAGGPVSLVEGSAD 209 (230)
T ss_pred EC-CCC----CEEECCCH-------HHHHHHHCCCCCCHHHHHHHHHHH--HHCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 65-898----72344375-------542343387633199999999999--86287768869999876998199826833
Q ss_pred CCCCCCHHHHHHHHHHHHC
Q ss_conf 8876899999999999730
Q gi|254780765|r 232 AMSVDTTNDLEKVRTLIPH 250 (268)
Q Consensus 232 ~~~IDt~~Dl~~v~~il~~ 250 (268)
.+=|-||+||+.++.+++.
T Consensus 210 n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 210 NFKITTPEDLEIAEAILRR 228 (230)
T ss_pred EEEECCHHHHHHHHHHHCC
T ss_conf 0576288899999987526
No 53
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process.
Probab=99.30 E-value=4e-11 Score=89.72 Aligned_cols=214 Identities=17% Similarity=0.229 Sum_probs=128.6
Q ss_pred EEEEECCCCCCCCC---CCEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCC-CCCCCCCCCCC-CCCCCH
Q ss_conf 99981776788898---85000006722668999999967-99869998683300010001-22222222223-456520
Q gi|254780765|r 11 LVIIPARLNSMRFP---KKILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQ-AGFESVMTHTS-HQSGSD 84 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp---~K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~~I~~~~~~-~g~~~i~t~~~-~~~GTd 84 (268)
++||||-+.++||- .|-...|+|+|||.|+++....+ .+++|+|++..+.. +++++ .......+.-. ..-|.+
T Consensus 1 ~avi~AAG~G~R~~~~~pKQy~~l~G~Pll~h~~~~~~~~~~~~~vvVV~~~~~~-~~~~~~~~~~~~~~~~~~v~GG~~ 79 (226)
T TIGR00453 1 SAVIPAAGRGTRMGSGVPKQYLELAGRPLLEHTLDAFLAHPAIDEVVVVVSPDDT-EFFQKALAARAKFKVVKIVAGGDT 79 (226)
T ss_pred CEEEEECCCCEECCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 9687316711133679870266518802217789998632320646898367415-888886325657861158469874
Q ss_pred H---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCC
Q ss_conf 4---8999974223345210000152210100000122333210134432111111220110037544314651454442
Q gi|254780765|r 85 R---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENG 161 (268)
Q Consensus 85 R---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~ 161 (268)
| |..+++.+....++++|+.=-|=-||++++.|+++++...+. .....++.|..+. .|.+ +.++ .
T Consensus 80 Rq~SV~~GL~a~~~~~~~~~VlvHDaARPf~~~~~~~~l~~~~~~~-~~a~~~A~Pv~DT--------lK~~-~~~G--~ 147 (226)
T TIGR00453 80 RQDSVRNGLKALPERADAEIVLVHDAARPFVPKELIDRLLEALEKG-AGAAILALPVADT--------LKRV-DADG--F 147 (226)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCE--------EEEE-CCCC--C
T ss_conf 6899999999876358988289847734588987999999998607-9834874205431--------5774-4888--6
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC--CCCCCCHHHCCHHHHHHHHC-CCEEEEEEECCCCCCCCCH
Q ss_conf 00111103577753111223520135520023333320--79982111208447989978-9626699845888876899
Q gi|254780765|r 162 CFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQ--LSPSVLEQRESLEQLRALEA-RMRIDVKIVQSNAMSVDTT 238 (268)
Q Consensus 162 ~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~--l~~t~lE~~E~lEqLR~len-g~~I~~~~~~~~~~~IDt~ 238 (268)
... +. ++..+|+--.=-||+++.|.+=.. -.....|..-+-+.+.. . |++|..|+-+...+=|=||
T Consensus 148 ~~~--T~-------dR~~Lw~~QTPQ~F~~~~L~~Ah~~~A~~~g~~~TDDA~~~E~--~~G~~v~LVeG~~~n~KiT~P 216 (226)
T TIGR00453 148 VVE--TV-------DREGLWAAQTPQAFRRELLLKAHARAAKAEGFEITDDASAVER--LFGGKVALVEGDADNFKITTP 216 (226)
T ss_pred EEC--CC-------CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH--HCCCCEEEEECCCCCEECCCH
T ss_conf 202--66-------6214525576887688899999999998469851358999999--638972887276101103672
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780765|r 239 NDLEKVRTLI 248 (268)
Q Consensus 239 ~Dl~~v~~il 248 (268)
+||..+|.+|
T Consensus 217 ~DL~~Ae~~l 226 (226)
T TIGR00453 217 EDLALAEALL 226 (226)
T ss_pred HHHHHHHHCC
T ss_conf 7899987509
No 54
>PRK04928 consensus
Probab=99.28 E-value=3.9e-10 Score=83.53 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=134.5
Q ss_pred CCCEEEEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-CCCC----
Q ss_conf 56569998177678889-------88500000672-266899999996799869998683--300010001-2222----
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-AGFE---- 71 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~g~~---- 71 (268)
|++++++|.|-+..+|| | |||.+++|+ |||.|++..+..+++++|+|.|.. +.+.++..+ |+..
T Consensus 1 m~~~~aiILagG~gtRLrPLT~~rp-Kp~lP~~g~yrlIdf~Ls~l~~sGi~~V~v~~~~~~~sl~~hl~~gw~l~~~~~ 79 (405)
T PRK04928 1 MAGVLGMILAGGEGSRLRPLTESRT-KPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQSLYIHMKKGWNINGITD 79 (405)
T ss_pred CCCEEEEEECCCCCCCCCHHHCCCC-HHHEEECCCCCEEHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 9965999978998773323215985-652387885713189999999879988999908887999999746637664135
Q ss_pred -CC--C-----CCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -22--2-----222345652-04899997422334521000015221010000012233321013443211111122011
Q gi|254780765|r 72 -SV--M-----THTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST 142 (268)
Q Consensus 72 -~i--~-----t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~ 142 (268)
++ + +.+....|| +.++.+...++. ...++++.+.||. +.+ -++..+++.++.+.+++...+.+.. .+
T Consensus 80 ~~~~~~p~~~~~~~~~~~Gta~ai~~~~~~l~~-~~~e~~lv~~gD~-l~~-~Dl~~ll~~H~~~~a~iTi~~~~~~-~e 155 (405)
T PRK04928 80 RFIDPIPAQMRTGKRWYEGTADAIYQNLRFIEL-SEPEHVCIFGSDH-IYK-MDIKQMLDFHKEKEAALTVSALRMP-LE 155 (405)
T ss_pred CEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCE-EEC-CCHHHHHHHHHHCCCCCEEEEEECC-HH
T ss_conf 178736224125764456568999999999854-6998899978988-966-8999999999856887316899824-11
Q ss_pred HCCCCCCCEEE-EECCCCCCCHHHHHCCCCCC-----CCCCCCCCCCEEEEEEEHHHHHH-HH---CCCCCCCHHHCCHH
Q ss_conf 00375443146-51454442001111035777-----53111223520135520023333-32---07998211120844
Q gi|254780765|r 143 DPDDPNIVKIV-VASPSENGCFRALYFTRTKT-----PHGTGPFYQHLGIYAYRREALKR-FT---QLSPSVLEQRESLE 212 (268)
Q Consensus 143 ~~~d~n~vKvi-~~~~~~~~~~~alyfsR~~i-----p~~~~~~~~hvGIy~f~~~~L~~-~~---~l~~t~lE~~E~lE 212 (268)
+++.--++ ++.+ +++.-|.-.|- |-......-..|+|.|+++.|.. +. ....+..+.. -|
T Consensus 156 ---~~~~~Gvv~~D~~-----g~V~~f~EKP~~~~~~~g~~~~~li~~GiYvf~~~vl~~~l~~~~~~~~~~~d~~--~d 225 (405)
T PRK04928 156 ---EASQFGVIEVDAE-----GRMIGFEEKPANPKSIPGDPDHALVSMGNYIFEAEVLFKELIEDAANENSSHDFG--KD 225 (405)
T ss_pred ---CCCCCCEEEECCC-----CCEEEEEECCCCCCCCCCCCCCEEEECCEEEECHHHHHHHHHHHHCCCCCCCCCH--HH
T ss_conf ---2553776888899-----9899999768987566798331175032267519999999986501478767415--78
Q ss_pred HH-HHHHCCCEEEEEEE----------CCCCCCCCCHHHHHHHH-HHHHCCHHHHH
Q ss_conf 79-89978962669984----------58888768999999999-99730724568
Q gi|254780765|r 213 QL-RALEARMRIDVKIV----------QSNAMSVDTTNDLEKVR-TLIPHDHHKGL 256 (268)
Q Consensus 213 qL-R~leng~~I~~~~~----------~~~~~~IDt~~Dl~~v~-~il~~~~~~~~ 256 (268)
-+ ++++.| ++.++.. +.....|.|++|+-.+. .+|+.+....+
T Consensus 226 vip~l~~~g-~~~~y~~~~~~i~g~~~~gYW~digt~~~y~~an~dlL~~~~~~~l 280 (405)
T PRK04928 226 IIPKMFPRG-KVFVYDFSTNRIPGEKEEVYWRDVGTIDSYWQAHMDLLKKDAPFSL 280 (405)
T ss_pred HHHHHHHHC-CEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHC
T ss_conf 899998728-8689980244335756650589789878999999998668856652
No 55
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.27 E-value=7.4e-11 Score=88.03 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=77.7
Q ss_pred EEEEEECCCCCCCCC-CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCC-HHHH
Q ss_conf 699981776788898-85000006722668999999967998699986833000100012222222222345652-0489
Q gi|254780765|r 10 VLVIIPARLNSMRFP-KKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGS-DRIF 87 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp-~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GT-dRi~ 87 (268)
+.++|.|-+.|+||- .|.|.+++|+||++|+++++... .++++|+|.+.. +.....++.++.-... ..|. .-++
T Consensus 1 i~aiILAgG~S~RmG~~K~ll~~~g~~li~~~~~~l~~~-~~~v~vv~~~~~--~~~~~~~~~~i~d~~~-~~GPl~gi~ 76 (181)
T cd02503 1 ITGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQ--ERYALLGVPVIPDEPP-GKGPLAGIL 76 (181)
T ss_pred CEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHH-CCCEEEEECCCH--HHHHCCCCEEEECCCC-CCCCHHHHH
T ss_conf 969997897734189985177989840999999999864-680799917727--7663179869947997-878489999
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 999742233452100001522101000001223332101
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
.++..+. .+.++.+-||+||++++++..+++.+.+
T Consensus 77 ~~l~~~~----~~~~lv~~~D~P~i~~~~i~~L~~~~~~ 111 (181)
T cd02503 77 AALRAAP----ADWVLVLACDMPFLPPELLERLLAAAEE 111 (181)
T ss_pred HHHHHCC----CCEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 9986278----7759996479898889999999997326
No 56
>PRK03282 consensus
Probab=99.27 E-value=3.8e-10 Score=83.57 Aligned_cols=239 Identities=17% Similarity=0.146 Sum_probs=134.7
Q ss_pred CCCCCEEEEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-CCCC--
Q ss_conf 5556569998177678889-------88500000672-266899999996799869998683--300010001-2222--
Q gi|254780765|r 5 HIKEKVLVIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-AGFE-- 71 (268)
Q Consensus 5 ~~~~ki~~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~g~~-- 71 (268)
.-|.|+++||.|-+..+|| | |||.+++|+ |||.|++..+..+++++|+|.|.- ..+.++... |...
T Consensus 2 ~~~~~v~avILagG~GtRLrPLT~~rp-Kp~vP~~g~yrlIdf~Lsnl~~~Gi~~v~v~~~y~~~sl~~h~g~~w~~~~~ 80 (406)
T PRK03282 2 RERPKVLGIVLAGGEGKRLMPLTADRA-KPAVPFGGAYRLIDFVLSNLVNAGYLRICVLTQYKSHSLDRHISQTWRMSGL 80 (406)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCC-HHHCEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 978837999978998772330227983-5400658966457999998887699889998177779999998621375565
Q ss_pred ---CCCC-C------CCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ---2222-2------2345652-048999974223345210000152210100000122333210134432111111220
Q gi|254780765|r 72 ---SVMT-H------TSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHG 140 (268)
Q Consensus 72 ---~i~t-~------~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~ 140 (268)
.+.. . +....|| +.++.+...+. +...++++.+.||. +---++..+++.+.++.+++...+.+...
T Consensus 81 ~g~~v~~~~~~~~~g~~~~~Gta~ai~~~~~~l~-~~~~~~vvv~~gD~--v~~~D~~~~l~~H~~~~a~~Ti~~~~v~~ 157 (406)
T PRK03282 81 LGNYITPVPAQQRLGPRWYTGSADAIYQSLNLIY-DEDPDYVVVFGADH--VYRMDPEQMVQQHIESGAGVTVAGIRVPR 157 (406)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCE--EEECCHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf 6637975652123674214577899999999986-26998799978979--98079999999999769985999998276
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHHCCCCC-----CCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCC----CHHHCCH
Q ss_conf 11003754431465145444200111103577-----75311122352013552002333332079982----1112084
Q gi|254780765|r 141 STDPDDPNIVKIVVASPSENGCFRALYFTRTK-----TPHGTGPFYQHLGIYAYRREALKRFTQLSPSV----LEQRESL 211 (268)
Q Consensus 141 ~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~-----ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~----lE~~E~l 211 (268)
++...-.+| .++.++ ++...|.-.| +|......+-..|+|.|+++.|.++....... .+...++
T Consensus 158 -~d~s~~Gvv--~~d~d~----~~V~~f~EKP~~~~~~~~~~~~~l~n~GiYvf~~~~l~~~l~~~~~~~~~~~d~~~di 230 (406)
T PRK03282 158 -SEATAFGVI--DADDDS----GRIREFLEKPADPPGLPDDPDETFASMGNYVFTTKALIDALRADAEDEDSDHDMGGDI 230 (406)
T ss_pred -HHHHHCCEE--EECCCC----CEEEEEEECCCCCCCCCCCCCCEECCCEEEEECHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf -776237818--882899----9799999557876578898010020210699849999999986501777644226778
Q ss_pred HHHHHHHCCCEEEEEEEC------------CCCCCCCCHHHHHHHHHH-HHCCHHHHH
Q ss_conf 479899789626699845------------888876899999999999-730724568
Q gi|254780765|r 212 EQLRALEARMRIDVKIVQ------------SNAMSVDTTNDLEKVRTL-IPHDHHKGL 256 (268)
Q Consensus 212 EqLR~leng~~I~~~~~~------------~~~~~IDt~~Dl~~v~~i-l~~~~~~~~ 256 (268)
..++++.|. ..++.+. +....|.|++++-.+..- +..+...++
T Consensus 231 -~p~l~~~g~-~~~y~~~~~~v~g~~~~~~GYW~dIgt~~~y~~an~dll~~~~~~~l 286 (406)
T PRK03282 231 -IPRFVARGE-AAVYDFSDNEVPGATDRDRGYWRDVGTLDAFYDAHMDLISVHPVFNL 286 (406)
T ss_pred -HHHHHHCCC-EEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCC
T ss_conf -999997098-27998503535575445551798679899999988986277853134
No 57
>PRK03701 consensus
Probab=99.27 E-value=3.5e-10 Score=83.81 Aligned_cols=236 Identities=14% Similarity=0.138 Sum_probs=143.1
Q ss_pred CCCCEEEEEECCCCCCCCC------CCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-CC------
Q ss_conf 5565699981776788898------8500000672-266899999996799869998683--300010001-22------
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRFP------KKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-AG------ 69 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rlp------~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~g------ 69 (268)
..+|++|+|.|-+..+||- -||+.+++|+ +||.+++..+..|++++|+|.|.. ..+.++... ++
T Consensus 16 ~~~~~~aviLAGG~gtRL~pLT~~RpkpaVPf~GrYRlIDF~LSn~vnsGI~~V~V~tq~~~~SL~dHlg~Gw~~~~~~~ 95 (431)
T PRK03701 16 LPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGWSFFNEEM 95 (431)
T ss_pred CCCCEEEEEECCCCCCCCCHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCHHCCCC
T ss_conf 53126999943898764405543884421100785234799999999869998999927888999999863621002257
Q ss_pred --CCCCC------CCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf --22222------222345652-048999974223345210000152210100000122333210134432111111220
Q gi|254780765|r 70 --FESVM------THTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHG 140 (268)
Q Consensus 70 --~~~i~------t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~ 140 (268)
.-.++ ..+....|| |.++..+..+.. ...++||.+.||. +---++..+++.++++.+|+...+.+...
T Consensus 96 ~~~~~~lp~~~~~~~~~~~~Gtadai~~n~~~l~~-~~~eyVvI~~gD~--I~~~D~~~~l~~H~~~gAdiTv~~~~v~~ 172 (431)
T PRK03701 96 NEFVDLLPAQQRMKGENWYRGTADAVTQNLDIIRR-YKAEYVVILAGDH--IYKQDYSRMLIDHVEKGARCTVACMPVPI 172 (431)
T ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCE--EECCCHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 85499777741047886435748999999999974-6998599965988--87589999999999759982699987487
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCC-----CCCCCCCCCCEEEEEEEHHHHHHHHCC----CCCCCHHHCCH
Q ss_conf 110037544314651454442001111035777-----531112235201355200233333207----99821112084
Q gi|254780765|r 141 STDPDDPNIVKIVVASPSENGCFRALYFTRTKT-----PHGTGPFYQHLGIYAYRREALKRFTQL----SPSVLEQRESL 211 (268)
Q Consensus 141 ~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~i-----p~~~~~~~~hvGIy~f~~~~L~~~~~l----~~t~lE~~E~l 211 (268)
++...-.++ .++.+ +++..|...|. |-......-..|+|.|+++.|.++..- +.+......++
T Consensus 173 -e~~~~~GVl--~~D~~-----grV~~f~EKP~~p~~~~~~~~~~~~smgiYVf~~~~L~~ll~~~~~~~~~~~Df~~di 244 (431)
T PRK03701 173 -EEASAFGVM--AVDEN-----DKIIEFVEKPANPPSMPGDPSKSLASMGIYVFDADYLYELLEEDDRDENSSHDFGKDI 244 (431)
T ss_pred -HHCCCCCEE--EECCC-----CCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf -883206859--98899-----9799999558886556898553321005899759999999863301566765437889
Q ss_pred HHHHHHHCCCEEEEEEEC-----------CCCCCCCCHHHHHHHHHHH-HCCHHH
Q ss_conf 479899789626699845-----------8888768999999999997-307245
Q gi|254780765|r 212 EQLRALEARMRIDVKIVQ-----------SNAMSVDTTNDLEKVRTLI-PHDHHK 254 (268)
Q Consensus 212 EqLR~leng~~I~~~~~~-----------~~~~~IDt~~Dl~~v~~il-~~~~~~ 254 (268)
.-++++.|. +.++..+ .....|.|++++-.+..-| ..++..
T Consensus 245 -ip~l~~~~~-v~~y~f~~~~v~~~~~~~gYw~dIgti~sY~~anmdlL~~~~~~ 297 (431)
T PRK03701 245 -IPKITEAGL-AYAHPFPLSCVQSDPDAEPYWRDVGTLEAYWKANLDLASVTPEL 297 (431)
T ss_pred -HHHHHHHCC-EEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf -999986096-89985044444467667772145799999999899873777655
No 58
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.24 E-value=6.4e-11 Score=88.42 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=83.0
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC---CCHHHHCCCCC------CCCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683---30001000122------222222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD---TKINEIVLQAG------FESVMT 75 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd---~~I~~~~~~~g------~~~i~t 75 (268)
|||.|-+..+|| | |||.+|+|+|||+|+++.+..+++.+|+|+|.. ..|..+.+++. ..+...
T Consensus 3 AVILagG~GtRl~plT~~~P-K~Llpi~n~P~i~y~l~~l~~~G~~~i~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 81 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIP-KALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTI 81 (214)
T ss_pred EEEECCCCCCCCCHHHCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99986888766564356998-64668999974999999999869988999957535999999999704566776289996
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 22345652048999974223345210000152210100000122333210134432111111
Q gi|254780765|r 76 HTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTR 137 (268)
Q Consensus 76 ~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~ 137 (268)
..+...|| ++|+..+....+.|+ +.+.|| ++..-.+..+++.++++++.+..+..+
T Consensus 82 ~~~~~~gT---~~aLr~~~~~i~~df-lvl~gD--~i~~i~l~~ll~~Hr~~~a~~T~~l~~ 137 (214)
T cd04198 82 VLDEDMGT---ADSLRHIRKKIKKDF-LVLSCD--LITDLPLIELVDLHRSHDASLTVLLYP 137 (214)
T ss_pred ECCCCCCH---HHHHHHHHHCCCCCE-EEECCC--EEECCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 57987871---999999985189998-998599--836688899999999709948999953
No 59
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.15 E-value=7e-10 Score=81.94 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=107.3
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCC-CHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC---C-------CCC
Q ss_conf 998177678889-------88500000672-266899999996799869998683--300010001---2-------222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGL-PMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ---A-------GFE 71 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gk-plI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~---~-------g~~ 71 (268)
|+|.|-+..+|| | |||.+|+|+ |||.|+++....+++++|+|+|.- +.|.++... + |+.
T Consensus 1 AvIlagG~GtRL~pLT~~~P-Kp~lpi~gk~~iId~~l~~l~~~Gi~~i~i~~~y~~~~i~~hl~~g~~~~~~~~~~gi~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRA-KPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF 79 (200)
T ss_pred CEEECCCCCCCCHHHHCCCC-CCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 98957888863625447997-41308899162079999988767976799834535899999985640125765668589
Q ss_pred CCCC----CCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 2222----22345652-048999974223345210000152210100000122333210134432111111220110037
Q gi|254780765|r 72 SVMT----HTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDD 146 (268)
Q Consensus 72 ~i~t----~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d 146 (268)
.+.. .+....|| +.+..+...++.. +.+.++.+.||. +..-+++++++.++++++++... ..
T Consensus 80 i~~~~~~~~~~~~~Gt~~~i~~~~~~l~~~-~~~~~lv~ngD~--l~~~D~~~~l~~H~~~~a~~Ti~-~~--------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERS-DPEYVLILSGDH--IYNMDYREMLDFHIESGADITVV-YK--------- 146 (200)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEECCCE--EEECCHHHHHHHHHHCCCCEEEE-EE---------
T ss_conf 963133368765534789999999987217-887299976997--87069999999998769998999-98---------
Q ss_pred CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCCEEEE
Q ss_conf 544314651454442001111035777531112235201355200233333207998211120844798-9978962669
Q gi|254780765|r 147 PNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARMRIDV 225 (268)
Q Consensus 147 ~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~~I~~ 225 (268)
+ -.|+|.|+++.|.++..-.+......-.-|.+. +++. .+|..
T Consensus 147 ------i-----------------------------n~GiYi~~~~~l~~~l~~~~~~~~~d~~~d~ip~l~~~-~~v~~ 190 (200)
T cd02508 147 ------A-----------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYA 190 (200)
T ss_pred ------E-----------------------------ECEEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC-CCEEE
T ss_conf ------5-----------------------------04899980899999998632467675589999999603-98899
Q ss_pred EEECCCCCC
Q ss_conf 984588887
Q gi|254780765|r 226 KIVQSNAMS 234 (268)
Q Consensus 226 ~~~~~~~~~ 234 (268)
++.++...+
T Consensus 191 y~~~gyw~D 199 (200)
T cd02508 191 YEFNGYWAD 199 (200)
T ss_pred EECCCEEEC
T ss_conf 966885749
No 60
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.10 E-value=7e-10 Score=81.95 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=85.5
Q ss_pred CCCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC-CCCHHHHCCCCCCCCCCCCCCCCCC-C
Q ss_conf 5565699981776788898850000067226689999999679986999868-3300010001222222222234565-2
Q gi|254780765|r 6 IKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVD-DTKINEIVLQAGFESVMTHTSHQSG-S 83 (268)
Q Consensus 6 ~~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd-d~~I~~~~~~~g~~~i~t~~~~~~G-T 83 (268)
+++...++|.|=+.|+||..|.|..++|+||++|++++.+...- .++|+.. ++. . ....|+.++.-..... | .
T Consensus 1 ~~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~--~-~~~~g~~vv~D~~~~~-GPL 75 (192)
T COG0746 1 MMTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQG--R-YAEFGLPVVPDELPGF-GPL 75 (192)
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEECCEEHHHHHHHHHHCCCC-EEEEECCCCHH--H-HHCCCCCEEECCCCCC-CCH
T ss_conf 99873699977875356788745787982899999998740188-79997687342--4-4316985754788888-878
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 04899997422334521000015221010000012233321013443
Q gi|254780765|r 84 DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVD 130 (268)
Q Consensus 84 dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~d 130 (268)
.-+..|+..+. .+.+..+-||+||+.++.++.+...+......
T Consensus 76 ~Gi~~al~~~~----~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~ 118 (192)
T COG0746 76 AGILAALRHFG----TEWVLVLPCDMPFIPPELVERLLSAFKQTGAA 118 (192)
T ss_pred HHHHHHHHHCC----CCEEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999998579----87599981677878999999999862347884
No 61
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.09 E-value=7.6e-09 Score=75.46 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=141.9
Q ss_pred CCCCCCCCEEEEEECCCCCCCCC------CCEECCCCCCC-HHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-C---
Q ss_conf 87755565699981776788898------85000006722-66899999996799869998683--300010001-2---
Q gi|254780765|r 2 KDQHIKEKVLVIIPARLNSMRFP------KKILADINGLP-MILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-A--- 68 (268)
Q Consensus 2 ~~~~~~~ki~~iIpAR~~S~Rlp------~K~L~~i~gkp-lI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~--- 68 (268)
-.--|.++++++|.|-+..+||- -||..+++|+. ||.+++..+..|++++|.|.|.- ..+.++... |
T Consensus 12 ~~~~~~~~~~aviLAGG~GtRL~pLT~~RpkpavPfgGryRlIDF~LSn~vnsGI~~V~V~t~y~~~SL~dHlg~GW~~~ 91 (431)
T PRK00725 12 LARQLPRKSVALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVITQYQAHSLVRHIQRGWSFF 91 (431)
T ss_pred EECCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCEECCCCEEEHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf 52215676799996388877551554278400315378235402367668875999899992778799999875342444
Q ss_pred ---CCCCC--C------CCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ---22222--2------222345652-04899997422334521000015221010000012233321013443211111
Q gi|254780765|r 69 ---GFESV--M------THTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGT 136 (268)
Q Consensus 69 ---g~~~i--~------t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~ 136 (268)
+..++ + ..+....|| |.+++.+..++. ...++||.+.||. +---++..+++.++++.+|+...+.
T Consensus 92 ~~~~g~~~~~lp~~~~~~~~~~~~Gtadav~~n~~~l~~-~~~eyvvI~~gD~--I~~~D~~~~l~~H~~~gAdiTi~~~ 168 (431)
T PRK00725 92 REERNEFVDLLPAQQRVSEENWYRGTADAVYQNLDIIRR-YKAEYVVILAGDH--IYKMDYSRMLIDHVEKGADCTVGCL 168 (431)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCE--EECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 446896079777611258876546858999999999975-6998799945988--9817999999999877998799999
Q ss_pred CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCC-----CCCCCCCCCCEEEEEEEHHHHHHHHCC----CCCCCHH
Q ss_conf 1220110037544314651454442001111035777-----531112235201355200233333207----9982111
Q gi|254780765|r 137 RIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKT-----PHGTGPFYQHLGIYAYRREALKRFTQL----SPSVLEQ 207 (268)
Q Consensus 137 ~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~i-----p~~~~~~~~hvGIy~f~~~~L~~~~~l----~~t~lE~ 207 (268)
+... ++...-.++. ++.+ +++..|.-.|- |-......-..|+|.|+++.|.++..- +.+..+.
T Consensus 169 ~v~~-~~~~~fGv~~--~D~~-----grV~~f~EKP~~p~~~~g~~~~~l~smGiYvf~~~~L~~~L~~~~~~~~~~~Df 240 (431)
T PRK00725 169 EVPR-EEASAFGVMA--VDEN-----DKIIAFVEKPADPPAMPGDPDKSLASMGIYVFDADYLYELLERDAADPNSSHDF 240 (431)
T ss_pred ECCH-HHCCCCCEEE--ECCC-----CCEEEEEECCCCCCCCCCCCCCCEECCEEEEECHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8487-8855477499--9999-----989999933788434689755330001589985999999998652177642102
Q ss_pred HCCHHHHHHHHCCCEEEEEEEC-----------CCCCCCCCHHHHHHHHH-HHHCCH
Q ss_conf 2084479899789626699845-----------88887689999999999-973072
Q gi|254780765|r 208 RESLEQLRALEARMRIDVKIVQ-----------SNAMSVDTTNDLEKVRT-LIPHDH 252 (268)
Q Consensus 208 ~E~lEqLR~leng~~I~~~~~~-----------~~~~~IDt~~Dl~~v~~-il~~~~ 252 (268)
..++ .-+.++.|. +..+..+ .....|.|++++-.+.. ++..+.
T Consensus 241 g~di-ip~ll~~~~-~~ay~f~~~~~~~~~~~~GYw~dIgt~~sY~~AnmdLL~~~~ 295 (431)
T PRK00725 241 GKDI-IPKIVEEGK-AYAHPFPLSCVRSDPEAEPYWRDVGTLDAYWQANLDLASVVP 295 (431)
T ss_pred HHHH-HHHHHHHCC-EEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 6778-999997498-789862533345665666417887999999999877745784
No 62
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.1e-09 Score=80.82 Aligned_cols=211 Identities=20% Similarity=0.221 Sum_probs=121.4
Q ss_pred EEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCCCCEEEEEC-C--CCCHHHHCCCCCCCC-CCCCCCCCCCC
Q ss_conf 999817767888988---5000006722668999999967998699986-8--330001000122222-22222345652
Q gi|254780765|r 11 LVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKANIGRVIVAV-D--DTKINEIVLQAGFES-VMTHTSHQSGS 83 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~~~~viVaT-d--d~~I~~~~~~~g~~~-i~t~~~~~~GT 83 (268)
-++|.|-+-++||-+ |.|.+++|+|+|.|++++..+.++++++|+| + .+.+.++.+++++++ +.-.++...|.
T Consensus 5 kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN 84 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTN 84 (239)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 47877034455347999714431588673899999998769863999962302789999985189616999689855577
Q ss_pred -H-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC
Q ss_conf -0-489999742233452100001522101000001223332101-3443211111122011003754431465145444
Q gi|254780765|r 84 -D-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN-PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSEN 160 (268)
Q Consensus 84 -d-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~-~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~ 160 (268)
- -++.|...+... ++.+.||- +..|..+++++..-.. --.+. .+. ..... .+..+...+
T Consensus 85 ~~~Sl~~akd~~~~~-----fii~~sD~-vye~~~~e~l~~a~~~~li~d~----~~~--~~~~~---ea~kv~~e~--- 146 (239)
T COG1213 85 TGYSLLLAKDYMDGR-----FILVMSDH-VYEPSILERLLEAPGEGLIVDR----RPR--YVGVE---EATKVKDEG--- 146 (239)
T ss_pred CEEEEEEEHHHHCCC-----EEEEECCE-EECHHHHHHHHHCCCCCEEEEC----CCC--CCCCC---CEEEEEECC---
T ss_conf 646774543463385-----79995787-5068999999847577678952----333--35567---506998449---
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHC--CCEEEEEEEC--C-CCCCC
Q ss_conf 20011110357775311122352013552002333332079982111208447989978--9626699845--8-88876
Q gi|254780765|r 161 GCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEA--RMRIDVKIVQ--S-NAMSV 235 (268)
Q Consensus 161 ~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~len--g~~I~~~~~~--~-~~~~I 235 (268)
+++...++..-.+ -..-+|+.-+..+.+..+-++-. |. ..-++|.++. +++...+.+. + ..++|
T Consensus 147 --G~i~~igK~l~e~----~~e~iGi~~l~~~i~~~~~~~~~---e~--~~~~~~~~~~~~~~~~~~~di~~~g~~w~EV 215 (239)
T COG1213 147 --GRIVEIGKDLTEY----DGEDIGIFILSDSIFEDTYELLV---ER--SEYDYREVEKEAGLPFTEVDIHVDGLFWMEV 215 (239)
T ss_pred --CEEEHHCCCCCCC----CCEEEEEEEECHHHHHHHHHHHH---HH--HHHHHHHHHHHHCCCEEEEECCCCCCEEEEC
T ss_conf --7876210785513----62165358834578787898876---55--6677999999858761785102368524863
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 899999999999730
Q gi|254780765|r 236 DTTNDLEKVRTLIPH 250 (268)
Q Consensus 236 Dt~~Dl~~v~~il~~ 250 (268)
|||+||+++++.+-.
T Consensus 216 DtpeDl~~ar~~~~~ 230 (239)
T COG1213 216 DTPEDLERARKYLVP 230 (239)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 888999999999999
No 63
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.02 E-value=3.7e-09 Score=77.46 Aligned_cols=117 Identities=22% Similarity=0.300 Sum_probs=75.1
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHCCC-C--------CCCCC
Q ss_conf 998177678889-------88500000672266899999996799869998683--300010001-2--------22222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQ-A--------GFESV 73 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd--~~I~~~~~~-~--------g~~~i 73 (268)
|||.|-+..+|| | |+|.+|+|+|||+|+++.+.++++++|+|+|.. +++.++..+ . ...++
T Consensus 3 AVIlagg~gtrl~Plt~~~P-K~lLpi~n~P~i~y~l~~l~~~gi~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIP-KALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVI 81 (216)
T ss_pred EEEECCCCCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 99982789773660006998-65567999997999999999879988999958888999999986243456767644789
Q ss_pred CCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf 2222345652-04899997422334521000015221010000012233321013-443211111
Q gi|254780765|r 74 MTHTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP-IVDIGTLGT 136 (268)
Q Consensus 74 ~t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~-~~dv~tl~~ 136 (268)
........|| +|+.++...+ +.|++| +.||. +..-.+..+++.+.+. ....++++.
T Consensus 82 ~~~~~~~~Gta~~l~~~~~~i----~~dflv-l~gD~--i~~~~l~~~l~~~~~~~~~~~~tl~~ 139 (216)
T cd02507 82 TSDLCESAGDALRLRDIRGLI----RSDFLL-LSCDL--VSNIPLSELLEERRKKDKNAIATLTV 139 (216)
T ss_pred ECCCCCCCCCHHHHHHHHHCC----CCCEEE-ECCCE--EECCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 655688765579999876157----999899-85997--87689899999998748577449999
No 64
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.00 E-value=3.3e-09 Score=77.74 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=72.6
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCC----------CCC
Q ss_conf 998177678889-------8850000067226689999999679986999868--330001000122----------222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAG----------FES 72 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g----------~~~ 72 (268)
|||.|-+..+|| | |+|.+|+|+|||+|+++....+++++|+|++. .++|.++.++.. ..+
T Consensus 3 AVIlAgg~gtRl~PlT~~~P-K~LlPv~n~Pli~y~l~~L~~~G~~ei~v~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~ 81 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKP-RCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVII 81 (217)
T ss_pred EEEECCCCCCCCCHHHCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99987888772562035898-65337999983999999999879977999946899999999984322156677734899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 222223456520489999742233--452100001522101000001223332101
Q gi|254780765|r 73 VMTHTSHQSGSDRIFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 73 i~t~~~~~~GTdRi~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
+ .+++. .+ ..+|+..+... .+.|++ .+.||. +.--.+..+++.|++
T Consensus 82 ~-~~~~~-~~---~Gdalr~l~~~~~i~~dFl-v~~gD~--it~~~l~~~l~~Hr~ 129 (217)
T cd04197 82 I-MSEDC-RS---LGDALRDLDAKGLIRGDFI-LVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred E-ECCCC-CC---HHHHHHHHHHHCCCCCCEE-EEECCC--EECCCHHHHHHHHHH
T ss_conf 7-56888-76---5169998876044789999-997990--413788999999986
No 65
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=3.8e-07 Score=64.88 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=144.9
Q ss_pred CCCEEEEEECCCCCCCC-CC-----CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC-C-----------CH-------
Q ss_conf 56569998177678889-88-----500000672266899999996799869998683-3-----------00-------
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-PK-----KILADINGLPMILHTAIRARKANIGRVIVAVDD-T-----------KI------- 61 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-p~-----K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd-~-----------~I------- 61 (268)
|+---|||||.+=-||| |. |=|.+|-+||+|+++++-|..+++.+++++|+. + ++
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKR 81 (291)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 75317988746764554660035766443666722199999999986997799996698356888676869999999872
Q ss_pred -----HHHCC--CCCCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHCCCCCCCC
Q ss_conf -----01000--122222222223456520-48999974223345210000152210100-0001223332101344321
Q gi|254780765|r 62 -----NEIVL--QAGFESVMTHTSHQSGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIE-PEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 62 -----~~~~~--~~g~~~i~t~~~~~~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~-~~~Id~~i~~~~~~~~dv~ 132 (268)
.+.++ ..++++..+++.+..|.. .++-| +.+-.+. .+.|.| ||.-..+ +.-+..+++.+......+.
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A-~~~vg~E--pFaVlL-~Ddl~~~~~~~l~qmi~~y~~~g~svi 157 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCA-KPFVGDE--PFAVLL-PDDLVDSEKPCLKQMIELYEETGGSVI 157 (291)
T ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH-HHHCCCC--CEEEEE-CCEEECCCCHHHHHHHHHHHHHCCCEE
T ss_conf 779999999723577539998658767601788853-5432898--569981-772632780699999999998599279
Q ss_pred CCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH
Q ss_conf 11111220110037544314651454442001111035777531112235201355200233333207998211120844
Q gi|254780765|r 133 TLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLE 212 (268)
Q Consensus 133 tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE 212 (268)
.+... .+++.+..-++.+.. .......+...+--.|.|-.-...+-.+|-|.++++......+.++..-....=.|
T Consensus 158 -~v~ev-~~e~v~kYGvi~~g~--~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IF~~L~~~~~G~ggEiQLTD 233 (291)
T COG1210 158 -GVEEV-PPEDVSKYGVIDPGE--PVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTD 233 (291)
T ss_pred -EEEEC-CHHHCCCCCEEECCC--CCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCEEEHHH
T ss_conf -99988-878776562672485--03577289977776699999985415765465689999999627999998766799
Q ss_pred HHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHH
Q ss_conf 798997896266998458888768999999999997--3072456887763
Q gi|254780765|r 213 QLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLI--PHDHHKGLYKKIF 261 (268)
Q Consensus 213 qLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il--~~~~~~~~~~~~~ 261 (268)
.++.|-....+..+.+++...++-++.++..+.--+ +.+......++..
T Consensus 234 ai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~~~~~~~~~~l 284 (291)
T COG1210 234 AIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRPKLGAEFKEYL 284 (291)
T ss_pred HHHHHHHHCCEEEEEECCCEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 999998538579999456276168712489999999970866659999999
No 66
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase; InterPro: IPR005771 Uridine 5'-triphosphate:glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose pyrophosphorylase, 2.7.7.9 from EC) is responsible for the synthesis of UDP-glucose, a key compound in the biosynthesis of polysaccharides. Glucose is fermented through the glycolysis step to pyruvate, which in turn is converted to lactate. The glycolytic intermediate glucose 6-phosphate is converted to glucose 1-phosphate by phosphoglucomutase activity, and this metabolite is subsequently converted to UDP-glucose by UDP-glucose pyrophosphorylase (GalU) activity. ; GO: 0003983 UTP:glucose-1-phosphate uridylyltransferase activity, 0006011 UDP-glucose metabolic process.
Probab=98.80 E-value=4.2e-08 Score=70.86 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=140.8
Q ss_pred EEEECCCCCCCC-CC-----CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC------------C-------------
Q ss_conf 998177678889-88-----5000006722668999999967998699986833------------0-------------
Q gi|254780765|r 12 VIIPARLNSMRF-PK-----KILADINGLPMILHTAIRARKANIGRVIVAVDDT------------K------------- 60 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p~-----K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~------------~------------- 60 (268)
|||||-+=-||| |. |=+.+|-+||+|+|+++-|.++|+++++++|+.. |
T Consensus 4 AViPaAGlGTRfLPATKA~PKEMLPiVdKP~IQY~VEEav~aGie~i~~VTGr~K~aIEDHFD~s~ELE~~L~~~~K~~l 83 (270)
T TIGR01099 4 AVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKKNKEEL 83 (270)
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88527675310023451688656764587421045798986489347999658850101425878889999875104889
Q ss_pred ---HHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC-----HHHHHHHHHCCCCCCC
Q ss_conf ---00100012222222222345652-04899997422334521000015221010000-----0122333210134432
Q gi|254780765|r 61 ---INEIVLQAGFESVMTHTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPE-----ILASVLLPLQNPIVDI 131 (268)
Q Consensus 61 ---I~~~~~~~g~~~i~t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~-----~Id~~i~~~~~~~~dv 131 (268)
|.+++.. ++++...||+..-|- |.|.- ++.+-.+. .+.|.| ||.-..+.+ .+..|++.+....+.+
T Consensus 84 L~~v~~I~~~-~~~i~yvRQke~kGLGhAvL~-a~~~vGdE--pFaV~L-gDdi~~~~~~D~~~~Lkqm~~~Y~~~g~s~ 158 (270)
T TIGR01099 84 LKEVRKISNL-NANIFYVRQKEQKGLGHAVLC-ARPLVGDE--PFAVLL-GDDIVVSEEPDLQEALKQMIDLYEKYGCSI 158 (270)
T ss_pred HHHHHHHCCC-CCCEEEEECCCCCCCCHHHHH-CCCCCCCC--CEEEEE-CCEEEECCCCCHHHHHHHHHHHHHHHCCEE
T ss_conf 9999986269-972899813888855127543-52125888--606763-526563588754689999999998638817
Q ss_pred CCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHH--HHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHC
Q ss_conf 111111220110037544314651454442001--111035777531112235201355200233333207998211120
Q gi|254780765|r 132 GTLGTRIHGSTDPDDPNIVKIVVASPSENGCFR--ALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRE 209 (268)
Q Consensus 132 ~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~--alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E 209 (268)
.- +... .+++...--++.+-.+. .+..... +..+-=.|-|-.-....-.+|=|.|+++.-....+++++..--..
T Consensus 159 ia-V~~V-p~e~V~~YGii~~~~dy-~~~~~y~s~i~~mVEKP~~e~APSNLAi~GRYvL~P~IF~~L~~t~~G~GgEIQ 235 (270)
T TIGR01099 159 IA-VEEV-PKEEVSKYGIIDGEGDY-LEEGLYESVIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGKGGEIQ 235 (270)
T ss_pred EE-EEEC-CHHHCCCCEEECCCCCH-HHCCCEEEEEECCEECCCCCCCCCCEEEECHHCCCHHHHHHHHHCCCCCCCCCH
T ss_conf 88-8634-45517755157274200-012322342214140766788874210220011685688887617999997311
Q ss_pred CHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 8447989978962669984588887689999999
Q gi|254780765|r 210 SLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEK 243 (268)
Q Consensus 210 ~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~ 243 (268)
=.|.||.+--.-.|.++.+++...++=++.++-+
T Consensus 236 LTDAl~~l~~~e~v~A~~f~G~ryD~G~~~Gy~~ 269 (270)
T TIGR01099 236 LTDALRKLLKKERVLAYKFEGKRYDCGSKLGYLK 269 (270)
T ss_pred HHHHHHHHHHCCCEEEEEEECCEEEECCCCCCEE
T ss_conf 8889999862397788875031665448333100
No 67
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=98.71 E-value=7.7e-08 Score=69.20 Aligned_cols=175 Identities=22% Similarity=0.269 Sum_probs=108.8
Q ss_pred EEEECCCC---CCCCCCCEECCC----CCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCC-C
Q ss_conf 99817767---888988500000----672266899999996799869998683300010001222222222234565-2
Q gi|254780765|r 12 VIIPARLN---SMRFPKKILADI----NGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSG-S 83 (268)
Q Consensus 12 ~iIpAR~~---S~Rlp~K~L~~i----~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~G-T 83 (268)
+|||.+-- =|||- ..|-+- .-+-|+.+|+..++.++..+|+|+|+|+.+...+..+|..++.+.+ .| .
T Consensus 2 aviPvK~~~~aKtRLs-~~L~~~eR~~L~~~ml~dtl~~l~~~~~~~v~vvt~d~~~~~~a~~~g~~~i~~~~---~gLn 77 (195)
T TIGR03552 2 AVIPVKRLANAKSRLS-PVLSPEEREELALAMLRDVITALRGAGAGAVLVVSPDPALLEAARNLGAPVLRDPG---PGLN 77 (195)
T ss_pred EEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEECCC---CCHH
T ss_conf 1783688874520045-30799999999999999999999858997189990987899999871997982699---8889
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCH
Q ss_conf 04899997422334521000015221010000012233321013443211111122011003754431465145444200
Q gi|254780765|r 84 DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCF 163 (268)
Q Consensus 84 dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~ 163 (268)
+|+.+++..+.... .-++.+.||.|++++++|..++....... ++ ..|- . +...
T Consensus 78 ~al~~a~~~~~~~~--~~vlii~aDlP~l~~~~l~~~l~~~~~~~--vv--i~P~-------------------~-dGGT 131 (195)
T TIGR03552 78 NALNAALAEAREPG--GAVLILMADLPLLTPRELKRLLAAATEGD--VV--IAPD-------------------R-GGGT 131 (195)
T ss_pred HHHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHHCCCCC--EE--EEEC-------------------C-CCCE
T ss_conf 99999999987389--93899658878899999999998444489--79--9711-------------------8-9984
Q ss_pred HHHHCCCC-CCC--CCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHH
Q ss_conf 11110357-775--311122352013552002333332079982111208447989978962669984588887689999
Q gi|254780765|r 164 RALYFTRT-KTP--HGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND 240 (268)
Q Consensus 164 ~alyfsR~-~ip--~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~D 240 (268)
++|..++. .++ |+.+.+.+|. +. +-+.|....++...+-+++||||+|
T Consensus 132 n~L~~~~~~~~~~~fG~~S~~~H~------------------------~~-----a~~~~~~~~~~~~~~l~~DiDt~~D 182 (195)
T TIGR03552 132 NALFLRPPSALRPAFGGDSFLRHR------------------------RS-----AAKRGLRVRIYDSFGLALDVDTPED 182 (195)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHH------------------------HH-----HHHCCCCCEEECCCCEEECCCCHHH
T ss_conf 278862798766201850799999------------------------99-----9976998238647643354899899
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780765|r 241 LEKVR 245 (268)
Q Consensus 241 l~~v~ 245 (268)
|..+-
T Consensus 183 L~~~~ 187 (195)
T TIGR03552 183 LAEAL 187 (195)
T ss_pred HHHHH
T ss_conf 99999
No 68
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=66.41 Aligned_cols=239 Identities=17% Similarity=0.171 Sum_probs=150.9
Q ss_pred CCCCCEEEEEECCCCCCCCC------CCEECCCCCCC-HHHHHHHHHHHCCCCEEEEECCCC--CHHHHCCC--------
Q ss_conf 55565699981776788898------85000006722-668999999967998699986833--00010001--------
Q gi|254780765|r 5 HIKEKVLVIIPARLNSMRFP------KKILADINGLP-MILHTAIRARKANIGRVIVAVDDT--KINEIVLQ-------- 67 (268)
Q Consensus 5 ~~~~ki~~iIpAR~~S~Rlp------~K~L~~i~gkp-lI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~~-------- 67 (268)
.|+++++++|.|-+..+||. .||-.+++|+- ||--+...|..|++.+|.|.|--+ -+.++...
T Consensus 1 ~~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~ 80 (393)
T COG0448 1 MMKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR 80 (393)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCC
T ss_conf 97446699997589877552245475034444276468986770000103887699994355367999862898656655
Q ss_pred -CCCCCCCC------CCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf -22222222------22345652-04899997422334521000015221010000012233321013443211111122
Q gi|254780765|r 68 -AGFESVMT------HTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIH 139 (268)
Q Consensus 68 -~g~~~i~t------~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~ 139 (268)
.+.=.++. .+....|| +++++-+..+. ..++++|+.|.||- |-.-+...+++.+.+..+|+...+.+..
T Consensus 81 ~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~-~~~~eyvlIlsgDh--IYkmDy~~ml~~H~~~gadiTv~~~~Vp 157 (393)
T COG0448 81 KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIR-RSDPEYVLILSGDH--IYKMDYSDMLDFHIESGADVTVAVKEVP 157 (393)
T ss_pred CCCCEEEECCHHCCCCCCCEECCHHHHHHHHHHHH-HCCCCEEEEECCCE--EEECCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 55847995711125787312044799997689997-43988899952877--8944899999999981998799999879
Q ss_pred CHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC----CCCCCHHHCCHHHHH
Q ss_conf 0110037544314651454442001111035777531112235201355200233333207----998211120844798
Q gi|254780765|r 140 GSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQL----SPSVLEQRESLEQLR 215 (268)
Q Consensus 140 ~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l----~~t~lE~~E~lEqLR 215 (268)
.. +...-.+.+ ++.+ +++..|.-.|-.-...+..-..|||.|++++|.++-.- +.+....-. |.++
T Consensus 158 ~~-eas~fGim~--~D~~-----~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Dfgk--diIp 227 (393)
T COG0448 158 RE-EASRFGVMN--VDEN-----GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGK--DIIP 227 (393)
T ss_pred HH-HHHHCCCEE--ECCC-----CCEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCCCHHH--HHHH
T ss_conf 67-600248158--8799-----978873526676886653135566998299999999987416677331067--7889
Q ss_pred -HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HCCHHHHHH
Q ss_conf -997896266998458888768999999999997-307245688
Q gi|254780765|r 216 -ALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLI-PHDHHKGLY 257 (268)
Q Consensus 216 -~leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il-~~~~~~~~~ 257 (268)
.++.|. +.+++.+...-.|.|-+-+-.+.--| ...+...+|
T Consensus 228 ~~~~~~~-v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~ly 270 (393)
T COG0448 228 KLLERGK-VYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLY 270 (393)
T ss_pred HHHHCCC-EEEEECCCHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8875087-778742566652663999998438762899755324
No 69
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase; InterPro: IPR011831 This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2, beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this entry. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This entry describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.; GO: 0008878 glucose-1-phosphate adenylyltransferase activity.
Probab=98.60 E-value=3.9e-07 Score=64.78 Aligned_cols=242 Identities=16% Similarity=0.192 Sum_probs=150.0
Q ss_pred EEEEEECCCCCCCCC------CCEECCCCCCC-HHHHHHHHHHHCCCCEEEEEC--CCCCHHHHCC---CCCCCC-C---
Q ss_conf 699981776788898------85000006722-668999999967998699986--8330001000---122222-2---
Q gi|254780765|r 10 VLVIIPARLNSMRFP------KKILADINGLP-MILHTAIRARKANIGRVIVAV--DDTKINEIVL---QAGFES-V--- 73 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp------~K~L~~i~gkp-lI~~v~~~a~~s~~~~viVaT--dd~~I~~~~~---~~g~~~-i--- 73 (268)
++++|.|=+.-|||- .||=.+++||- ||-=++..|..|++.+|+|.| -...+..+.. .|++.- +
T Consensus 1 ~la~iLAGG~GsRL~pLT~~rAKPAVpFGGkYRiIDF~LSNc~NSGi~ri~VLTQY~~~sL~~Hi~iG~~W~~~~~~~~~ 80 (421)
T TIGR02091 1 VLAMILAGGQGSRLSPLTKRRAKPAVPFGGKYRIIDFALSNCINSGINRIGVLTQYKSHSLNRHIQIGRGWDFDGPEIGG 80 (421)
T ss_pred CEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 97889438887546133465257765556301452100135554154457888505167888884068765677442476
Q ss_pred --------C----CCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf --------2----222345652-048999974223345210000152210100000122333210134432111111220
Q gi|254780765|r 74 --------M----THTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHG 140 (268)
Q Consensus 74 --------~----t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~ 140 (268)
+ ..++.-.|| |.|++-+..|+.-.++++|+.|-||-- =.-+...+++.|.++++|+...+.+...
T Consensus 81 fv~~Lpa~~~~~~~~~~WY~GTADAvYQNl~~i~~~~~p~yvlILsGDHi--YkMDy~~mL~~H~e~~Ad~Tia~~~Vp~ 158 (421)
T TIGR02091 81 FVELLPAQQRFEESGKDWYQGTADAVYQNLDLIEETYDPEYVLILSGDHI--YKMDYEKMLDYHIEKGADLTIACIPVPR 158 (421)
T ss_pred CEEEECCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEECCCCE--ECCCHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf 26764375111267885321123788999998740169248999346610--1048789999998567987998542785
Q ss_pred HHHCCC---------CCCCEEEEECCCCCCC------HHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCC----C
Q ss_conf 110037---------5443146514544420------01111035777531112235201355200233333207----9
Q gi|254780765|r 141 STDPDD---------PNIVKIVVASPSENGC------FRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQL----S 201 (268)
Q Consensus 141 ~~~~~d---------~n~vKvi~~~~~~~~~------~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l----~ 201 (268)
+ +... -+++... ++-.+.. ..+-.+-..+.....++++-.-|||.|++++|.++-.. +
T Consensus 159 ~-eAs~fGvm~vD~~g~i~~F~--EKP~~P~~~~~~~~~~s~~~~~~~~~~~~~yLASMGiYiF~~~~L~~~L~~d~~~~ 235 (421)
T TIGR02091 159 K-EASRFGVMQVDEDGRIVDFE--EKPANPPSIPGDPDKSSDLGLSKLDAQKGPYLASMGIYIFDKDVLKELLEEDAKDP 235 (421)
T ss_pred H-HCCCCCEEEECCCCCEEEEE--CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCEEEECHHHHHHHHHHHHCCC
T ss_conf 5-51528728887899688888--26888866777767744404551453347744755513645789999999975387
Q ss_pred CCCCHHHCCHHHHHHHHCCCEEEEEEEC----------CCCCCCCCHHHHHHHH-HHHHCC----HHHHHH
Q ss_conf 9821112084479899789626699845----------8888768999999999-997307----245688
Q gi|254780765|r 202 PSVLEQRESLEQLRALEARMRIDVKIVQ----------SNAMSVDTTNDLEKVR-TLIPHD----HHKGLY 257 (268)
Q Consensus 202 ~t~lE~~E~lEqLR~leng~~I~~~~~~----------~~~~~IDt~~Dl~~v~-~il~~~----~~~~~~ 257 (268)
.|..--=.++ .=+.++.|.++.++... ...-+|=|-+=|-.|. .+.+.+ +-.++|
T Consensus 236 ~s~~DFGkdi-IP~~~~~g~~~~Ay~F~~s~v~g~~~e~YWrDVGTidsfweANmdL~~~~~PqvP~f~lY 305 (421)
T TIGR02091 236 ESSHDFGKDI-IPKLLEEGKSVQAYDFSQSCVPGEEKEGYWRDVGTIDSFWEANMDLVSEVKPQVPPFDLY 305 (421)
T ss_pred CCCCCCCHHH-HHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6777544356-889850897189980467605687888762230040656675187627888888877763
No 70
>pfam01983 CofC Guanylyl transferase CofC like. Coenzyme F420 is a hydride carrier cofactor that functions during methanogenesis. This family of proteins represents CofC, a nucleotidyl transferase that is involved in coenzyme F420 biosynthesis. CofC has been shown to catalyse the formation of lactyl-2-diphospho-5'-guanosine from 2-phospho-L-lactate and GTP.
Probab=98.42 E-value=1.2e-06 Score=61.67 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=103.2
Q ss_pred EEEEECCC---CCCCCCCCEECCC----CCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCC-CCCCCCCCCCCCCCCC
Q ss_conf 99981776---7888988500000----67226689999999679986999868330001000-1222222222234565
Q gi|254780765|r 11 LVIIPARL---NSMRFPKKILADI----NGLPMILHTAIRARKANIGRVIVAVDDTKINEIVL-QAGFESVMTHTSHQSG 82 (268)
Q Consensus 11 ~~iIpAR~---~S~Rlp~K~L~~i----~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~-~~g~~~i~t~~~~~~G 82 (268)
.+|||.+- .=|||- ..|-+= .-+-|+..|+..+.. . .++|++.|+.+.+++. ..|+.++-.. .+|
T Consensus 2 ~vvIPvK~f~~aKtRLs-~~Ls~eeR~~La~~Ml~dVl~al~~--~-~v~vvs~d~~v~~~a~~~~g~~v~~~~---~~g 74 (217)
T pfam01983 2 RIIIPVSANNHPKTRLS-SILSEEERKELLRLMLLDVIDALKP--V-DVLVFSEDEVVLPSALDVLGVEVVVET---ESD 74 (217)
T ss_pred EEEEECCCCCCCCHHCC-CCCCHHHHHHHHHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHHCCCCEEEECC---CCC
T ss_conf 79997168875400023-1079999999999999999998633--8-669993758877888861795487348---746
Q ss_pred C-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCC
Q ss_conf 2-048999974223345210000152210100000122333210134432111111220110037544314651454442
Q gi|254780765|r 83 S-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENG 161 (268)
Q Consensus 83 T-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~ 161 (268)
- +.+.+++.. ..++-++.+.||-|+++++.++.++....+. +++ .+|- .. ..
T Consensus 75 LN~Av~~a~~~----~~~~~v~Iv~aDLPli~~~~l~~ll~~~~~~--~vv--I~P~--r~--gG--------------- 127 (217)
T pfam01983 75 LNTAVNQAFMA----PEEAPVIIIPSDIPLISKEVLKRFLETEGRA--DVV--IAPG--RG--GG--------------- 127 (217)
T ss_pred HHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHCCCC--CEE--ECCC--CC--CC---------------
T ss_conf 78999999972----8998689970766789989999999837788--889--7456--78--96---------------
Q ss_pred CHHHHHCCCCCCC--CCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHH
Q ss_conf 0011110357775--31112235201355200233333207998211120844798997896266998458888768999
Q gi|254780765|r 162 CFRALYFTRTKTP--HGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTN 239 (268)
Q Consensus 162 ~~~alyfsR~~ip--~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~ 239 (268)
.++|..+....+ |+...+.+|+ +- +-+.|..+.++...+-+++||||+
T Consensus 128 -TN~L~~~p~~~~~~Yg~~Sf~~H~------------------------~~-----A~~~gl~~~v~~~~~l~~DIDtpe 177 (217)
T pfam01983 128 -TNMLLLRKRGFRVSYHFGSFFKHL------------------------EE-----ARKRGLKAKIYDSFYSSVDINTEE 177 (217)
T ss_pred -EEEEEECCCCCCCCCCCCCHHHHH------------------------HH-----HHHCCCCEEEECCCCEEEECCCHH
T ss_conf -337987677752277877899999------------------------99-----998799689961775446079989
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999730724568877634
Q gi|254780765|r 240 DLEKVRTLIPHDHHKGLYKKIFN 262 (268)
Q Consensus 240 Dl~~v~~il~~~~~~~~~~~~~~ 262 (268)
||..+-.- ........|.+..+
T Consensus 178 DL~ell~h-g~g~~t~~~L~~~g 199 (217)
T pfam01983 178 DLGEIMMH-GSGTKSYEYLRKLG 199 (217)
T ss_pred HHHHHHHH-CCCHHHHHHHHHCC
T ss_conf 99999981-89817899999769
No 71
>KOG1462 consensus
Probab=98.41 E-value=4.4e-07 Score=64.45 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=74.6
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCC------CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCC--CCCC
Q ss_conf 877555656999817767888988------50000067226689999999679986999868330001000122--2222
Q gi|254780765|r 2 KDQHIKEKVLVIIPARLNSMRFPK------KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAG--FESV 73 (268)
Q Consensus 2 ~~~~~~~ki~~iIpAR~~S~Rlp~------K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g--~~~i 73 (268)
.-+..|.+.-+++-|-+|++|+|- |+|.+|+++|||+|+.+-+...++.+++|++.-++..+.-...+ ...-
T Consensus 2 ~~as~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~ 81 (433)
T KOG1462 2 HFASPMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLK 81 (433)
T ss_pred CCCCCHHHHHHHEEECCCCEECHHHHHHCCHHHCCCCCCCEEEEEHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCC
T ss_conf 75662687655325258960454445236321124589643641266897569738999953788999999875077543
Q ss_pred CCCCCC---------CCCCHHHHHHHHHHCCCCCC-CEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 222234---------56520489999742233452-100001522101000001223332101344321111
Q gi|254780765|r 74 MTHTSH---------QSGSDRIFEALNIIDSDKKS-QIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLG 135 (268)
Q Consensus 74 ~t~~~~---------~~GTdRi~ea~~~l~~~~~~-d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~ 135 (268)
+ +++| .-|| ++.+..+-...+. |++| |.|| |++--.+-.+++.|...+...+.+.
T Consensus 82 ~-~~~~v~ip~~~~~d~gt---adsLr~Iy~kikS~Dflv-lsCD--~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462 82 K-RPDYVEIPTDDNSDFGT---ADSLRYIYSKIKSEDFLV-LSCD--FVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred C-CCCEEEEECCCCCCCCC---HHHHHHHHHHHCCCCEEE-EECC--CCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 2-13279830456334477---888865455414687799-9653--0268880888988752476586775
No 72
>KOG1460 consensus
Probab=98.35 E-value=9.7e-07 Score=62.34 Aligned_cols=196 Identities=15% Similarity=0.215 Sum_probs=97.2
Q ss_pred CEEEEEEC--CCCCCC-------CCCCEECCCCCCCHHHHHHHHHHH-CCCCEEEEEC--CCCCHHHHC----CCCCCCC
Q ss_conf 56999817--767888-------988500000672266899999996-7998699986--833000100----0122222
Q gi|254780765|r 9 KVLVIIPA--RLNSMR-------FPKKILADINGLPMILHTAIRARK-ANIGRVIVAV--DDTKINEIV----LQAGFES 72 (268)
Q Consensus 9 ki~~iIpA--R~~S~R-------lp~K~L~~i~gkplI~~v~~~a~~-s~~~~viVaT--dd~~I~~~~----~~~g~~~ 72 (268)
++.++|.. --+-+| +| |||.+|+|.|||+|-+.+|++ +++.+|++.- ++.+..+++ ..+...+
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vP-KPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460 2 KVKAVILVGGPQKGTRFRPLSFNVP-KPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCCHHHHHHHHHHHHHCCCCH
T ss_conf 3379999558888851034435899-875431885140406898751656023367740450589999999986446525
Q ss_pred CCCCCCCCCCCH-HHHH-HHHHHCCCCCCCEEEE--CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 222223456520-4899-9974223345210000--15221010000012233321013443211111122011003754
Q gi|254780765|r 73 VMTHTSHQSGSD-RIFE-ALNIIDSDKKSQIIVN--MQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPN 148 (268)
Q Consensus 73 i~t~~~~~~GTd-Ri~e-a~~~l~~~~~~d~vV~--lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n 148 (268)
=.-+++..-||. -.++ .-..+......-+++| +|||-|| ..+.+.+.....-...++++.. .+... |
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl------~~ml~ahr~~g~~~tll~tkvs-~e~as--n 151 (407)
T KOG1460 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPL------QDMLEAHRRYGGIGTLLVTKVS-REQAS--N 151 (407)
T ss_pred HHHCCCCCCCCCCCEEEHHHHHHCCCCCEEEEEECCEECCCCH------HHHHHHHHHCCCCEEEEEEEEC-HHHHH--C
T ss_conf 5434578877665322444577469986289970550158747------9999998633884599999755-76751--0
Q ss_pred CCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCC
Q ss_conf 431465145444200111103577753111223520135520023333320799821112084479899789
Q gi|254780765|r 149 IVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEAR 220 (268)
Q Consensus 149 ~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng 220 (268)
..-++.+.. .++.|.+.-.|-.|.+.. -.+|||.|.++.+.....--+-.-+..|-.++++.++-|
T Consensus 152 fG~lV~dP~----t~evlHYveKPsTfvSd~--InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g 217 (407)
T KOG1460 152 FGCLVEDPS----TGEVLHYVEKPSTFVSDI--INCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPG 217 (407)
T ss_pred CCEEEECCC----CCCEEEEECCCCHHHHCC--CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 571540687----673578505862353335--011489946899788999999877655454216344877
No 73
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A; InterPro: IPR013482 In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulphoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. This entry describes proteobacterial MobA (molybdopterin-guanine dinucleotide biosynthesis protein A). MobA synthesises molybdopterin-guanine dinucleotide from molybdopterin and GTP. ; GO: 0003824 catalytic activity, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.30 E-value=1.2e-06 Score=61.81 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=84.4
Q ss_pred EEEEEECCCCCCCCC--CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC-CCCHHHHC-CCCCCCCCCCCCC---CC--
Q ss_conf 699981776788898--850000067226689999999679986999868-33000100-0122222222223---45--
Q gi|254780765|r 10 VLVIIPARLNSMRFP--KKILADINGLPMILHTAIRARKANIGRVIVAVD-DTKINEIV-LQAGFESVMTHTS---HQ-- 80 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp--~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd-d~~I~~~~-~~~g~~~i~t~~~---~~-- 80 (268)
+-+||.|=+-++|+= -|-|..++|+|||+||++|.. ..+++|+|+-. |. ..|. ..+|..|+- .+ +.
T Consensus 1 i~gviLAGG~arRMGG~DKGL~~L~g~PL~~hv~~rL~-PQv~~~~IsANRn~--~~Y~~~g~Gl~V~~--D~~DA~~~F 75 (202)
T TIGR02665 1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLR-PQVSDLAISANRNP--ERYAQAGFGLPVVP--DDVDALADF 75 (202)
T ss_pred CCEEEECCCCCCCCCCCCCCCEECCCCCHHHHHHHHHC-CCHHHHHHHCCCCH--HHHHHHCCCCEECC--CCCCCCCCC
T ss_conf 97367658740026888866101286528999999843-50766674138897--78988608973127--853435788
Q ss_pred CC-CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 65-204899997422334521000015221010000012233321013443211
Q gi|254780765|r 81 SG-SDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGT 133 (268)
Q Consensus 81 ~G-TdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~t 133 (268)
.| -.=+.-+++..-.....++||.+-||.||++.+.++++.......+.+++.
T Consensus 76 ~GPLAGilagL~~a~~~~~~~~vl~~PCD~P~lP~dLv~RL~~a~~~~~a~iav 129 (202)
T TIGR02665 76 PGPLAGILAGLRWAVAGTGTDWVLTVPCDTPFLPEDLVARLAAALEAQDADIAV 129 (202)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 887689999999998446998288822888998878999999997528997899
No 74
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.25 E-value=2.5e-05 Score=53.52 Aligned_cols=102 Identities=12% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCCCCCCCCEECCCCC--CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf 6788898850000067--22668999999967998699986833000100012222222222345652---048999974
Q gi|254780765|r 18 LNSMRFPKKILADING--LPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGS---DRIFEALNI 92 (268)
Q Consensus 18 ~~S~Rlp~K~L~~i~g--kplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GT---dRi~ea~~~ 92 (268)
||. .|.|..+.| .|||+|++++... -+++|+|++...+- ...++..++- |...|. .-+..++..
T Consensus 1 MG~----DKAll~~~G~~~tLlerv~~~l~~-~~~~V~vv~~~~~~---~~~~~~~vi~---D~~pg~GPL~Gi~~gL~~ 69 (178)
T PRK00576 1 MGR----DKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP---LPELPAPVLR---DEVRGLGPLPATGRGLRA 69 (178)
T ss_pred CCC----CCEEEEECCCCCCHHHHHHHHHHH-HCCEEEEECCCCCC---CCCCCCCEEC---CCCCCCCCHHHHHHHHHH
T ss_conf 998----877427679982599999999986-58989998899876---6568998860---589997858999999999
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 223345210000152210100000122333210134432
Q gi|254780765|r 93 IDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDI 131 (268)
Q Consensus 93 l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv 131 (268)
.. ....+.+..+-+|+||++++.++.+.........++
T Consensus 70 a~-~~~~~~v~v~acDmP~l~~~lv~~L~~~~~~~~~~v 107 (178)
T PRK00576 70 AA-EAGARLAFVCAVDMPYLTPELIDDLARPAVRTDAEV 107 (178)
T ss_pred HH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 98-658781899745788899999999998754479868
No 75
>TIGR00454 TIGR00454 conserved hypothetical protein TIGR00454; InterPro: IPR005245 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=98.24 E-value=3.6e-06 Score=58.77 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=81.7
Q ss_pred EEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECC-C-CCHHHHCCCCCCCCC-----CCCCCC
Q ss_conf 999817767888988---50000067226689999999679-986999868-3-300010001222222-----222234
Q gi|254780765|r 11 LVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVD-D-TKINEIVLQAGFESV-----MTHTSH 79 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTd-d-~~I~~~~~~~g~~~i-----~t~~~~ 79 (268)
.++|=|=++-|||-+ |||.+++|++||-|++.+-+++. ++.|+++|. + ..=.+++.+.+.++- =+++
T Consensus 2 ~aL~MaGGkGTRlg~d~EKPL~evcGr~lIDhvl~~l~~~~GV~~ii~~TSPhTP~Te~y~~~~~~~~~~ivvidasG-- 79 (204)
T TIGR00454 2 LALVMAGGKGTRLGRDVEKPLLEVCGRKLIDHVLEALKKAKGVDNIIVVTSPHTPKTEEYVAEKYKEYKRIVVIDASG-- 79 (204)
T ss_pred CCEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCC--
T ss_conf 502405887312265556533756585045777786640478753799837779763788730585045788997699--
Q ss_pred CCC-CHHHHHHHHHHCC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf 565-2048999974223-345210000152210100000122333210
Q gi|254780765|r 80 QSG-SDRIFEALNIIDS-DKKSQIIVNMQADIPNIEPEILASVLLPLQ 125 (268)
Q Consensus 80 ~~G-TdRi~ea~~~l~~-~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~ 125 (268)
.| -|-..|++.+++. ..++-+|++ .|-|++.+..||-++..|-
T Consensus 80 -kGYiEDl~E~~~hlE~~~~EP~lV~s--sDl~~~r~~~id~Ivd~y~ 124 (204)
T TIGR00454 80 -KGYIEDLREVLSHLELAFSEPLLVVS--SDLVLVRDKIIDSIVDAYY 124 (204)
T ss_pred -CCCHHHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHHHHHH
T ss_conf -96025278999987766339857874--3602433677877764321
No 76
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.16 E-value=1.3e-05 Score=55.29 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=93.0
Q ss_pred EEEEEECCCCCCCC--------CCCEECCC-CCCCHHHHHHHHHHHC-CCCEEEEECCCC---CHHHHCCCCCCC-CCCC
Q ss_conf 69998177678889--------88500000-6722668999999967-998699986833---000100012222-2222
Q gi|254780765|r 10 VLVIIPARLNSMRF--------PKKILADI-NGLPMILHTAIRARKA-NIGRVIVAVDDT---KINEIVLQAGFE-SVMT 75 (268)
Q Consensus 10 i~~iIpAR~~S~Rl--------p~K~L~~i-~gkplI~~v~~~a~~s-~~~~viVaTdd~---~I~~~~~~~g~~-~i~t 75 (268)
+.+||.|-+.-+|| | |.+.++ +|+||+++|++|+... ..++++|+|..+ .+.+.+.+...+ -++.
T Consensus 1 i~~VIlaGG~GtRLWPlSr~~~P-KQf~~~~~~~sLlq~T~~R~~~~~~~~~i~IvTn~~~~~~v~~ql~~~~~~~~ii~ 79 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYP-KQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIIL 79 (274)
T ss_pred CEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 98999479860446875588899-77521799998999999987468986780999572179999999884398664896
Q ss_pred CCCCCCCCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCH----HHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 223456520-48999974223345210000152210100000----1223332101344321111112201100375443
Q gi|254780765|r 76 HTSHQSGSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEI----LASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIV 150 (268)
Q Consensus 76 ~~~~~~GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~----Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~v 150 (268)
-| ..++|- .++-|+..+....+..+++.+.+|--.-+.+. |...++... +..++|.-.+-+.|+--... .
T Consensus 80 EP-~~rnTApAI~laa~~~~~~~~d~~l~v~PsDH~I~d~~~F~~~i~~a~~~a~--~~~ivt~GI~P~~P~TgYGY--I 154 (274)
T cd02509 80 EP-EGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRPETGYGY--I 154 (274)
T ss_pred CC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCEE--E
T ss_conf 76-8889799999999999975999779998474020088999999999999973--39889974213778988628--9
Q ss_pred EEEEECCCCCCCHHHHHCCCCCCC------CCCCCCCCCEEEEEEEHHHHH-HHHCCCC
Q ss_conf 146514544420011110357775------311122352013552002333-3320799
Q gi|254780765|r 151 KIVVASPSENGCFRALYFTRTKTP------HGTGPFYQHLGIYAYRREALK-RFTQLSP 202 (268)
Q Consensus 151 Kvi~~~~~~~~~~~alyfsR~~ip------~~~~~~~~hvGIy~f~~~~L~-~~~~l~~ 202 (268)
+ .+.........+.-|--.|-. ..+++++.--||++|+.+++. .|..+.+
T Consensus 155 ~--~~~~~~~~~~~V~~F~EKP~~~~A~~~i~sg~y~WNsGiFv~~~~~~l~~~~~~~p 211 (274)
T cd02509 155 E--AGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAP 211 (274)
T ss_pred E--ECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHCH
T ss_conf 8--57535777425788764798899999987599033002322009999999998799
No 77
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=2.1e-05 Score=54.06 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=61.3
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC-CCHHHHC-CCCCCCCCCCCCCCC--
Q ss_conf 998177678889-------88500000672266899999996799869998683-3000100-012222222222345--
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDD-TKINEIV-LQAGFESVMTHTSHQ-- 80 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd-~~I~~~~-~~~g~~~i~t~~~~~-- 80 (268)
|+|.|.+=+||| | |+|.+++|+|||++.++..+..++++|+|+|+= ++-.++. .++++..+. .++..
T Consensus 3 AIIlAAG~gsR~~plT~~tp-K~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~FeYLkdKy~vtLvy-N~kY~~y 80 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTP-KSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFEYLKDKYDVTLVY-NPKYREY 80 (231)
T ss_pred EEEEECCCCCCCCCCCCCCC-HHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHCCEEEEE-CCHHHHH
T ss_conf 18994255665331310287-678873585509999999997798618999631489999998715749995-7407766
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 652048999974223345210000152210100
Q gi|254780765|r 81 SGSDRIFEALNIIDSDKKSQIIVNMQADIPNIE 113 (268)
Q Consensus 81 ~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~ 113 (268)
+-+.-.+.|...|. ..+|+ .+|.-|..
T Consensus 81 Nn~ySlyla~d~l~----ntYii--dsDnyl~k 107 (231)
T COG4750 81 NNIYSLYLARDFLN----NTYII--DSDNYLTK 107 (231)
T ss_pred HHHHHHHHHHHHHC----CCEEE--CCCHHHHH
T ss_conf 30999999999852----56795--05047666
No 78
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=97.59 E-value=0.00049 Score=45.48 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 22668999999967998699986833000100012222222222345652048999974223345210000152210100
Q gi|254780765|r 34 LPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIE 113 (268)
Q Consensus 34 kplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~ 113 (268)
.-|+.+|+..+... +.+|-|+|.|+++...+.+. ++.. .++ .|+ ++..|+..+... +-|+.+|+|-||+.
T Consensus 31 laML~dvi~Al~~~-~~~i~Vvtpde~~~~~a~~~--~vl~-d~d-LN~--Ai~aa~~~~~~p---~~v~vvmaDLPLl~ 100 (210)
T COG1920 31 LAMLVDVLGALAGV-LGEITVVTPDEEVLVPATKL--EVLA-DPD-LNT--AINAALDEIPLP---SEVIVVMADLPLLS 100 (210)
T ss_pred HHHHHHHHHHHHHH-CCCCEEECCCHHHHHHCCCC--EEEE-CCC-HHH--HHHHHHHHCCCC---CCEEEEECCCCCCC
T ss_conf 99999999986400-47752876876762100034--0451-410-678--999998627887---61699844554379
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCC---CCCCCCCCCCCCEEEEEEE
Q ss_conf 0001223332101344321111112201100375443146514544420011110357---7753111223520135520
Q gi|254780765|r 114 PEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRT---KTPHGTGPFYQHLGIYAYR 190 (268)
Q Consensus 114 ~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~---~ip~~~~~~~~hvGIy~f~ 190 (268)
+++|.++++..++ +|++..-..-. . .++++ -|. ...|.-..+++|+
T Consensus 101 ~~~i~~~~~~~~d--~dvviaP~~gG------G----------------Tn~L~-~r~~~~~~~y~g~SF~~Hl------ 149 (210)
T COG1920 101 PEHIERALSAAKD--ADVVIAPGRGG------G----------------TNVLF-ARKSAFRPRYGGVSFLRHL------ 149 (210)
T ss_pred HHHHHHHHHHCCC--CCEEEECCCCC------C----------------EEEEE-EECCCCCCCCCCCCHHHHH------
T ss_conf 9999999973477--76898207999------6----------------67899-8445444234685288899------
Q ss_pred HHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 0233333207998211120844798997896266998458888768999999999997307245688
Q gi|254780765|r 191 REALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLY 257 (268)
Q Consensus 191 ~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~~~~~~ 257 (268)
|. +=+.|....++...+-+.+||||+||-.+... -..+....|
T Consensus 150 ---------------~~--------Ark~G~~~~~~dSf~l~~DVDtpeDL~e~~~h-G~g~~~~~~ 192 (210)
T COG1920 150 ---------------EE--------ARKRGLVVLTYDSFGLSADVDTPEDLVEAFIH-GVGPATKRA 192 (210)
T ss_pred ---------------HH--------HHHCCCEEEEECCCCEECCCCCHHHHHHHHHH-CCCHHHHHH
T ss_conf ---------------99--------98769889972354111377988899999994-885788988
No 79
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00087 Score=43.91 Aligned_cols=189 Identities=14% Similarity=0.217 Sum_probs=98.9
Q ss_pred EEEEEECCCCCCCC--------CCCEECCC-CCCCHHHHHHHHHHH-CCCCEEEEECCCC---CHHHHCCCCCCCC---C
Q ss_conf 69998177678889--------88500000-672266899999996-7998699986833---0001000122222---2
Q gi|254780765|r 10 VLVIIPARLNSMRF--------PKKILADI-NGLPMILHTAIRARK-ANIGRVIVAVDDT---KINEIVLQAGFES---V 73 (268)
Q Consensus 10 i~~iIpAR~~S~Rl--------p~K~L~~i-~gkplI~~v~~~a~~-s~~~~viVaTdd~---~I~~~~~~~g~~~---i 73 (268)
++.+|.|-++-+|| | |.++++ ++++|++.|++|+.. ...++++|+|..+ .+.+...+.+.+. +
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~P-KQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~i 80 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYP-KQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGI 80 (333)
T ss_pred CEEEEEECCCCCCCCCCCCCCCC-CCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 12599707876536876754377-23034179971899999987514785660999577999999998664101256606
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC----HHHHHHHHHCCCCCCCCCCCCCCCCHHH---CCC
Q ss_conf 222234565204899997422334521000015221010000----0122333210134432111111220110---037
Q gi|254780765|r 74 MTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPE----ILASVLLPLQNPIVDIGTLGTRIHGSTD---PDD 146 (268)
Q Consensus 74 ~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~----~Id~~i~~~~~~~~dv~tl~~~~~~~~~---~~d 146 (268)
+.-|.-.+-.-.++-|+..+......-+++.|..|--.-+.+ .++...+.-.+. .++|.-...+.|+- |..
T Consensus 81 llEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g--~lVTfGI~Pt~PeTGYGYIe 158 (333)
T COG0836 81 ILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG--GIVTFGIPPTRPETGYGYIE 158 (333)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCCCCCCEEE
T ss_conf 8545787749999999999987589838999447556556899999999999999719--87998327898866741463
Q ss_pred CCCCEEEEECCCCCCCHHHHHCCCCCCC-----C-CCCCCCCCEEEEEEEHHH-HHHHHCCCCCCCHH
Q ss_conf 5443146514544420011110357775-----3-111223520135520023-33332079982111
Q gi|254780765|r 147 PNIVKIVVASPSENGCFRALYFTRTKTP-----H-GTGPFYQHLGIYAYRREA-LKRFTQLSPSVLEQ 207 (268)
Q Consensus 147 ~n~vKvi~~~~~~~~~~~alyfsR~~ip-----~-~~~~~~~hvGIy~f~~~~-L~~~~~l~~t~lE~ 207 (268)
+... + .... ....--|--.|.- | .++++|.--|+++|+... |+++....+..++.
T Consensus 159 ~G~~-~-~~~~----~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~ 220 (333)
T COG0836 159 TGES-I-AENG----VYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCA 220 (333)
T ss_pred CCCC-C-CCCC----CEEEEEEEECCCHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHCCHHHHH
T ss_conf 2862-4-5678----25755531388789999999739657632316888899999998609099999
No 80
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=97.44 E-value=0.01 Score=37.21 Aligned_cols=213 Identities=18% Similarity=0.172 Sum_probs=116.5
Q ss_pred EEEECCCCCCCC------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCCCCCCCC-----------
Q ss_conf 998177678889------885000006722668999999967998699986833--0001000122222-----------
Q gi|254780765|r 12 VIIPARLNSMRF------PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIVLQAGFES----------- 72 (268)
Q Consensus 12 ~iIpAR~~S~Rl------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~~~g~~~----------- 72 (268)
+||.|=+=-||+ .=||+.+|+|||+|+|+..-=..-++.+-|||.+=+ -|.++--.|....
T Consensus 3 aViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkGy~IKeyF~NY~l~~SDvT~~l~~n~ 82 (256)
T TIGR02623 3 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKGYVIKEYFANYFLHMSDVTIDLEDNT 82 (256)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEECCEEEEEECCCE
T ss_conf 79971786443224353589760776796377889999975283302788534332201001063231131678751570
Q ss_pred ---------------CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf ---------------2222234565204899997422334521000015221010000012233321013443-211111
Q gi|254780765|r 73 ---------------VMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVD-IGTLGT 136 (268)
Q Consensus 73 ---------------i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~d-v~tl~~ 136 (268)
|=|...-.+| .|+.-+...+..+.. +..-.||- +..-.|..+|..++..... -+|++.
T Consensus 83 ~~~H~~~~EPW~VTLvDTG~~t~TG-GRl~Rv~~~~~~d~~---Fc~TYGDG--v~~~~I~~~~~~H~~~g~~AT~tAv~ 156 (256)
T TIGR02623 83 IEVHEKRAEPWRVTLVDTGESTQTG-GRLKRVREYLEDDEA---FCLTYGDG--VADIDIKALIAFHRKHGKKATVTAVQ 156 (256)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCC-CHHHHHHHHHCCCCC---EEEEECCC--CCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 4531213897168888568776678-327889998437876---89871585--03325899999988629806788607
Q ss_pred CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHH
Q ss_conf 12201100375443146514544420011110357775311122352013552002333332079982111208447989
Q gi|254780765|r 137 RIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRA 216 (268)
Q Consensus 137 ~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~ 216 (268)
|-- .+-. ..++.. ....|.- .|.+....- -=|.+...+++|.- ..-..|..|. |-|++|
T Consensus 157 PPG---RfGa-----L~~~~~------~V~~F~E--KP~gd~g~i-NGGFFVL~P~V~d~-I~~D~~~wE~-~~L~~L-- 215 (256)
T TIGR02623 157 PPG---RFGA-----LELEGE------SVTSFQE--KPLGDGGLI-NGGFFVLNPSVLDL-IDGDATVWES-EPLETL-- 215 (256)
T ss_pred CCC---CEEE-----EEECCC------CEEEECC--CCCCCCEEE-ECCEEEECCCEEEE-ECCCCEEECC-HHHHHH--
T ss_conf 888---3023-----677255------1111014--748898168-06568748320202-2488502010-378999--
Q ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 978962669984588887689999999999973072
Q gi|254780765|r 217 LEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDH 252 (268)
Q Consensus 217 leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~ 252 (268)
-+.-...++.=.+-....||..|=...+.+=+.++
T Consensus 216 -~~~g~L~aY~H~GFW~PMDTLRDk~~L~~LW~~~~ 250 (256)
T TIGR02623 216 -AQRGELSAYEHSGFWQPMDTLRDKNKLEELWESNR 250 (256)
T ss_pred -HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf -74488137851775685222566799998875378
No 81
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.36 E-value=0.0023 Score=41.23 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=56.9
Q ss_pred EEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC--CCEEEEECCC--CCHHHHCCCCCC---CCCCCCCCCCCCCH
Q ss_conf 9981776788898850000067226689999999679--9869998683--300010001222---22222223456520
Q gi|254780765|r 12 VIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN--IGRVIVAVDD--TKINEIVLQAGF---ESVMTHTSHQSGSD 84 (268)
Q Consensus 12 ~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~--~~~viVaTdd--~~I~~~~~~~g~---~~i~t~~~~~~GTd 84 (268)
++|||+.. .|+|.++++++.+.. ..+++|++++ +...+...+... ...........|+.
T Consensus 1 iii~~~n~--------------~~~l~~~l~si~~~~~~~~eiiiid~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 66 (156)
T cd00761 1 VIIPAYNE--------------EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLA 66 (156)
T ss_pred EEEEECCC--------------HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 09998898--------------8999999999982899897999998999800221000001456638995056787846
Q ss_pred H-HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH-CCCCCCC
Q ss_conf 4-899997422334521000015221010000012233321-0134432
Q gi|254780765|r 85 R-IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPL-QNPIVDI 131 (268)
Q Consensus 85 R-i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~-~~~~~dv 131 (268)
. +..++.. .+.++|+.+.+|.++.. ..+..++..+ .+...++
T Consensus 67 ~~~n~~~~~----~~~~~v~~~d~D~~~~~-~~~~~~~~~~~~~~~~~~ 110 (156)
T cd00761 67 AARNAGLKA----ARGEYILFLDADDLLLP-DWLERLVAELLADPEADA 110 (156)
T ss_pred HHHHHHHHH----CCCCEEEEECCCCCCCH-HHHHHHHHHHHHCCCEEE
T ss_conf 887788874----89999999999985787-499999999998878799
No 82
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=97.05 E-value=0.0051 Score=39.13 Aligned_cols=194 Identities=18% Similarity=0.215 Sum_probs=99.6
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC--C--EEEEECC--CCCHHHHCCCC---CCCCCCCCC
Q ss_conf 5656999817767888988500000672266899999996799--8--6999868--33000100012---222222222
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI--G--RVIVAVD--DTKINEIVLQA---GFESVMTHT 77 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~--~--~viVaTd--d~~I~~~~~~~---g~~~i~t~~ 77 (268)
...+.++|||+-.. +.|..+++.+..... + +|||+-| ++.-.+.++++ ++.++...+
T Consensus 28 ~P~VsViIP~yNE~--------------~~i~~~l~sl~~q~Yp~~~~eVIvvdD~StD~T~ei~~~~~~~~~~v~~~~~ 93 (251)
T cd06439 28 LPTVTIIIPAYNEE--------------AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPE 93 (251)
T ss_pred CCEEEEEEEECCCH--------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99359999738988--------------9999999999966999887899999799981499999997455850431677
Q ss_pred CCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEC
Q ss_conf 345652-0489999742233452100001522101000001223332101344321111112201100375443146514
Q gi|254780765|r 78 SHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVAS 156 (268)
Q Consensus 78 ~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~ 156 (268)
..|- ..+..+++. .+.++|+.+-+|. .++|+.+..++..|.+++...++......+.....
T Consensus 94 --n~Gk~~AlN~gi~~----a~gd~i~~lDaD~-~~~~~~l~~l~~~f~d~~vg~V~g~~~~~~~~~~~----------- 155 (251)
T cd06439 94 --RRGKAAALNRALAL----ATGEIVVFTDANA-LLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSG----------- 155 (251)
T ss_pred --CCCHHHHHHHHHHH----CCCCEEEECCCCC-CCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHH-----------
T ss_conf --76799999999987----6789898337876-51876999999986099838997148704898037-----------
Q ss_pred CCCCCCHHHHHCC-----CCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEEEC
Q ss_conf 5444200111103-----5777531112235-201355200233333207998211120844-79899789626699845
Q gi|254780765|r 157 PSENGCFRALYFT-----RTKTPHGTGPFYQ-HLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKIVQ 229 (268)
Q Consensus 157 ~~~~~~~~alyfs-----R~~ip~~~~~~~~-hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~~~ 229 (268)
....+|++ |.. ........- +-+.++|+++.+..|.. . ...|+.| .+|++..|+++...+--
T Consensus 156 -----~~~~~y~~~~~~~~~~-~s~~~~~~~~~G~~~~~Rr~~~~~~~~---~--~~~ED~dl~~rl~~~G~ki~y~p~a 224 (251)
T cd06439 156 -----SGEGLYWKYENWLKRA-ESRLGSTVGANGAIYAIRRELFRPLPA---D--TINDDFVLPLRIARQGYRVVYEPDA 224 (251)
T ss_pred -----HHHHHHHHHHHHHHHH-HHHCCCEEEECCHHHHHHHHHHCCCCC---C--CCCCHHHHHHHHHHCCCEEEECCCC
T ss_conf -----8999999999999999-985499248866899958999809787---7--7653899999999869979974885
Q ss_pred C-CCCCCCCHHHHHH
Q ss_conf 8-8887689999999
Q gi|254780765|r 230 S-NAMSVDTTNDLEK 243 (268)
Q Consensus 230 ~-~~~~IDt~~Dl~~ 243 (268)
. ....-.|..++-+
T Consensus 225 ~~~~~~p~t~~~~~k 239 (251)
T cd06439 225 VAYEEVAEDGSEEFR 239 (251)
T ss_pred EEEEECCCCHHHHHH
T ss_conf 899878899999999
No 83
>KOG1461 consensus
Probab=96.89 E-value=0.011 Score=37.03 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCCEEEEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCCCCC---CC
Q ss_conf 56569998177678889-------8850000067226689999999679986999868--330001000122222---22
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAGFES---VM 74 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g~~~---i~ 74 (268)
.....||..|----+|| | +.|.++.+.|||.++..-.-.+++.+|+|.+. ...|.+++++-.+.- .+
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p-~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461 22 EHRLQAILLADSFETRFRPLTLEKP-RVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred CCCEEEEEEECCCHHCCCCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 4641799972141002231335787-447564471679999999986596189999514579999998635203665602
Q ss_pred CCCCCCCCCHH-HHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHH----CCCCCCCCCCCCCC
Q ss_conf 22234565204-89999742233--4521000015221010000012233321----01344321111112
Q gi|254780765|r 75 THTSHQSGSDR-IFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPL----QNPIVDIGTLGTRI 138 (268)
Q Consensus 75 t~~~~~~GTdR-i~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~----~~~~~dv~tl~~~~ 138 (268)
+.--+ +|-.| +.+|+..++.. ...|+ +.|.||. ++--.+.++++.+ +..+.-+.|++.+-
T Consensus 101 v~ti~-s~~~~S~GDamR~id~k~litgDF-iLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~ 167 (673)
T KOG1461 101 VVTIC-SGESRSVGDAMRDIDEKQLITGDF-ILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVFKE 167 (673)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHCCEEECCE-EEEECCE--EECCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 79980-788672888988877426010646-9983773--4247569999999987651724357899822
No 84
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=96.70 E-value=0.0095 Score=37.43 Aligned_cols=183 Identities=22% Similarity=0.250 Sum_probs=90.2
Q ss_pred EEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC---C--C-HHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 6999817767888988500000672266899999996799869998683---3--0-00100012222222222345652
Q gi|254780765|r 10 VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD---T--K-INEIVLQAGFESVMTHTSHQSGS 83 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd---~--~-I~~~~~~~g~~~i~t~~~~~~GT 83 (268)
|.++|||+-... .++..+++.+......+|||+.|+ . + +.......+. .+.. ..+ .|-
T Consensus 2 VsviIPayNE~~-------------~il~~~l~s~~~~~~~eiivV~D~s~d~~~~~~~~~~~~~~~-~v~~-~~~-~GK 65 (235)
T cd06434 2 VTVIIPVYDEDP-------------DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGI-FVIT-VPH-PGK 65 (235)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCE-EEEE-CCC-CCH
T ss_conf 799995226976-------------899999999980899989999889997289999986348978-9998-898-998
Q ss_pred -HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCC
Q ss_conf -0489999742233452100001522101000001223332101344321111112201100375443146514544420
Q gi|254780765|r 84 -DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGC 162 (268)
Q Consensus 84 -dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~ 162 (268)
..+..+++. .+.++|+.+-+|. .++|+.|.+++..|.+++...++....+.+.. .+..-.
T Consensus 66 ~~Aln~~l~~----a~~d~v~~~DaD~-~~~~~~l~~l~~~f~d~~vg~V~~~~~~~~~~----~~~~~~---------- 126 (235)
T cd06434 66 RRALAEGIRH----VTTDIVVLLDSDT-VWPPNALPEMLKPFEDPKVGGVGTNQRILRPR----DSKWSF---------- 126 (235)
T ss_pred HHHHHHHHHH----CCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC----CCHHHH----------
T ss_conf 9999999997----5778899985885-35888999999964899879997038864699----989999----------
Q ss_pred HHHHHCCCC-CCCCCCCCCCCC----EE-EEEEEHHHHHHHHCCCCC--------CCHHHCCHHH-HHHHHCCCEEEEEE
Q ss_conf 011110357-775311122352----01-355200233333207998--------2111208447-98997896266998
Q gi|254780765|r 163 FRALYFTRT-KTPHGTGPFYQH----LG-IYAYRREALKRFTQLSPS--------VLEQRESLEQ-LRALEARMRIDVKI 227 (268)
Q Consensus 163 ~~alyfsR~-~ip~~~~~~~~h----vG-Iy~f~~~~L~~~~~l~~t--------~lE~~E~lEq-LR~leng~~I~~~~ 227 (268)
..+.++.+. ..-......+.. -| ..+|++++|+++...... +....|+++. +|++.+|+++...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~Rr~~l~~~~~~~~~~~~~~~g~~~~~~ED~~lt~r~~~~G~r~~y~~ 206 (235)
T cd06434 127 LAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999999999999855986896370799999999853301012300027777764269999999998699899924
No 85
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=96.68 E-value=0.017 Score=35.90 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC--C--EEEEECC---C--CCHHHHCCCC---CCCCCCCC
Q ss_conf 56999817767888988500000672266899999996799--8--6999868---3--3000100012---22222222
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI--G--RVIVAVD---D--TKINEIVLQA---GFESVMTH 76 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~--~--~viVaTd---d--~~I~~~~~~~---g~~~i~t~ 76 (268)
.|-++|||+-.. ..|..+++.+..... + +|+|+-| + +.+.+...++ +..+....
T Consensus 2 ~VSViIPa~NE~--------------~~I~~~l~sl~~q~YP~~~~~I~VvDdstD~t~~~~~~~~~~~~~~~~~~~~~~ 67 (232)
T cd06437 2 MVTVQLPVFNEK--------------YVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVR 67 (232)
T ss_pred EEEEEEECCCCH--------------HHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 399999558988--------------999999999996799998089999979996699999999976664199689983
Q ss_pred CCCCCCC--HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 2345652--04899997422334521000015221010000012233321013443211111122011003754431465
Q gi|254780765|r 77 TSHQSGS--DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVV 154 (268)
Q Consensus 77 ~~~~~GT--dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~ 154 (268)
....+|- ..+..+++ ..+.++|+.+-+|. .++|+.+..++..|.+++..++.......+.. .+.+ .
T Consensus 68 ~~~~~g~Ka~aln~gl~----~a~gd~i~~~DaD~-~~~~d~L~~~~~~f~~~~~g~v~~~~~~~n~~----~~~~---~ 135 (232)
T cd06437 68 RADRTGYKAGALAEGMK----VAKGEYVAIFDADF-VPPPDFLQKTPPYFADPKLGFVQTRWGHINAN----YSLL---T 135 (232)
T ss_pred CCCCCCCHHHHHHHHHH----HCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CCHH---H
T ss_conf 69888866999999999----77898899977644-73847999999983199859996664325888----6799---9
Q ss_pred ECCCCCCCHHHHHCC--CCCCCCCCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEECC
Q ss_conf 145444200111103--5777531112235201-3552002333332079982111208447-98997896266998458
Q gi|254780765|r 155 ASPSENGCFRALYFT--RTKTPHGTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQS 230 (268)
Q Consensus 155 ~~~~~~~~~~alyfs--R~~ip~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~~ 230 (268)
.... . ....+|. +... .....+.-..| ..+|++++|++...+.... ..|+.|. +|+..+|+++...+--.
T Consensus 136 ~~~~--~-~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~--~~ED~~l~~r~~~~G~ri~~~~~a~ 209 (232)
T cd06437 136 RVQA--M-SLDYHFTIEQVAR-SSTGLFFNFNGTAGVWRKECIEDAGGWNHDT--LTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred HHHH--H-HHHHHHHHHHHHH-HHCCCCEECCCEEEEEEHHHHHHHCCCCCCC--CCHHHHHHHHHHHCCCEEEEECCCE
T ss_conf 9999--9-9999999999998-8259934126515877599999857998866--1018999999998799899806877
Q ss_pred -CCCCCCCHHHHH
Q ss_conf -888768999999
Q gi|254780765|r 231 -NAMSVDTTNDLE 242 (268)
Q Consensus 231 -~~~~IDt~~Dl~ 242 (268)
....-+|..++-
T Consensus 210 ~~~~~P~t~~~~~ 222 (232)
T cd06437 210 VPAELPASMSAYR 222 (232)
T ss_pred EEEECCCCHHHHH
T ss_conf 9767778999999
No 86
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=96.63 E-value=0.063 Score=32.31 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=94.5
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CC-EEEEECCC--C---C-HHHHCCCCCC---CCCCCCC
Q ss_conf 5699981776788898850000067226689999999679-98-69998683--3---0-0010001222---2222222
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IG-RVIVAVDD--T---K-INEIVLQAGF---ESVMTHT 77 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~-~viVaTdd--~---~-I~~~~~~~g~---~~i~t~~ 77 (268)
+|-++|||+... +.|..+++...... .+ +|+|+.|+ + + +.+++.+++. .++. .
T Consensus 2 ~VSIivP~~nee--------------~~i~~~l~sll~qdYp~~Eiivv~d~s~D~t~~i~~~~~~~~p~~~~~~~~--~ 65 (196)
T cd02520 2 GVSILKPLCGVD--------------PNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLI--G 65 (196)
T ss_pred CEEEEEECCCCC--------------HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE--C
T ss_conf 679999689992--------------779999999996689980899997899997899999987428776659997--6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf 34565204899997422334521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r 78 SHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 78 ~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~ 157 (268)
....|...=..++...-...+.++|+.+-+|. .+.|+.|..++..|.+++..+++..+
T Consensus 66 ~~~~g~~~K~~~l~~g~~~a~gdii~~~DaD~-~~~~~~L~~lv~~f~~p~vg~V~~~~--------------------- 123 (196)
T cd02520 66 GEKVGINPKVNNLIKGYEEARYDILVISDSDI-SVPPDYLRRMVAPLMDPGVGLVTCLC--------------------- 123 (196)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCCEEECCC---------------------
T ss_conf 88878448999999999964589999988997-72955999999985699946796477---------------------
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEECC-CCCCC
Q ss_conf 44420011110357775311122352013552002333332079982111208447-98997896266998458-88876
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQS-NAMSV 235 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~~-~~~~I 235 (268)
. .-+..+|++++|.+...+........|+.+. +|+...|+++...+.-- ....-
T Consensus 124 ------------------~------~G~~~~~Rr~~l~~~Gg~~~~~~~l~ED~~l~~~l~~~G~ri~~~p~a~~~~~~~ 179 (196)
T cd02520 124 ------------------A------FGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGS 179 (196)
T ss_pred ------------------C------CCCEEEEEHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCC
T ss_conf ------------------6------7855678899998749944534541799999999998599799835447850279
Q ss_pred CCHHHHH
Q ss_conf 8999999
Q gi|254780765|r 236 DTTNDLE 242 (268)
Q Consensus 236 Dt~~Dl~ 242 (268)
+|-.++-
T Consensus 180 ~t~~~~~ 186 (196)
T cd02520 180 TSLASFW 186 (196)
T ss_pred CCHHHHH
T ss_conf 8999999
No 87
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase; InterPro: IPR005907 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. The enzyme is active as a homotetramer. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005908 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. ; GO: 0008879 glucose-1-phosphate thymidylyltransferase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.60 E-value=0.029 Score=34.39 Aligned_cols=222 Identities=17% Similarity=0.125 Sum_probs=121.2
Q ss_pred EEEECCCCCCCC-C-----CCEECCCCCCCHHHHHHHHHHHCCCCEEEEEC-CCC-----CHHHHCCCCCCCCCCCCCCC
Q ss_conf 998177678889-8-----85000006722668999999967998699986-833-----00010001222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-P-----KKILADINGLPMILHTAIRARKANIGRVIVAV-DDT-----KINEIVLQAGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p-----~K~L~~i~gkplI~~v~~~a~~s~~~~viVaT-dd~-----~I~~~~~~~g~~~i~t~~~~ 79 (268)
.+|.|-+..+|| | .|-|.+|-.||||.+-......+++-+|.|.| ..+ ++.-.-.++|++.-...+..
T Consensus 2 Gi~laGG~Gtrl~P~t~~~skqllP~ydkPmiyyPl~~lmlaG~r~i~~i~~~~~~~~f~~llGdG~~~G~~~~y~~q~~ 81 (286)
T TIGR01207 2 GIILAGGSGTRLYPITLAVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIISTPEDTPRFKRLLGDGSQFGVELSYAVQPS 81 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCHHCEEEEEECCCC
T ss_conf 26872688740124345443210310157501231899987302220135211000578987135201045788711578
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf 56520489999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r 80 QSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE 159 (268)
Q Consensus 80 ~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~ 159 (268)
..| +++|.-.-......+-.-.+-||.-|.-...-+.+-. ................+|+.+- |+ ..+
T Consensus 82 P~G---la~af~ig~~f~~~~~~~l~lGdn~fyG~~~~~~l~~-~~~~~~Ga~vf~y~v~~P~~yG------v~-~f~-- 148 (286)
T TIGR01207 82 PDG---LAQAFIIGEEFIGDDKSALVLGDNIFYGHDLSELLKR-AAAREEGATVFAYQVKDPERYG------VV-EFD-- 148 (286)
T ss_pred CCH---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCEEEEEEECCCCCCC------EE-EEC--
T ss_conf 632---5888877688726776179960500102148999999-8753068579998750764123------06-663--
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCC-EEEEEEECCCCCCCCC
Q ss_conf 42001111035777531112235201355200233333207998211120844798-997896-2669984588887689
Q gi|254780765|r 160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARM-RIDVKIVQSNAMSVDT 237 (268)
Q Consensus 160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~-~I~~~~~~~~~~~IDt 237 (268)
..++++ |=+..|...+.-|-..|+|.|......--..+++|..-..|=-+..+ .|+.|. .+..+.--.-.++--|
T Consensus 149 -~~~~~~--~~eekP~~P~s~y~v~Gly~yd~~~~~~a~~~~~s~rGelei~~~n~~yl~~G~l~v~~~~rG~aWldtGt 225 (286)
T TIGR01207 149 -EEGRAI--SLEEKPAKPKSNYAVTGLYFYDNRVVEIARELKPSARGELEITDLNRVYLEEGKLSVELLGRGYAWLDTGT 225 (286)
T ss_pred -CCCCEE--EEECCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHCCCCEECCCH
T ss_conf -873178--64137888763413401110106899999731324566402888999998636502014526511000111
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780765|r 238 TNDLEKVRTLIP 249 (268)
Q Consensus 238 ~~Dl~~v~~il~ 249 (268)
.+-|..+-.+++
T Consensus 226 ~~sl~~a~~f~~ 237 (286)
T TIGR01207 226 HDSLLEASSFIE 237 (286)
T ss_pred HHHHHHHHHHHH
T ss_conf 688999999999
No 88
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=96.54 E-value=0.045 Score=33.20 Aligned_cols=204 Identities=20% Similarity=0.169 Sum_probs=94.8
Q ss_pred EEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC----CEEEEEC----CCC-C-HHHHCCCCC-CCCCCCCCC
Q ss_conf 6999817767888988500000672266899999996799----8699986----833-0-001000122-222222223
Q gi|254780765|r 10 VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI----GRVIVAV----DDT-K-INEIVLQAG-FESVMTHTS 78 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~----~~viVaT----dd~-~-I~~~~~~~g-~~~i~t~~~ 78 (268)
|-+|||++-.. ..|..+++....... -+|||+- |+. + +.++..+.. +.++ ..+.
T Consensus 2 VSViIp~yN~~--------------~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D~t~~~~~~~~~~~~~i~~~-~~~~ 66 (249)
T cd02525 2 VSIIIPVRNEE--------------KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLI-DNPK 66 (249)
T ss_pred EEEEECCCCCH--------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEC-CCCC
T ss_conf 89999356978--------------99999999998468999988999998959615699999997407713211-3555
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 45652048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 79 HQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 79 ~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
.| .+.|.+.--...+.++|+.+-+|.- .+|+.+..++..+.+++.+.+............. .. .......
T Consensus 67 --~~---~~~a~N~gi~~a~gd~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~---~~~~~~~ 136 (249)
T cd02525 67 --RI---QSAGLNIGIRNSRGDIIIRVDAHAV-YPKDYILELVEALKRTGADNVGGPMETIGESKFQ-KA---IAVAQSS 136 (249)
T ss_pred --CC---HHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHH-HH---HHHHHHC
T ss_conf --65---8999989899668776884147765-6956999999998778971999888506897277-77---7887626
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 4420011110357775311122352013552002333332079982111208447-98997896266998458-888768
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~~-~~~~ID 236 (268)
.-..+.+.+ |.. .......-+.+-.+|+++++++...+.+. .-..|+.|. +|+...|+++...+--. ....=.
T Consensus 137 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~rr~~~~~iGgfde~-~~~~ED~dl~~R~~~~G~ki~~~p~a~v~h~~~~ 211 (249)
T cd02525 137 PLGSGGSAY--RGG--AVKIGYVDTVHHGAYRREVFEKVGGFDES-LVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRS 211 (249)
T ss_pred CCCCCCCCC--CCC--CCCCCEECCEEEEEEEHHHHHHHCCCCCC-CCCCHHHHHHHHHHHCCCEEEEECCEEEEEECCC
T ss_conf 432352000--132--24584542135798888899973899877-7823899999999976997999188799998999
Q ss_pred CHHHHHH
Q ss_conf 9999999
Q gi|254780765|r 237 TTNDLEK 243 (268)
Q Consensus 237 t~~Dl~~ 243 (268)
|..++.+
T Consensus 212 s~~~~~~ 218 (249)
T cd02525 212 TLKKLAR 218 (249)
T ss_pred CHHHHHH
T ss_conf 9999999
No 89
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.26 E-value=0.047 Score=33.09 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHCC-C-CEEEEECC-----C-CCH-HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 6689999999679-9-86999868-----3-300-010001222222222234565204899997422334521000015
Q gi|254780765|r 36 MILHTAIRARKAN-I-GRVIVAVD-----D-TKI-NEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQ 106 (268)
Q Consensus 36 lI~~v~~~a~~s~-~-~~viVaTd-----d-~~I-~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lq 106 (268)
.|..+++.+...- . .+++|+-| + .+| .++..+..+.++...+ ..|- +.|.+..-...+.++|..+-
T Consensus 14 ~l~~~l~Svl~Qt~~~~EiIiVdDgSs~d~~~~i~~~~~~~~~i~~i~~~~--N~G~---~~a~N~gi~~a~g~yI~~lD 88 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEK--NRGL---GKALNEGLKHCTYDWVARMD 88 (201)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC--CCCH---HHHHHHHHHHCCCCEEEECC
T ss_conf 999999999957999818999989999654399999861479989998788--7898---99977636426766999818
Q ss_pred CCCCCCCCCHHHHHHHHHC-CCCCCCCCCCC-CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCC--CCCCCCCCCCCCC
Q ss_conf 2210100000122333210-13443211111-122011003754431465145444200111103--5777531112235
Q gi|254780765|r 107 ADIPNIEPEILASVLLPLQ-NPIVDIGTLGT-RIHGSTDPDDPNIVKIVVASPSENGCFRALYFT--RTKTPHGTGPFYQ 182 (268)
Q Consensus 107 GD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~-~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfs--R~~ip~~~~~~~~ 182 (268)
+|. +..|+.+..+++.+. +++.+++.... .+. . +.+........... .....+. +.++ -
T Consensus 89 ~DD-~~~p~~l~~~~~~l~~~~~~~~v~~~~~~~~-~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~ 151 (201)
T cd04195 89 TDD-ISLPDRFEKQLDFIEKNPEIDIVGGGVLEFD-S----DGNDIGKRRLPTSH---DDILKFARRRSPF--------N 151 (201)
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCEEEEECCEEEEC-C----CCCEEEEEECCCCH---HHHHHHHHHCCCC--------C
T ss_conf 898-4671699999999987899699980379985-7----89776679778750---5789988743987--------5
Q ss_pred CEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 201355200233333207998211120844-798997896266998
Q gi|254780765|r 183 HLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 183 hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
| +-.+|+++.+.+...++. +...|+.| +||++..|+++..++
T Consensus 152 ~-~~~~~rr~~~~~~Gg~~~--~~~~eD~dl~lRl~~~G~~~~~ip 194 (201)
T cd04195 152 H-PTVMFRKSKVLAVGGYQD--LPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred C-CHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHCCCEEEECC
T ss_conf 7-528999999998489998--896834999999997699399908
No 90
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.20 E-value=0.023 Score=35.00 Aligned_cols=186 Identities=20% Similarity=0.179 Sum_probs=94.6
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC--C--EEEEECC--CCCHHHHCCCCCCCC---CCCCCCC
Q ss_conf 56999817767888988500000672266899999996799--8--6999868--330001000122222---2222234
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI--G--RVIVAVD--DTKINEIVLQAGFES---VMTHTSH 79 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~--~--~viVaTd--d~~I~~~~~~~g~~~---i~t~~~~ 79 (268)
+|-++|||+-.. ..+|..+++.+..... + +|||+-| ++...+.+++++... +...+.
T Consensus 2 ~VsViIPayNE~-------------~~~i~~~l~sl~~q~YP~~~~eIiVvdD~std~t~~~~~~~~~~~~~~~~~~~~- 67 (234)
T cd06421 2 TVDVFIPTYNEP-------------LEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPD- 67 (234)
T ss_pred EEEEEEECCCCC-------------HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCC-
T ss_conf 399999838997-------------899999999999679999828999998989878898888845664368887488-
Q ss_pred CCCC--HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCHHHCCCCCCCEEEEEC
Q ss_conf 5652--0489999742233452100001522101000001223332101-344321111112201100375443146514
Q gi|254780765|r 80 QSGS--DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN-PIVDIGTLGTRIHGSTDPDDPNIVKIVVAS 156 (268)
Q Consensus 80 ~~GT--dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~-~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~ 156 (268)
..|. ..+..++.. ...|+|+.+-+|. +.+|+.+.+++..|.+ +...++.......+.. .......
T Consensus 68 ~~g~Ka~alN~g~~~----a~gd~v~~~DaD~-~~~~~~L~~~~~~~~~~~~v~~v~~~~~~~~~~------~~~~~~~- 135 (234)
T cd06421 68 NRHAKAGNLNNALAH----TTGDFVAILDADH-VPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPD------PFDWLAD- 135 (234)
T ss_pred CCCCHHHHHHHHHHH----CCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCEEEEECCEEEECCC------CCCHHHH-
T ss_conf 999769999999997----7899999988987-708769999999998699758995356773488------3328999-
Q ss_pred CCCCCCHHHHHCCCCCCCC---CCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 5444200111103577753---1112235201-355200233333207998211120844-798997896266998
Q gi|254780765|r 157 PSENGCFRALYFTRTKTPH---GTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 157 ~~~~~~~~alyfsR~~ip~---~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
. ......+|.+..-+. ....++ .| -.+|++++|++...++... ..|+.| .+|+...|+++...+
T Consensus 136 ~---~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~rr~~l~~vGgf~~~~--~~ED~dl~~rl~~~G~k~~y~p 204 (234)
T cd06421 136 G---APNEQELFYGVIQPGRDRWGAAFC--CGSGAVVRREALDEIGGFPTDS--VTEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred H---HHHHHHHHHHHHHHHHHCCCCEEE--CCCHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHCCCEEEEEC
T ss_conf 9---999999999999988733884255--3550678899999818999999--7659999999997699799936
No 91
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.99 E-value=0.11 Score=30.89 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=99.7
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC--C--EEEEECC--CCCHHHHCCCCCC----CCCCCCCC
Q ss_conf 56999817767888988500000672266899999996799--8--6999868--3300010001222----22222223
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI--G--RVIVAVD--DTKINEIVLQAGF----ESVMTHTS 78 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~--~--~viVaTd--d~~I~~~~~~~g~----~~i~t~~~ 78 (268)
.+.++|||+-.+ ..|..+++.+..... + +|+|+-| +..-.+.+++.+. .++. .++
T Consensus 2 ~vsViIPa~NE~--------------~vI~~ti~sl~~~~YP~~~~evivv~d~s~~~t~~~~~~~~~~~~~~~~~-~~~ 66 (241)
T cd06427 2 VYTILVPLYKEA--------------EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVV-VPP 66 (241)
T ss_pred EEEEEEECCCCH--------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEE-ECC
T ss_conf 499999668988--------------99999999999679997617999998899968999999857876708999-638
Q ss_pred CCCCC--HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC--CCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 45652--048999974223345210000152210100000122333210134432--11111122011003754431465
Q gi|254780765|r 79 HQSGS--DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDI--GTLGTRIHGSTDPDDPNIVKIVV 154 (268)
Q Consensus 79 ~~~GT--dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv--~tl~~~~~~~~~~~d~n~vKvi~ 154 (268)
...++ ..+..|+.. .+.|+|+.+-+|. .++|+.+..++..|...+..+ +.......++. .|.+....
T Consensus 67 ~~~~gK~~alN~al~~----a~gd~v~~~DAD~-~~~p~~L~~~v~~f~~~~~~v~~v~~~~~~~n~~----~~~~~~~~ 137 (241)
T cd06427 67 SQPRTKPKACNYALAF----ARGEYVVIYDAED-APDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR----ENWLTRMF 137 (241)
T ss_pred CCCCCHHHHHHHHHHH----CCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEEEECEEEECCCC----CCHHHHHH
T ss_conf 9887469999999996----1588599978655-6497799999999985798557773316745899----98899988
Q ss_pred ECCCCCCCHHHHHCCCCCCCC--CCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEEECC
Q ss_conf 145444200111103577753--1112235201-355200233333207998211120844-798997896266998458
Q gi|254780765|r 155 ASPSENGCFRALYFTRTKTPH--GTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKIVQS 230 (268)
Q Consensus 155 ~~~~~~~~~~alyfsR~~ip~--~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~~~~ 230 (268)
.. ....+|.- ..+. ..+...---| --+|++++|++...+.+.. ..|++| .+|++.+|++|..+....
T Consensus 138 ~~------e~~~~~~~-~~~~~~~~~~~~~~~G~~~~~Rr~~l~~vGg~~~~~--~tED~dl~~rl~~~G~ri~~~~~~~ 208 (241)
T cd06427 138 AL------EYAAWFDY-LLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDPFN--VTEDADLGLRLARAGYRTGVLNSTT 208 (241)
T ss_pred HH------HHHHHHHH-HHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHCCCEEEECCCCE
T ss_conf 99------99999999-999999669934338726877999999809998876--4647999999998699498537544
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 888768999999999
Q gi|254780765|r 231 NAMSVDTTNDLEKVR 245 (268)
Q Consensus 231 ~~~~IDt~~Dl~~v~ 245 (268)
-...-.|..++.+=+
T Consensus 209 ~~e~P~t~~~~~~QR 223 (241)
T cd06427 209 LEEANNALGNWIRQR 223 (241)
T ss_pred ECCCCCCHHHHHHHH
T ss_conf 234787999999999
No 92
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.83 E-value=0.034 Score=33.97 Aligned_cols=198 Identities=19% Similarity=0.192 Sum_probs=105.5
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-C-C-EEEEECCC--CCHHHHCCCCC--------CCCCC
Q ss_conf 65699981776788898850000067226689999999679-9-8-69998683--30001000122--------22222
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-I-G-RVIVAVDD--TKINEIVLQAG--------FESVM 74 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~-~-~viVaTdd--~~I~~~~~~~g--------~~~i~ 74 (268)
..|-++||||-...+ |.++.+...... . + +|+|+-|+ +.-.+.++..+ ..++
T Consensus 40 P~VSViIPARNEe~~--------------I~~~L~Sl~~Q~yp~~~EvivvDD~StD~T~~i~~~~~~~~~~~~rl~vi- 104 (384)
T TIGR03469 40 PAVVAVVPARNEADV--------------IGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV- 104 (384)
T ss_pred CCEEEEECCCCCHHH--------------HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-
T ss_conf 976999768987888--------------99999999837899975999995699863999999997446888638982-
Q ss_pred CCCCCC---CCC-HHHHHHHHHHC-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 222345---652-04899997422-3345210000152210100000122333210134432111111220110037544
Q gi|254780765|r 75 THTSHQ---SGS-DRIFEALNIID-SDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNI 149 (268)
Q Consensus 75 t~~~~~---~GT-dRi~ea~~~l~-~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~ 149 (268)
+.+... .|- -.|+.+++... .....|+++.+-+|.- ..|+.|.+++..+.+...+.+++.-...-....+.
T Consensus 105 ~~~~lP~gW~GK~~A~~qg~~~A~~~~~~ge~llF~DADv~-~~p~~l~~~v~~~~~~~~~lvS~~p~~~~~~~~e~--- 180 (384)
T TIGR03469 105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAEGLDLVSLMVRLRCESFWEK--- 180 (384)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHCCCCEEECCCCEECCCHHHH---
T ss_conf 58989987651188999999998525787757999457500-08769999999999759984733354036978999---
Q ss_pred CEEEEECCCCCCCHHHHH-CCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEE
Q ss_conf 314651454442001111-03577753111223520135520023333320799821112084479899-7896266998
Q gi|254780765|r 150 VKIVVASPSENGCFRALY-FTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKI 227 (268)
Q Consensus 150 vKvi~~~~~~~~~~~aly-fsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~ 227 (268)
.+.. ........++ +.+..-|.. ....-.-+..+|+++.+++......-..+..|+++.-|.+ ++|+++.+..
T Consensus 181 --l~~p--~~~~~~~~~~p~~~~~~~~~-~~~~a~G~~~l~rR~ay~~iGGh~av~~~v~DD~~Lar~ik~~G~~v~~~~ 255 (384)
T TIGR03469 181 --LLIP--AFVFFFQKLYPFRWVNDPRR-RTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred --HHHH--HHHHHHHHHCCHHHHCCCCC-CCHHCCCCEEEEEHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf --9999--99999999664887539653-300115865897899998748888883373328999999997599289862
Q ss_pred EC
Q ss_conf 45
Q gi|254780765|r 228 VQ 229 (268)
Q Consensus 228 ~~ 229 (268)
..
T Consensus 256 g~ 257 (384)
T TIGR03469 256 AA 257 (384)
T ss_pred CC
T ss_conf 65
No 93
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.47 E-value=0.18 Score=29.46 Aligned_cols=193 Identities=19% Similarity=0.160 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHCC-C-CEEEEECC----CC---CHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCEEEE
Q ss_conf 6689999999679-9-86999868----33---000100012222222222345652--048999974223345210000
Q gi|254780765|r 36 MILHTAIRARKAN-I-GRVIVAVD----DT---KINEIVLQAGFESVMTHTSHQSGS--DRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 36 lI~~v~~~a~~s~-~-~~viVaTd----d~---~I~~~~~~~g~~~i~t~~~~~~GT--dRi~ea~~~l~~~~~~d~vV~ 104 (268)
+|..+++.+.... . .+|+|+-| +. .+.+++.+.+..+....-....|. ..+..+++... .++++|+.
T Consensus 13 vi~~~l~sl~~~~Yp~~eIiVvdd~stD~t~~~~v~~~~~~~~~~~~~~~~~~~~g~K~~alN~~l~~~~--~~~e~i~~ 90 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA--PDAEIIAV 90 (236)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEE
T ss_conf 9999999999579999879999892998158999999998729967999948889970999999999647--98549999
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCC--CCCCCCC
Q ss_conf 15221010000012233321013443211111122011003754431465145444200111103577753--1112235
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPH--GTGPFYQ 182 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~--~~~~~~~ 182 (268)
+-+|. .++|+.|..++..|.+++..++.......+.. .+.+.-.... .....| ....+. ......-
T Consensus 91 ~DaD~-~~~pd~L~~~v~~f~~p~vg~v~~~~~~~~~~----~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~ 158 (236)
T cd06435 91 IDADY-QVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE----ESLFKRMCYA------EYKGFF-DIGMVSRNERNAIIQ 158 (236)
T ss_pred ECCCC-CCCHHHHHHHHHHHCCCCEEEEECCEECCCCC----CCHHHHHHHH------HHHHHH-HHHHHHHHCCCCEEE
T ss_conf 76887-77868999999860498768995561314877----6799999999------999999-988988853897476
Q ss_pred CEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEEECC-CCCCCCCHHHHHHH
Q ss_conf 201355200233333207998211120844-798997896266998458-88876899999999
Q gi|254780765|r 183 HLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKIVQS-NAMSVDTTNDLEKV 244 (268)
Q Consensus 183 hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~~~~-~~~~IDt~~Dl~~v 244 (268)
+-...+|++++|++...+....+ .|+.| .+|++.+|+++...+--. ....-+|-.++-+=
T Consensus 159 ~G~~~~~Rr~~l~~iGgf~~~~~--~ED~dl~~rl~~~G~~~~y~p~a~~~~~~p~t~~~~~~Q 220 (236)
T cd06435 159 HGTMCLIRRSALDDVGGWDEWCI--TEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQ 220 (236)
T ss_pred CCEEEEEEHHHHHHHCCCCCCCC--CCHHHHHHHHHHCCCEEEECCCCEEEEECCCCHHHHHHH
T ss_conf 66468878899998389887775--777999999998599799725777986577889999999
No 94
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=95.35 E-value=0.065 Score=32.21 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred EEEEEC----CCC-C-HHHHCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 699986----833-0-001000122--22222222345652048999974223345210000152210100000122333
Q gi|254780765|r 51 RVIVAV----DDT-K-INEIVLQAG--FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLL 122 (268)
Q Consensus 51 ~viVaT----dd~-~-I~~~~~~~g--~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~ 122 (268)
+|+|+- |+. + +.+++.++. +.++...++..-|. .+..++... ..++|+.+-||.. .+|++|.++++
T Consensus 32 eIivVddgS~D~T~~i~~~~~~~~~~~~~vi~~~~n~G~g~-A~~~G~~~a----~~d~i~~~DaD~~-~~~~~i~~l~~ 105 (211)
T cd04188 32 EIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGG-AVRAGMLAA----RGDYILFADADLA-TPFEELEKLEE 105 (211)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHH----HCCEEEEECCCCC-CHHHHHHHHHH
T ss_conf 89999899971879999999741786599996588888048-999999960----0485567768974-07889999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCC
Q ss_conf 2101344321111112201100375443146514544420011110357775311122352013552002333332-079
Q gi|254780765|r 123 PLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLS 201 (268)
Q Consensus 123 ~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~ 201 (268)
.+...++|++...............+..+.+.+.- .+...+. +....+. --+.|.-+|++++|++.. .+.
T Consensus 106 ~~~~~~~d~V~GsR~~~~~~~~~~~~~~r~~~s~~-~~~~~~~--l~~~~i~------D~~~gfr~~~~~~l~~i~~~~~ 176 (211)
T cd04188 106 ALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRG-FNFLVRL--LLGLGIK------DTQCGFKLFTRDAARRLFPRLH 176 (211)
T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHH--HHCCCCC------CCCCCEEEEEHHHHHHHHHHCC
T ss_conf 99848981999975567998633563889999999-9999999--8389878------8886746577999999875564
Q ss_pred CCCCHHHCCHHH-HHHHHCCCEEEEEEECC
Q ss_conf 982111208447-98997896266998458
Q gi|254780765|r 202 PSVLEQRESLEQ-LRALEARMRIDVKIVQS 230 (268)
Q Consensus 202 ~t~lE~~E~lEq-LR~leng~~I~~~~~~~ 230 (268)
.. .-..++|+ +++..+|++|.-+++..
T Consensus 177 ~~--~f~~~~El~~~~~~~g~ki~EvPi~~ 204 (211)
T cd04188 177 LE--RWAFDVELLVLARRLGYPIEEVPVRW 204 (211)
T ss_pred CC--CCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 68--85015999999998699199990089
No 95
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.17 E-value=0.086 Score=31.46 Aligned_cols=188 Identities=21% Similarity=0.227 Sum_probs=91.6
Q ss_pred EEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHC--CCC-EEEEEC----CC-CCHHH-HCCCC-CCCCCCCCCCCCC
Q ss_conf 998177678889885000006722668999999967--998-699986----83-30001-00012-2222222223456
Q gi|254780765|r 12 VIIPARLNSMRFPKKILADINGLPMILHTAIRARKA--NIG-RVIVAV----DD-TKINE-IVLQA-GFESVMTHTSHQS 81 (268)
Q Consensus 12 ~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s--~~~-~viVaT----dd-~~I~~-~~~~~-g~~~i~t~~~~~~ 81 (268)
+||||--...+ |..++++..+. +.+ +|+|+- |+ .++++ .++++ ++.++.... ..
T Consensus 1 IIIP~yNEe~~--------------i~~~l~~i~~~~~~~~~eIIvVdDgStD~T~~i~~~l~~~~~~~~~i~~~~--n~ 64 (224)
T cd06442 1 IIIPTYNEREN--------------IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPG--KR 64 (224)
T ss_pred EEEEECCCHHH--------------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCC--CC
T ss_conf 39995487888--------------999999999860689949999989697371788865422477247863366--78
Q ss_pred CCH-HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCC
Q ss_conf 520-4899997422334521000015221010000012233321013443211111122011003754431465145444
Q gi|254780765|r 82 GSD-RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSEN 160 (268)
Q Consensus 82 GTd-Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~ 160 (268)
|-. .+..+++.. ..++|+.+-||.. .+|++|.++++.+.+.++|++.. ++........+.+..+.+.+.-
T Consensus 65 G~g~Ai~~G~~~a----~~~~i~~~DaD~q-~~p~~i~~li~~~~~~~~d~V~G-sR~~~~~~~~~~~~~r~~~s~~--- 135 (224)
T cd06442 65 GLGSAYIEGFKAA----RGDVIVVMDADLS-HPPEYIPELLEAQLEGGADLVIG-SRYVEGGGVEGWGLKRKLISRG--- 135 (224)
T ss_pred CHHHHHHHHHHHH----CCCCEEEECCCCC-CCHHHHHHHHHHHHCCCCCEEEE-EEECCCCCCCCCHHHHHHHHHH---
T ss_conf 7279999999860----1784688659997-62777899999987188724798-8762798635770666788888---
Q ss_pred CCHHHHHCCCCCCCCCCCCCC-CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEECCCC
Q ss_conf 200111103577753111223-52013552002333332079982111208447-9899789626699845888
Q gi|254780765|r 161 GCFRALYFTRTKTPHGTGPFY-QHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 161 ~~~~alyfsR~~ip~~~~~~~-~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~~~~ 232 (268)
+-.+.+-. +.. ++. -+.|.-+|++++++++.....+. --.-..|+ +++...|++|.-+++.+..
T Consensus 136 ----~~~i~~~l--~~~-~i~D~~~gfr~~~~~~~~~i~~~~~~~-~f~~~~ei~~~~~~~~~ki~evpv~~~~ 201 (224)
T cd06442 136 ----ANLLARLL--LGR-KVSDPTSGFRAYRREVLEKLIDSLVSK-GYKFQLELLVRARRLGYRIVEVPITFVD 201 (224)
T ss_pred ----HHHHHHHC--CCC-EECCCCCCEEEEEHHHHHHHHHHCCCC-CCCCHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf ----88763230--584-243179963998899999887754566-6301899999999889989999727779
No 96
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.70 E-value=0.38 Score=27.46 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHCC-C-CEEEEE----CCCCCHHHHCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 67226689999999679-9-869998----683300010001222222--222234565204899997422334521000
Q gi|254780765|r 32 NGLPMILHTAIRARKAN-I-GRVIVA----VDDTKINEIVLQAGFESV--MTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~-~-~~viVa----Tdd~~I~~~~~~~g~~~i--~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
++...|..+++.+.+.. . -+|+|+ ||+. .+.++++.-..+ .+.+ ..| ++.|.+..-.....++|+
T Consensus 8 N~~~~l~~~l~Si~~Q~~~~~EiIvVDd~S~D~t--~~~~~~~~~~~~~~~~~~--~~G---~~~a~N~g~~~a~g~yi~ 80 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGT--VDIIKKYEDKITYWISEP--DKG---IYDAMNKGIALATGDIIG 80 (202)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH--HHHHHHCCCCEEEEEECC--CCC---HHHHHHHHHHHCCCCEEE
T ss_conf 9889999999999837899979999979988423--445331134125999888--888---899987327754855532
Q ss_pred ECCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 015221010000012233321-0134432111111220110037544314651454442001111035777531112235
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPL-QNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQ 182 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~-~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~ 182 (268)
.+-+|.-+ .|+.+...+..+ .+++.+++..-....+. .. ......... ......+..+..++
T Consensus 81 ~ld~DD~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~-~~~~~~~~~--~~~~~~~~~~~~~~-------- 143 (202)
T cd06433 81 FLNSDDTL-LPGALLAVVAAFAEHPEVDVVYGDVLLVDE-----NG-RVIGRRRPP--PFLDKFLLYGMPIC-------- 143 (202)
T ss_pred CCCCCCEE-CCHHHHHHHHHHHHCCCCCEEECCEEEECC-----CC-CEEEEECCC--CCCHHHHHCCCCCC--------
T ss_conf 24888626-844999999999878994099934699869-----99-687542266--53678885468866--------
Q ss_pred CEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 201355200233333207998211120844-798997896266998
Q gi|254780765|r 183 HLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 183 hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
|-| ..|+++.+++...+.+. +-..|+.| ++|+..+|+++..++
T Consensus 144 ~~~-~~~r~~~~~~ig~fd~~-~~~~eD~d~~~R~~~~g~~i~~ip 187 (202)
T cd06433 144 HQA-TFFRRSLFEKYGGFDES-YRIAADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred CCC-EEEEEEEHHHHCCCCCC-CCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 651-35640304550898867-680229999999998399399848
No 97
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.30 E-value=0.46 Score=26.90 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHCC-CC-EEEEECC---CCCHHHHCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 26689999999679-98-6999868---33000100012-----222222222345652048999974223345210000
Q gi|254780765|r 35 PMILHTAIRARKAN-IG-RVIVAVD---DTKINEIVLQA-----GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 35 plI~~v~~~a~~s~-~~-~viVaTd---d~~I~~~~~~~-----g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
..|..+++.+.... .+ +|+|+-| |....+.++.+ .+.++. .+. ..| ++.|.+..-...+.++|+.
T Consensus 15 ~~l~~~l~Si~~Qt~~~~EiIvvDd~StD~~~~~~~~~~~~~~~~i~~~~-~~~-n~G---~~~a~N~gi~~a~geyi~f 89 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVF-REE-NGG---ISAATNSALELATGEFVAL 89 (202)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCC-CCC---HHHHHHHHHHCCCCCEEEE
T ss_conf 99999999998378998799999899894789999999885188520012-678-878---9999886451368766773
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCC--CCCCCCC
Q ss_conf 152210100000122333210-1344321111112201100375443146514544420011110357775--3111223
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTP--HGTGPFY 181 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip--~~~~~~~ 181 (268)
+-+|. .+.|+.+..+++.+. +++.+++. +. ...+. .+.... ..+|....-+ ....++.
T Consensus 90 lD~DD-~~~p~~l~~~~~~~~~~~~~~~v~--~~---~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~ 150 (202)
T cd04184 90 LDHDD-ELAPHALYEVVKALNEHPDADLIY--SD---EDKID-EGGKRS------------EPFFKPDWSPDLLLSQNYI 150 (202)
T ss_pred CCCCC-EECHHHHHHHHHHHHHCCCCCEEE--CC---HHEEC-CCCCEE------------ECCCCCCCCHHHHHHCCCC
T ss_conf 27785-528439999999998689935997--37---11686-799787------------2124787798898534763
Q ss_pred CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 5201355200233333207998211120844-798997896266998
Q gi|254780765|r 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 182 ~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
.| ...|+++.+.+...+.+. +...|+.| ++|++.+|++|..++
T Consensus 151 ~~--~~~~rr~~~~~iGgfde~-~~~~eD~dl~lRl~~~g~ki~~ip 194 (202)
T cd04184 151 GH--LLVYRRSLVRQVGGFREG-FEGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred CH--HHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf 20--366689999995898988-883169999999998199799928
No 98
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=94.10 E-value=0.15 Score=29.92 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=49.7
Q ss_pred HHHHHHC--CC-CEEEEE-CCC-CCHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9999967--99-869998-683-3000100012222222222345652-0489999742233452100001522101000
Q gi|254780765|r 41 AIRARKA--NI-GRVIVA-VDD-TKINEIVLQAGFESVMTHTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEP 114 (268)
Q Consensus 41 ~~~a~~s--~~-~~viVa-Tdd-~~I~~~~~~~g~~~i~t~~~~~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~ 114 (268)
+.+|+.| .+ |+|+|+ +++ +.-.++|+++|++++-. .. .|- ..-..|+.. ...|.|..|-+||- +++
T Consensus 15 l~~~l~sl~~~~deiivvDs~StD~T~~ia~~~~~~v~~~--~~-~~~~~qrn~a~~~----a~~dWil~lDADE~-~~~ 86 (229)
T cd02511 15 IERCLESVKWAVDEIIVVDSGSTDRTVEIAKEYGAKVYQR--WW-DGFGAQRNFALEL----ATNDWVLSLDADER-LTP 86 (229)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEC--CC-CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCH
T ss_conf 9999998764398899995979875299999849908954--77-8879999999983----89988999711012-799
Q ss_pred CHHHHHHHHHCCCCCC
Q ss_conf 0012233321013443
Q gi|254780765|r 115 EILASVLLPLQNPIVD 130 (268)
Q Consensus 115 ~~Id~~i~~~~~~~~d 130 (268)
+....+...+.+++.+
T Consensus 87 ~l~~ei~~~~~~~~~~ 102 (229)
T cd02511 87 ELADEILALLATDDYD 102 (229)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999997289975
No 99
>PRK11204 N-glycosyltransferase PgaC; Provisional
Probab=93.73 E-value=0.47 Score=26.85 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHCC-CC-EEEEECCC--CCHHHHCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 67226689999999679-98-69998683--30001000122-----222222223456520489999742233452100
Q gi|254780765|r 32 NGLPMILHTAIRARKAN-IG-RVIVAVDD--TKINEIVLQAG-----FESVMTHTSHQSGSDRIFEALNIIDSDKKSQII 102 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~-~~-~viVaTdd--~~I~~~~~~~g-----~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~v 102 (268)
+....|..+++.+.... .+ +|+|+.|+ +.-.+.+++++ +.++-.. ...|= +.|++.--...+.|+|
T Consensus 64 NEe~~I~~tI~sll~~~YP~~eIiVVdDgStD~T~~i~~~~~~~~p~~~vi~~~--~n~GK---a~ALN~gl~~a~ge~V 138 (421)
T PRK11204 64 NEGENVEETISAALALRYPNYEVIAINDGSSDNTGEILDRLAAEDPRLRVIHLA--ENQGK---AIALNTGAAAARSEYL 138 (421)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECC--CCCCH---HHHHHHHHHHCCCCEE
T ss_conf 978999999999995899986699998999740899999997068968999769--99889---9999999984378989
Q ss_pred EECCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCC-------CCCCC
Q ss_conf 0015221010000012233321-013443211111122011003754431465145444200111103-------57775
Q gi|254780765|r 103 VNMQADIPNIEPEILASVLLPL-QNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFT-------RTKTP 174 (268)
Q Consensus 103 V~lqGD~Pli~~~~Id~~i~~~-~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfs-------R~~ip 174 (268)
+.+-||. ..+|+.+..++..| .+++...++......+ ++ ..+.. ..+..|+ |+.--
T Consensus 139 v~~DAD~-~~~~d~L~~~v~~f~~dp~VgaV~g~~~v~n------~~--tlL~r-------~q~~Ey~~~~~~~kr~q~~ 202 (421)
T PRK11204 139 VCIDGDA-LLDPDAAAYMVEHFLHNPRVGAVTGNPRIRN------RS--TLLGR-------IQVGEFSSIIGLIKRAQRV 202 (421)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHHCCCCEEEECCCEEEC------CC--CHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf 9989987-1486799999999971986438837854304------33--38887-------5799999999999999998
Q ss_pred CCCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 31112235201-355200233333207998211120844-79899789626699845888876899999999
Q gi|254780765|r 175 HGTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKIVQSNAMSVDTTNDLEKV 244 (268)
Q Consensus 175 ~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v 244 (268)
+ +..+---| ..+|++++|.+...+.... ..|++| .+|+...|+++...+ .-..-.+.|+++...
T Consensus 203 ~--g~~~~vsG~~~~fRrsaL~~vGGw~~~t--ltED~dls~rl~~~G~ri~y~p--~A~~~~e~P~Tl~~l 268 (421)
T PRK11204 203 Y--GRVFTVSGVITAFRKSALADVGYWSTDM--ITEDIDISWKLQLRGWDIRYEP--RALCWILMPETLRGL 268 (421)
T ss_pred H--CCCEEECCEEEEEHHHHHHHHCCCCCCC--HHHHHHHHHHHHHCCCEEEECC--CCEEEEECHHHHHHH
T ss_conf 3--8814527721220499999828979985--2247999999998799699536--577972174329999
No 100
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.10 E-value=0.75 Score=25.58 Aligned_cols=209 Identities=23% Similarity=0.239 Sum_probs=101.6
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC-C-EEEEECC--CCCHHHHCCCCCCCC----CCCCC-C
Q ss_conf 656999817767888988500000672266899999996799-8-6999868--330001000122222----22222-3
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI-G-RVIVAVD--DTKINEIVLQAGFES----VMTHT-S 78 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~-~-~viVaTd--d~~I~~~~~~~g~~~----i~t~~-~ 78 (268)
.++.++|||+...-+ .++.+++.+..... . +|+|+-| +++..+.+++.+.+. ....+ .
T Consensus 54 p~vsviiP~ynE~~~-------------~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (439)
T COG1215 54 PKVSVIIPAYNEEPE-------------VLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEK 120 (439)
T ss_pred CCEEEEEECCCCCHH-------------HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 726999836999867-------------8999999998278987159999689983099999999744378579996244
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CHHHCCCCCCCEEEEECC
Q ss_conf 4565204899997422334521000015221010000012233321013443211111122-011003754431465145
Q gi|254780765|r 79 HQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIH-GSTDPDDPNIVKIVVASP 157 (268)
Q Consensus 79 ~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~-~~~~~~d~n~vKvi~~~~ 157 (268)
...|- +.|+..--...++|+|+.+-+|.. ..|+.+.+++..|.++... +....+.. +..... ....++..
T Consensus 121 ~~~gK---~~al~~~l~~~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~~~-~v~~~~~~~~~~~~~-~~l~~~~~--- 191 (439)
T COG1215 121 KNGGK---AGALNNGLKRAKGDVVVILDADTV-PEPDALRELVSPFEDPPVG-AVVGTPRIRNRPDPS-NLLGRIQA--- 191 (439)
T ss_pred CCCCH---HHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHHCCCCEE-EEEECCEECCCCCCH-HHHHHHHH---
T ss_conf 55524---899998875057888999838877-8711999999973258804-999556321455630-17788999---
Q ss_pred CCCCCHHHHHCCCCCCCCCCC-CCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEEC-CCCCC
Q ss_conf 444200111103577753111-22352013552002333332079982111208447-9899789626699845-88887
Q gi|254780765|r 158 SENGCFRALYFTRTKTPHGTG-PFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQ-SNAMS 234 (268)
Q Consensus 158 ~~~~~~~alyfsR~~ip~~~~-~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~-~~~~~ 234 (268)
.......+.+..-....+ ...-.-+..+|++++|++-..+.+.. ..|+.+. +|....|+++..+.-. .....
T Consensus 192 ---~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~--i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~ 266 (439)
T COG1215 192 ---IEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLEDT--ITEDADLTLRLHLRGYRVVYVPEAIVWTEA 266 (439)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEECCCCHHEEEHHHHHHHCCCCCCE--EECCHHHHHHHHHCCCEEEEECCCEEECCC
T ss_conf ---999999988899998589746526721303399999827857754--541599999999889889994574573558
Q ss_pred CCCHHHHHH
Q ss_conf 689999999
Q gi|254780765|r 235 VDTTNDLEK 243 (268)
Q Consensus 235 IDt~~Dl~~ 243 (268)
.+|..++-.
T Consensus 267 p~t~~~~~~ 275 (439)
T COG1215 267 PETLKELWR 275 (439)
T ss_pred CCCHHHHHH
T ss_conf 886899999
No 101
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=93.02 E-value=0.55 Score=26.41 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHCCC--C--EEEEECCC--CCHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCC-CCCCCEEEEC
Q ss_conf 2266899999996799--8--69998683--3000100012222222222345652-048999974223-3452100001
Q gi|254780765|r 34 LPMILHTAIRARKANI--G--RVIVAVDD--TKINEIVLQAGFESVMTHTSHQSGS-DRIFEALNIIDS-DKKSQIIVNM 105 (268)
Q Consensus 34 kplI~~v~~~a~~s~~--~--~viVaTdd--~~I~~~~~~~g~~~i~t~~~~~~GT-dRi~ea~~~l~~-~~~~d~vV~l 105 (268)
...|..+++++..... + +|+|+.|+ +.-.+.+++.|..++........|- ..+..++..+.. ..++++|+.+
T Consensus 9 e~vI~~ti~~l~~~~YP~~~~eIivvdD~stD~T~~~a~~~~~~v~~~~~~~~~gK~~aln~~~~~~~~~~~~~d~v~i~ 88 (183)
T cd06438 9 EAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVF 88 (183)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999999836899785699998489862089999983996999737777762889998899984247886689995
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 522101000001223332101344321
Q gi|254780765|r 106 QADIPNIEPEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 106 qGD~Pli~~~~Id~~i~~~~~~~~dv~ 132 (268)
-+|. ..+|+.+.++...|.+ +.+++
T Consensus 89 DAD~-~~~~d~l~~~~~~f~~-~~~~V 113 (183)
T cd06438 89 DADN-LVDPNALEELNARFAA-GARVV 113 (183)
T ss_pred CCCC-CCCHHHHHHHHHHHHC-CCCEE
T ss_conf 5666-7797899999999838-99679
No 102
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.84 E-value=0.82 Score=25.35 Aligned_cols=143 Identities=17% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHC-CC-CEEEEECC--CCCHHHHCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 722668999999967-99-86999868--330001000122--2222222234565204899997422334521000015
Q gi|254780765|r 33 GLPMILHTAIRARKA-NI-GRVIVAVD--DTKINEIVLQAG--FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQ 106 (268)
Q Consensus 33 gkplI~~v~~~a~~s-~~-~~viVaTd--d~~I~~~~~~~g--~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lq 106 (268)
....|..+++...+. .. .+|+|+-| .+.-.+.++++. ++++... ...|- +.|.+..-...+.++++.+.
T Consensus 8 ~~~~l~~~l~Sl~~q~~~~~eiivVD~~S~d~t~~~~~~~~~~i~~i~~~--~n~G~---~~a~N~g~~~a~g~~i~~lD 82 (166)
T cd04186 8 SLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG--ENLGF---GAGNNQGIREAKGDYVLLLN 82 (166)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEECC--CCCCH---HHHHHHHHHHHCCCCEEEEC
T ss_conf 88999999999983779980999996899831567777428988999898--98776---78761689871657269987
Q ss_pred CCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEE
Q ss_conf 22101000001223332101-34432111111220110037544314651454442001111035777531112235201
Q gi|254780765|r 107 ADIPNIEPEILASVLLPLQN-PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLG 185 (268)
Q Consensus 107 GD~Pli~~~~Id~~i~~~~~-~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvG 185 (268)
.|. .+.|+.+..++..+.+ ++..++.+. + . -+
T Consensus 83 ~D~-~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~---------~---------------------g~ 115 (166)
T cd04186 83 PDT-VVEPGALLELLDAAEQDPDVGIVGPK----------------V---------S---------------------GA 115 (166)
T ss_pred CCE-EECCCHHHHHHHHHHHCCCEEEEEEC----------------C---------C---------------------EE
T ss_conf 993-88839999999999869798999950----------------5---------4---------------------89
Q ss_pred EEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 355200233333207998211120844-798997896266998
Q gi|254780765|r 186 IYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 186 Iy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
..+|+++.+++...+.+.-.--.|+.| .+|+...|++|..++
T Consensus 116 ~~~~rr~~~~~vGgfde~~~~~~ED~dl~~R~~~~G~~i~~~p 158 (166)
T cd04186 116 FLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred EEEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999999858997686574659999999998299499949
No 103
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=91.74 E-value=0.83 Score=25.30 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCC-EEEEE----CCC--CCHHHHCCCCC--CCCCC
Q ss_conf 75556569998177678889885000006722668999999967998-69998----683--30001000122--22222
Q gi|254780765|r 4 QHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIG-RVIVA----VDD--TKINEIVLQAG--FESVM 74 (268)
Q Consensus 4 ~~~~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~-~viVa----Tdd--~~I~~~~~~~g--~~~i~ 74 (268)
-|.|+|+-+|||+--...-+| ++++++.......+.+ +++++ ||+ +.+.+.++..+ +..+.
T Consensus 2 ~~pmkkiSIViP~yNEe~~i~----------~~~~~~~~~l~~~~~~~EiI~VDDgS~D~T~~~l~~l~~~~~~~v~~i~ 71 (324)
T PRK10714 2 IHPIKKVSVVIPVYNEQESLP----------ELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEASQAEDSHIISIL 71 (324)
T ss_pred CCCCCEEEEEEECCCCHHHHH----------HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 999986999980177787799----------9999999999867999899999899986779999998630599689998
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 22234565204899997422334521000015221010000012233321013443211111122011003754431465
Q gi|254780765|r 75 THTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVV 154 (268)
Q Consensus 75 t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~ 154 (268)
-+.++..+. .+..++.. ...|+||.+.+|. -=+|+.|.++++... ..+|++..+..- .++.+ .+
T Consensus 72 lsRNfG~~~-Ai~aGl~~----a~Gd~vi~mD~DL-QdpPe~Ip~li~~~~-~G~DvV~~~r~~-r~~~~-----~r--- 135 (324)
T PRK10714 72 LNRNYGQHS-AIMAGFSH----VTGDLIITLDADL-QNPPEEIPRLVAKAD-EGYDVVGTVRQN-RQDSW-----FR--- 135 (324)
T ss_pred CCCCCCHHH-HHHHHHHH----CCCCEEEEECCCC-CCCHHHHHHHHHHHH-CCCCEEEEEECC-CCCCH-----HH---
T ss_conf 988988568-99999873----4799899986888-759889999999870-488689998888-87757-----88---
Q ss_pred ECCCCCCCHHHHH-CCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH--HCCCEEEEEEECC
Q ss_conf 1454442001111-03577753111223520135520023333320799821112084479899--7896266998458
Q gi|254780765|r 155 ASPSENGCFRALY-FTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL--EARMRIDVKIVQS 230 (268)
Q Consensus 155 ~~~~~~~~~~aly-fsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l--eng~~I~~~~~~~ 230 (268)
+...+..| +++...+.+...+ ..+.-++++++++.+..++.... -+|.+ +-|++...+++..
T Consensus 136 -----~~~s~l~~~l~~~~~~~~~~d~--~~~frl~~r~vv~~l~~~~e~~~-------f~~gl~~~~g~~~~~i~~~~ 200 (324)
T PRK10714 136 -----KTASKMINRLIQRTTGKAMGDY--GCMLRAYRRHIVDAMLHCHERST-------FIPILANIFARRAIEIPVHH 200 (324)
T ss_pred -----HHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHCCCCCC-------HHHHHHHHCCCCEEEEEEEC
T ss_conf -----9999999999998539987875--31244137999999996378650-------69999997287429998504
No 104
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.69 E-value=1.1 Score=24.48 Aligned_cols=178 Identities=11% Similarity=0.022 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHCC-C-CEEEEE----CCCC--CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 67226689999999679-9-869998----6833--00010001222222222234565204899997422334521000
Q gi|254780765|r 32 NGLPMILHTAIRARKAN-I-GRVIVA----VDDT--KINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~-~-~~viVa----Tdd~--~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
++.+.|..+++.++... . -+|+|+ ||+. .|.++..+++-.......+..-|. +.+....-.....++|.
T Consensus 8 N~~~~l~~~i~Sil~Qt~~~~EiivvDDgStD~t~~ii~~~~~~~~~~~~~~~~~~n~G~---~~n~n~gi~~a~geyi~ 84 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGV---ARNFESLLQAADGDYVF 84 (214)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH---HHHHHHHHHHCCCCEEE
T ss_conf 988899999999983799886999998999723799999999758865136665888059---99999999864787574
Q ss_pred ECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEE-ECCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 0152210100000122333210-13443211111122011003754431465-145444200111103577753111223
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVV-ASPSENGCFRALYFTRTKTPHGTGPFY 181 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~-~~~~~~~~~~alyfsR~~ip~~~~~~~ 181 (268)
.+-+|- +..|+.+..+++.+. +++++++..-....+.. +.....-.. .............+.+.+.+
T Consensus 85 ~lD~DD-~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 153 (214)
T cd04196 85 FCDQDD-IWLPDKLERLLKAFLKDDKPLLVYSDLELVDEN---GNPIGESFFEYQKIKPGTSFNNLLFQNVVT------- 153 (214)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEECCEEEECCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-------
T ss_conf 137765-628659999999998589908999273999899---989234433335677023399999718887-------
Q ss_pred CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEE
Q ss_conf 520135520023333320799821112084479899789626699
Q gi|254780765|r 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVK 226 (268)
Q Consensus 182 ~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~ 226 (268)
+ +..+|+++.+++...... .+...|+.+..+.+-.+.+|..+
T Consensus 154 -g-~~~~~Rk~~~~~~g~~~~-~~~~~~D~~l~l~~~~~~~i~~i 195 (214)
T cd04196 154 -G-CTMAFNRELLELALPFPD-ADVIMHDWWLALLASAFGKVVFL 195 (214)
T ss_pred -C-EEEEEEHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCEEEE
T ss_conf -6-189988999998579994-44745499999999968989998
No 105
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=91.39 E-value=1 Score=24.71 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHCCC--C--EEEEECC----C-CCHHHHCCC-C-CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 672266899999996799--8--6999868----3-300010001-2-22222222234565204899997422334521
Q gi|254780765|r 32 NGLPMILHTAIRARKANI--G--RVIVAVD----D-TKINEIVLQ-A-GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQ 100 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~~--~--~viVaTd----d-~~I~~~~~~-~-g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d 100 (268)
+....|..+++++..+.. + +|+|+-| + .++...+.+ + +..+.... ...|= +.|++..-.....+
T Consensus 59 NEe~~I~~~i~Sl~~~dYP~~~lEIIvVdDgStD~T~ei~~~~~~~~p~~~v~~~~--~n~GK---a~ALN~gl~~A~Ge 133 (439)
T TIGR03111 59 NSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGK---AKALNAAIYNSIGK 133 (439)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECC--CCCCH---HHHHHHHHHHCCCC
T ss_conf 73889999999999679999855999997899517999999988658983999768--98985---99999999977889
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCC-CC-CCEEEEECCCCCCCHHHHHCCCCCCC---
Q ss_conf 0000152210100000122333210-134432111111220110037-54-43146514544420011110357775---
Q gi|254780765|r 101 IIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDD-PN-IVKIVVASPSENGCFRALYFTRTKTP--- 174 (268)
Q Consensus 101 ~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d-~n-~vKvi~~~~~~~~~~~alyfsR~~ip--- 174 (268)
+|+.+-+|. ..+|+.+.+++..|. +++...++... ..+.+..+. ++ ....+. ...++.+.++..-
T Consensus 134 ~iv~~DADt-~le~daL~~lv~~F~~dp~V~Av~G~V-~~~~~~i~~~~n~~~~ll~-------~~q~~EY~~~f~~~R~ 204 (439)
T TIGR03111 134 YIIHIDSDG-KLHKDAIKNMVTRFENNPDIHAMTGVI-LTDKELIEKTKGRFLKLIR-------RCEYFEYAQAFLAGRN 204 (439)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHCCCEEEEECEE-EECCCHHCCCCCHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_conf 899980898-868569999999872099668996637-4054210132227878999-------9999999999999899
Q ss_pred --CCCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHHHH-HHHH-CCCEEEEEEECCCCCCCCCHHHHHHH
Q ss_conf --31112235201-35520023333320799821112084479-8997-89626699845888876899999999
Q gi|254780765|r 175 --HGTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLEQL-RALE-ARMRIDVKIVQSNAMSVDTTNDLEKV 244 (268)
Q Consensus 175 --~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lEqL-R~le-ng~~I~~~~~~~~~~~IDt~~Dl~~v 244 (268)
...+...--=| .-+|++++|.+...+.... ..|++|.- |+-. .|++|... +.-..-.+.|+++...
T Consensus 205 ~~s~~~~i~~isGa~~afRr~aL~~vGG~d~~t--ltED~DLT~ri~~~~g~kI~f~--p~Av~yte~Petl~~L 275 (439)
T TIGR03111 205 FESQVNSLFTLSGAFSAFRRETILKTQLYNSET--VGEDTDMTFQIRELLDGKVYLC--ENAIFYVDPIDGLNKL 275 (439)
T ss_pred HHHHCCCEEEECCCHHHEEHHHHHHCCCCCCCC--CCHHHHHHHHHHHHCCCEEEEC--CCCEEEEECCHHHHHH
T ss_conf 999739978986831210299999809989998--5074999999999769839976--6757998676329999
No 106
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.35 E-value=1.2 Score=24.42 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHCCC--C--EEEEECC----C-CCHHHHC-CCCCCCCCC-CC-CCCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 2266899999996799--8--6999868----3-3000100-012222222-22-2345652048999974223345210
Q gi|254780765|r 34 LPMILHTAIRARKANI--G--RVIVAVD----D-TKINEIV-LQAGFESVM-TH-TSHQSGSDRIFEALNIIDSDKKSQI 101 (268)
Q Consensus 34 kplI~~v~~~a~~s~~--~--~viVaTd----d-~~I~~~~-~~~g~~~i~-t~-~~~~~GTdRi~ea~~~l~~~~~~d~ 101 (268)
...|..+++.+..... + +|||+-| . .+|.+.. ......+.. .. .....| -+.|++..-.....++
T Consensus 9 ~~~i~~~l~sl~~q~yp~~~~EVivvdd~StD~T~~i~~~~~~~~~~~~~~~~~~~~~~~g---k~~aln~g~~~a~ge~ 85 (229)
T cd04192 9 AENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISG---KKNALTTAIKAAKGDW 85 (229)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCH---HHHHHHHHHHHCCCCE
T ss_conf 8999999999995789988689999989797167999999970569745530246777725---9999999998646776
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC------CCCCCCC
Q ss_conf 0001522101000001223332101344321111112201100375443146514544420011110------3577753
Q gi|254780765|r 102 IVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF------TRTKTPH 175 (268)
Q Consensus 102 vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf------sR~~ip~ 175 (268)
|+.+-+|. .++|+.+..++..+.++....+........+..+.. . ...+++ .+.. .
T Consensus 86 i~~lDaD~-~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~--~ 147 (229)
T cd04192 86 IVTTDADC-VVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLA---------K------FQRLDWLSLLGLIAGS--F 147 (229)
T ss_pred EEEECCCC-CCCHHHHHHHHHHHHCCCCEEEECCEEEECCCCHHH---------H------HHHHHHHHHHHHHHHH--H
T ss_conf 99856765-658769999999974899479988741007999999---------9------9999999999999998--5
Q ss_pred CCCCCCCCEE-EEEEEHHHHHHHHCCCCC-CCHHHCCHHHH-HHHHCCCEEEEEEECCC---CCCCCCHHHH
Q ss_conf 1112235201-355200233333207998-21112084479-89978962669984588---8876899999
Q gi|254780765|r 176 GTGPFYQHLG-IYAYRREALKRFTQLSPS-VLEQRESLEQL-RALEARMRIDVKIVQSN---AMSVDTTNDL 241 (268)
Q Consensus 176 ~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t-~lE~~E~lEqL-R~leng~~I~~~~~~~~---~~~IDt~~Dl 241 (268)
.....+-..| -.+|+++.|.+...+... .+-..|+-+.+ |+...|+++..+..+.- ....+|-.+|
T Consensus 148 ~~~~~~~~~G~~~~~rr~~~~~vGGfd~~~~~~~~Dd~~~~~~l~~~g~ki~y~~~p~a~v~~~~p~t~~~~ 219 (229)
T cd04192 148 GLGKPFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKEL 219 (229)
T ss_pred HCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCHHHH
T ss_conf 069955850621532399999809988999863699999999998089979998379869998788999999
No 107
>TIGR01105 galF regulatory protein GalF; InterPro: IPR005774 This family of proteins, GalF, represents a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose . ; GO: 0030234 enzyme regulator activity, 0006011 UDP-glucose metabolic process.
Probab=89.30 E-value=0.4 Score=27.25 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=38.5
Q ss_pred CCEEEEEECC-CC------CCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6569998177-67------888988500000672266899999996799869998683
Q gi|254780765|r 8 EKVLVIIPAR-LN------SMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD 58 (268)
Q Consensus 8 ~ki~~iIpAR-~~------S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd 58 (268)
.+.-++||.. +| .+-+| |-+.++..||||+|+++....+++.+|+++|-.
T Consensus 2 ~nlkaviPvaGlGmhmlPatkaiP-kemlP~~dkPmiqyivdeivaaGikei~lvth~ 58 (297)
T TIGR01105 2 ANLKAVIPVAGLGMHMLPATKAIP-KEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHA 58 (297)
T ss_pred CCCCEECCCCCCHHHHHHHHHCCC-HHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 754101221120123200111021-121221143278899999886030103234201
No 108
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.84 E-value=2.5 Score=22.34 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHCC--CCEEEEECCC------CCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 7226689999999679--9869998683------3000100012222222222345652048999974223345210000
Q gi|254780765|r 33 GLPMILHTAIRARKAN--IGRVIVAVDD------TKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 33 gkplI~~v~~~a~~s~--~~~viVaTdd------~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
+.-.|..+++.+.... -.+|+|+-|+ +.+.++..++....+........| .+.+.+..-...++++++.
T Consensus 8 ~~~~l~~~l~sl~~Q~~~~~eIivvdd~S~d~t~~~~~~~~~~~~~~~~~~~~~~~~g---~~~a~N~g~~~a~~d~i~~ 84 (180)
T cd06423 8 EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGG---KAGALNAGLRHAKGDIVVV 84 (180)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHHHCCCCCCCCEEEE
T ss_conf 7899999999998189998189999899975789999998621797189844777677---9999752510267557987
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC-CCCCCCC
Q ss_conf 1522101000001223332101-3443211
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQN-PIVDIGT 133 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~~-~~~dv~t 133 (268)
+-+|. .+.++.|..++..+.+ ++...+.
T Consensus 85 lD~D~-~~~~~~l~~~~~~~~~~~~~~~v~ 113 (180)
T cd06423 85 LDADT-ILEPDALKRLVVPFFADPKVGAVQ 113 (180)
T ss_pred ECCCC-CCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 43872-008569999999998795989998
No 109
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=86.50 E-value=2.7 Score=22.10 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHCCC-C--EEEEE----CCCC-C-HHHHCCCC-CCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCC
Q ss_conf 672266899999996799-8--69998----6833-0-00100012-2222222223456520-4899997422334521
Q gi|254780765|r 32 NGLPMILHTAIRARKANI-G--RVIVA----VDDT-K-INEIVLQA-GFESVMTHTSHQSGSD-RIFEALNIIDSDKKSQ 100 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~~-~--~viVa----Tdd~-~-I~~~~~~~-g~~~i~t~~~~~~GTd-Ri~ea~~~l~~~~~~d 100 (268)
++..-|..+++.+..... + +|||+ ||+- + +.++.+++ ..........+.++.- -++.|.+.--.....+
T Consensus 7 N~~~~l~~~l~Svl~Qty~~~~EiIiVDDgStD~t~~ii~~~~~~~~~~~~~~~~~~~~~~~~~G~~~arN~gi~~A~Ge 86 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGR 86 (219)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 98899999999998488999899999989998156999999998666777699982367766467899999999977888
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC---CCCCHHHHHCCCCCCCCCC
Q ss_conf 0000152210100000122333210134432111111220110037544314651454---4420011110357775311
Q gi|254780765|r 101 IIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS---ENGCFRALYFTRTKTPHGT 177 (268)
Q Consensus 101 ~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~---~~~~~~alyfsR~~ip~~~ 177 (268)
+|..+-+|- +..|+.+...+..+.....+++. +.... ...+. ..+. ..... .......++.+..+
T Consensus 87 yI~flDsDD-~~~p~~l~~~~~~~~~~~~~~v~--~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 154 (219)
T cd06913 87 YLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIG--CQVRR--IPEDS-TERY-TRWINTLTREQLLTQVYTSHGP----- 154 (219)
T ss_pred EEEEECCCC-CCCHHHHHHHHHHHHHCCCCEEE--EEEEE--ECCCC-CEEC-CCCCCCCCHHHHHHHHHHHCCC-----
T ss_conf 788618976-42765999999999859996999--87899--66998-5231-3223568989999988761698-----
Q ss_pred CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 12235201355200233333207998211120844-798997896266998
Q gi|254780765|r 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 178 ~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
... ..-..|+++.+.+...+.+...-..|+.+ ++|++..|.++..+.
T Consensus 155 --~~~-~~~~~~rr~~~~~~g~f~e~~~~~~ED~~~~~r~l~~~~~i~~i~ 202 (219)
T cd06913 155 --TVI-MPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVD 202 (219)
T ss_pred --CEE-EHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf --344-003553299999928999657867028999999997499699969
No 110
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=85.15 E-value=3.2 Score=21.69 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=70.0
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHC--C-CCEEEEECC-C-CCHHHHCCCCCCCCCCCCCC---
Q ss_conf 56569998177678889885000006722668999999967--9-986999868-3-30001000122222222223---
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKA--N-IGRVIVAVD-D-TKINEIVLQAGFESVMTHTS--- 78 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s--~-~~~viVaTd-d-~~I~~~~~~~g~~~i~t~~~--- 78 (268)
..+|-.||||+-.. .-|..++..++.. . +|+|+|.-+ + +.-++.+...|+.++-...-
T Consensus 30 ~~~VSVvlPalNEe--------------~TVg~vv~~i~~~~~~lvDEviVvDsgStD~Ta~~A~~aGA~V~~~~~ilp~ 95 (307)
T PRK13915 30 GRTVSVVLPALNEE--------------ATVGKVVDSIRPLLVGLVDELIVIDSGSTDDTAIRAAAAGARVVSREEILPE 95 (307)
T ss_pred CCEEEEEECCCCHH--------------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCEEEEHHHCCCC
T ss_conf 98699993477657--------------7799999999885058875699977999765899999819979823450645
Q ss_pred C--CCCC-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCC
Q ss_conf 4--5652-048999974223345210000152210100000122333210-1344321
Q gi|254780765|r 79 H--QSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIG 132 (268)
Q Consensus 79 ~--~~GT-dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~ 132 (268)
+ ..|- +-++..+.. ...|+|+.+-+|---++|..+..++.-+. ++..+.+
T Consensus 96 ~~~~~GKGealW~~l~~----~~gDivvfvDaDi~~~~p~~v~~Ll~Pll~~p~v~~v 149 (307)
T PRK13915 96 VPPRPGKGEALWRSLAA----TRGDIVVFVDADLINPHPMFVPGLVGPLLTDPGVHLV 149 (307)
T ss_pred CCCCCCCHHHHHHHHHC----CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 79989971999999860----6777899970676768878999874012469973388
No 111
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=84.75 E-value=2 Score=22.96 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=90.8
Q ss_pred CCEEEEEECCCCCCCC----CCCEECCCC---CCCHHHHHHHHHHHC----------CC-CEEEEECC---CCCHHHHCC
Q ss_conf 6569998177678889----885000006---722668999999967----------99-86999868---330001000
Q gi|254780765|r 8 EKVLVIIPARLNSMRF----PKKILADIN---GLPMILHTAIRARKA----------NI-GRVIVAVD---DTKINEIVL 66 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rl----p~K~L~~i~---gkplI~~v~~~a~~s----------~~-~~viVaTd---d~~I~~~~~ 66 (268)
.|+.+++.|=+-.||| | |-+.+|+ |+++++...++.+.. +. -.+++-|. +++..++.+
T Consensus 14 gkvavv~laGG~GTrlG~~~p-Kg~~~i~~~~~~sl~~l~~e~i~~l~~~~~~~~~~~~~ip~~iMtS~~T~~~T~~~l~ 92 (323)
T cd04193 14 GKVAVLLLAGGQGTRLGFDGP-KGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK 92 (323)
T ss_pred CCEEEEEECCCCCCCCCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 998999957887455689997-1625726889980999999999999999877438888516999788534589999998
Q ss_pred CC---CCC-----CC---------------CCCCC----CCCCCHHHHHHHHH------HCCCCCCCEEEECCCCCCCCC
Q ss_conf 12---222-----22---------------22223----45652048999974------223345210000152210100
Q gi|254780765|r 67 QA---GFE-----SV---------------MTHTS----HQSGSDRIFEALNI------IDSDKKSQIIVNMQADIPNIE 113 (268)
Q Consensus 67 ~~---g~~-----~i---------------~t~~~----~~~GTdRi~ea~~~------l~~~~~~d~vV~lqGD~Pli~ 113 (268)
++ |.+ ++ +..+. ...|..-++.|+.. +.. ....++...|.|.||..
T Consensus 93 ~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~-~Gi~yi~v~~vDN~L~~ 171 (323)
T cd04193 93 ENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK-RGIKYIHVYSVDNILVK 171 (323)
T ss_pred HCCCCCCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH-CCCEEEEEEECCCCCCC
T ss_conf 67646888556478716873148689871568997514279997179999998784889996-69889999965744323
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCC--------CCC--CCCCC
Q ss_conf 00012233321013443211111122011003754431465145444200111103577753--------111--22352
Q gi|254780765|r 114 PEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPH--------GTG--PFYQH 183 (268)
Q Consensus 114 ~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~--------~~~--~~~~h 183 (268)
+-+- .++..+...++++++-+++-..+++- |-++...+.. ...+.+|- +|. ... ..+-.
T Consensus 172 ~~Dp-~~lG~~~~~~~~~~~kvv~K~~~~ek-----vG~l~~~~gk---~~vvEYse--l~~~~~~~~~~~g~l~f~~gN 240 (323)
T cd04193 172 VADP-VFIGFCISKGADVGAKVVRKRYPTEK-----VGVVVLVDGK---PQVVEYSE--ISDELAEKRDADGELQYNAGN 240 (323)
T ss_pred CCCH-HHHHHHHHCCCCEEEEEEECCCCCCC-----EEEEEEECCE---EEEEEECC--CCHHHHHHHCCCCCEEECCCC
T ss_conf 2488-99999987499637899888889983-----1089998990---69998425--898898401876616514556
Q ss_pred EEEEEEEHHHHHHHHCC
Q ss_conf 01355200233333207
Q gi|254780765|r 184 LGIYAYRREALKRFTQL 200 (268)
Q Consensus 184 vGIy~f~~~~L~~~~~l 200 (268)
++++.|+-++|++....
T Consensus 241 i~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 241 IANHFFSLDFLEKAAEM 257 (323)
T ss_pred HHHHHEEHHHHHHHHHH
T ss_conf 77753139999999873
No 112
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=82.65 E-value=2.7 Score=22.11 Aligned_cols=128 Identities=13% Similarity=-0.017 Sum_probs=61.8
Q ss_pred EEEEEC-----CCCCCCCCCCEECCCC---CCCHHHHHHHHHHHC------CC-CEEEEECC---CCCHHHHCCCCCCC-
Q ss_conf 999817-----7678889885000006---722668999999967------99-86999868---33000100012222-
Q gi|254780765|r 11 LVIIPA-----RLNSMRFPKKILADIN---GLPMILHTAIRARKA------NI-GRVIVAVD---DTKINEIVLQAGFE- 71 (268)
Q Consensus 11 ~~iIpA-----R~~S~Rlp~K~L~~i~---gkplI~~v~~~a~~s------~~-~~viVaTd---d~~I~~~~~~~g~~- 71 (268)
.+++.| |||++ -| |-+.+++ |+++++..+++.+.. +. -..++-|. +++..++.++++..
T Consensus 2 avllLaGGlGTrLG~~-~p-Kg~~~v~~~~~~t~~~l~~~~i~~l~~~~~~~~~iPl~iMtS~~T~~~T~~~~~~~~~~~ 79 (266)
T cd04180 2 AVVLLAGGLGTRLGKD-GP-KSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKN 79 (266)
T ss_pred EEEEECCCCCCCCCCC-CC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 8999668762346999-97-370672589998599999999999999861799831999668004479999999839996
Q ss_pred --C--C---------------CCCCC----CCCCCHHHHHHHHH------HCCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf --2--2---------------22223----45652048999974------223345210000152210100000122333
Q gi|254780765|r 72 --S--V---------------MTHTS----HQSGSDRIFEALNI------IDSDKKSQIIVNMQADIPNIEPEILASVLL 122 (268)
Q Consensus 72 --~--i---------------~t~~~----~~~GTdRi~ea~~~------l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~ 122 (268)
+ + +..+. ...|..-++.|+.. +.. ....++...|.|.++..+-+- .++.
T Consensus 80 ~~v~~f~Q~~~P~~~~~g~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~-~Gieyi~v~~vDN~la~v~DP-~flG 157 (266)
T cd04180 80 SYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLE-KGYRYIHFIGVDNLLVKVADP-LFIG 157 (266)
T ss_pred CCEEEEECCCCCEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCHHHHHH-CCCEEEEEEECCCCCCHHHHH-HHHH
T ss_conf 64499952886148578871679999424777996279999997780999996-698899999668666002479-9999
Q ss_pred HHCCCCCCCCCCCCCCCCHH
Q ss_conf 21013443211111122011
Q gi|254780765|r 123 PLQNPIVDIGTLGTRIHGST 142 (268)
Q Consensus 123 ~~~~~~~dv~tl~~~~~~~~ 142 (268)
.+..+++++++-+++-+.++
T Consensus 158 ~~~~~~~~~~~kvv~Kt~~d 177 (266)
T cd04180 158 IAIQNRKAINQKVVPKTRNE 177 (266)
T ss_pred HHHHHCCCEEEEEEECCCCC
T ss_conf 99971997589997899898
No 113
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=82.11 E-value=3.1 Score=21.71 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=85.0
Q ss_pred CCCEEEEEECCCCCCCC----CCCEECCC---CCCCHHHHHHHHHHH--------C----CC-CEEEEECC---CCCHHH
Q ss_conf 56569998177678889----88500000---672266899999996--------7----99-86999868---330001
Q gi|254780765|r 7 KEKVLVIIPARLNSMRF----PKKILADI---NGLPMILHTAIRARK--------A----NI-GRVIVAVD---DTKINE 63 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rl----p~K~L~~i---~gkplI~~v~~~a~~--------s----~~-~~viVaTd---d~~I~~ 63 (268)
..++.+++.|-+-.||| | |-+.+| .+|+|.+--.+|.+. + +. -..||-|. ++...+
T Consensus 107 ~gkVavlllAGGqGTRLG~~~P-KG~~~igl~s~ksLfql~aeri~~lq~la~~~~~~~~~~~ip~yIMTS~~t~~~T~~ 185 (499)
T PTZ00339 107 KGEVAVLILAGGLGTRLGSDKP-KGLLECTPLKKKSLFQFHCEKIRRLEEMAAAASGGGDDPTIYILVLTSSFNHDQTRQ 185 (499)
T ss_pred CCCEEEEEECCCCCCCCCCCCC-CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 3988999950787466799999-711115899987199999999999999988750678888603999778504699999
Q ss_pred HCCCCC------------------------CCCCCCCCC----CCCCCHHHHHHHHH-------HCC--CCCCCEEEECC
Q ss_conf 000122------------------------222222223----45652048999974-------223--34521000015
Q gi|254780765|r 64 IVLQAG------------------------FESVMTHTS----HQSGSDRIFEALNI-------IDS--DKKSQIIVNMQ 106 (268)
Q Consensus 64 ~~~~~g------------------------~~~i~t~~~----~~~GTdRi~ea~~~-------l~~--~~~~d~vV~lq 106 (268)
+-++++ ++.+|.++. -.+|..-++.|+.. ++. .....+|-..|
T Consensus 186 ff~~~~~FGl~~~~V~fF~Q~~lP~~d~~~Gkille~~~~i~~aPdGNGG~y~AL~~sg~~~~iL~dm~~rGI~yi~~~~ 265 (499)
T PTZ00339 186 FLQENNFFGLDKEQVIFFKQSSLPCYDENTGRVLMESRGSLCTAPGGNGDVFKALAKCSEFMSILDKLEKLGIKYVQIIS 265 (499)
T ss_pred HHHHCCCCCCCHHHEEEEECCCEEEEECCCCEEEECCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 99867777887576899973873368547996875588806877899638999988624311279999974986999998
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCC---------CCCCCCC
Q ss_conf 2210100000122333210134432111111220110037544314651454442001111035---------7775311
Q gi|254780765|r 107 ADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTR---------TKTPHGT 177 (268)
Q Consensus 107 GD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR---------~~ip~~~ 177 (268)
-|.||+.+-+= ..|-.....++++++-+.+-.+++|- |-++...+..- .++-+|- .+...-.
T Consensus 266 VDN~L~kvaDP-~FiG~~~~~~~~~~~Kvv~K~~p~E~-----VGvv~~~~g~~---~VvEYSEi~~~~ae~~~~~~~l~ 336 (499)
T PTZ00339 266 IDNILAKVADP-EFIGLASSFPAHVVLNKCPKRSDDES-----VGVFCLKDDEW---QVVEYTEINERILENKDATTNLK 336 (499)
T ss_pred ECCCCCCCCCC-HHHHHHHHCCCCHHCEEEECCCCCCC-----CCEEEEECCEE---EEEEECCCCHHHHHCCCCCCCEE
T ss_conf 65333246780-66348776486100027872689876-----54389888926---89970366877762778877601
Q ss_pred CCCCCCEEEEEEEHHHHHHHH
Q ss_conf 122352013552002333332
Q gi|254780765|r 178 GPFYQHLGIYAYRREALKRFT 198 (268)
Q Consensus 178 ~~~~~hvGIy~f~~~~L~~~~ 198 (268)
...+-.++...|..+||++..
T Consensus 337 ~f~agnI~~H~fs~~FL~~v~ 357 (499)
T PTZ00339 337 QFNCGNICSHIFSLDFLKKVA 357 (499)
T ss_pred ECCCCCHHHEEECHHHHHHHH
T ss_conf 024344321363199999887
No 114
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=81.22 E-value=4.5 Score=20.71 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=93.3
Q ss_pred ECCCCC-CCHHHHHHHHHHHCC-C-CEEEEECCCCC------HHHHCCCCC---CCCCCCCCCCCCCCHH-HHHHHHHHC
Q ss_conf 000067-226689999999679-9-86999868330------001000122---2222222234565204-899997422
Q gi|254780765|r 28 LADING-LPMILHTAIRARKAN-I-GRVIVAVDDTK------INEIVLQAG---FESVMTHTSHQSGSDR-IFEALNIID 94 (268)
Q Consensus 28 L~~i~g-kplI~~v~~~a~~s~-~-~~viVaTdd~~------I~~~~~~~g---~~~i~t~~~~~~GTdR-i~ea~~~l~ 94 (268)
|.++.| -|-|+.+++...... . .+|+++.||.. +.+.+.++. ..++...+ ..|... ++ ++...-
T Consensus 46 l~P~~~e~~~l~~~L~sl~~qdYP~~evi~~vd~~~D~a~~i~~~l~~~~p~~~~~~v~~~~--~~g~n~K~~-~L~~~~ 122 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDAR--RHGPNRKVS-NLINML 122 (373)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHH-HHHHHH
T ss_conf 98079983049999999986789982899997899997899999999868999879985887--678878999-999999
Q ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCC--CCC
Q ss_conf 334521000015221010000012233321013443211111122011003754431465145444200111103--577
Q gi|254780765|r 95 SDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFT--RTK 172 (268)
Q Consensus 95 ~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfs--R~~ 172 (268)
...++|+++..-+|. ...|+.+..++..+.+...+.+|..........+-.. ... ......++. +..
T Consensus 123 ~~a~~dil~~~DaD~-~~~p~~L~~lVa~l~~~~vglVt~~~~~~~~~~~~~~----l~~------~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 123 PHARHDILVIADSDI-SVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSR----LGA------MGINHNFLPSVMVA 191 (373)
T ss_pred HHCCCCEEEEECCCC-CCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHH----HHH------HHHHHHHHHHHHHH
T ss_conf 862788899987997-5284899999999748997758325646788878999----999------99999888889999
Q ss_pred CCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEE
Q ss_conf 753111223520135520023333320799821112084479899-789626699
Q gi|254780765|r 173 TPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVK 226 (268)
Q Consensus 173 ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~ 226 (268)
.+... ..+-.-+..+|+++.|++...+..-..+..|+.+.=+.+ +.|+++...
T Consensus 192 ~~~~~-~~~~~G~~~~~RR~~l~~iGG~~~~~~~laED~~L~~~i~~~G~rv~l~ 245 (373)
T TIGR03472 192 RALGR-ARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLA 245 (373)
T ss_pred HHCCC-CCCCCCCCCEEEHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEC
T ss_conf 76146-5335674011359999974797777215256899999999669988965
No 115
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.78 E-value=5.1 Score=20.41 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCCCHHHHHHHHHHHCC--CCEEEEE----CCC-C-CHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCCE
Q ss_conf 067226689999999679--9869998----683-3-00010001222222222234565204-8999974223345210
Q gi|254780765|r 31 INGLPMILHTAIRARKAN--IGRVIVA----VDD-T-KINEIVLQAGFESVMTHTSHQSGSDR-IFEALNIIDSDKKSQI 101 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~--~~~viVa----Tdd-~-~I~~~~~~~g~~~i~t~~~~~~GTdR-i~ea~~~l~~~~~~d~ 101 (268)
.+...++..+++...... .++|+|+ ||+ . .+.+.....++.++.. ++ ..|..+ ...+++.+. ..+.++
T Consensus 6 ~N~~~~l~~~L~Sl~~q~~~~~eIiVVDn~StD~t~~~l~~~~~~~~v~~i~~-~~-N~G~a~~~N~Gi~~a~-~~~~d~ 82 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRL-PE-NLGGAGGFYEGVRRAY-ELGYDW 82 (202)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEC-CC-CCCHHHHHHHHHHHHH-HCCCEE
T ss_conf 28889999999999827799988999979498761665300035666899856-88-8732789999999887-559818
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 00015221010000012233321013443211111122011003754431465145444200111103577753111223
Q gi|254780765|r 102 IVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFY 181 (268)
Q Consensus 102 vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~ 181 (268)
|+.+..|. ...|..+..+++.+..++..++.... .+.+. |+
T Consensus 83 v~~ld~D~-~~~~~~l~~l~~~~~~~~~~~~~~~~-----------------~~~~~---------------~F------ 123 (202)
T cd04185 83 IWLMDDDA-IPDPDALEKLLAYADKDNPQFLAPLV-----------------LDPDG---------------SF------ 123 (202)
T ss_pred EEEECCCC-CCCCCHHHHHHHHHHCCCCEEEEEEE-----------------ECCCC---------------CE------
T ss_conf 99989987-54922999999986579977999789-----------------84799---------------98------
Q ss_pred CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEE
Q ss_conf 5201355200233333207998211120844-798997896266
Q gi|254780765|r 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRID 224 (268)
Q Consensus 182 ~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~ 224 (268)
.| ..|+++.+++..-+.+.----.|+.| .+|+...|++|.
T Consensus 124 --~g-~l~~r~v~~~vG~fde~~f~~~eD~D~~~R~~~~G~~i~ 164 (202)
T cd04185 124 --VG-VLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGIY 164 (202)
T ss_pred --EE-EEEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCEE
T ss_conf --99-988899999758997686673829999999997499699
No 116
>pfam00535 Glycos_transf_2 Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.
Probab=79.76 E-value=5.1 Score=20.41 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHC-CC-CEEEEECCC--CCHHHHCCCC-----CCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCE
Q ss_conf 6722668999999967-99-869998683--3000100012-----2222222223456520-48999974223345210
Q gi|254780765|r 32 NGLPMILHTAIRARKA-NI-GRVIVAVDD--TKINEIVLQA-----GFESVMTHTSHQSGSD-RIFEALNIIDSDKKSQI 101 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s-~~-~~viVaTdd--~~I~~~~~~~-----g~~~i~t~~~~~~GTd-Ri~ea~~~l~~~~~~d~ 101 (268)
+....|..+++..... .. -+|+|+-|. +.-.+.++++ ++.++. .+.. .|-. ....+++. .+.++
T Consensus 8 N~~~~l~~~l~sl~~q~~~~~eiiivDd~S~d~t~~~~~~~~~~~~~v~~~~-~~~~-~g~~~a~n~g~~~----a~~~~ 81 (168)
T pfam00535 8 NEEKYLEECLESLLNQTYPNFEIIVVDDGSTDGTVEIAEEYAKKDPRIRVIR-LEEN-LGKAAARNAGLKL----ATGDY 81 (168)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHCEEEEECCCCCCCEEEE-EECC-CCCHHHHHHHHHH----CCCCE
T ss_conf 8889999999999738799859999989998101001210013467600244-2024-5746888899996----79985
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 00015221010000012233321013443211111
Q gi|254780765|r 102 IVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGT 136 (268)
Q Consensus 102 vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~ 136 (268)
|+.+-+|. ...|+.|..+++.+.+...+++....
T Consensus 82 v~~lD~D~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 115 (168)
T pfam00535 82 ILFLDADD-EVAPDWLEKLVELLEKNGADIVIGSR 115 (168)
T ss_pred EEEECCCC-CCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99985899-86876999999999839976999986
No 117
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=78.09 E-value=5.7 Score=20.09 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCEEEEEEC-----CCCCCCCCCCEECCC-CCCCHHHHHHHHHH----HCCCC-EEEEECC---CCCHHHHCCCCCCC--
Q ss_conf 656999817-----767888988500000-67226689999999----67998-6999868---33000100012222--
Q gi|254780765|r 8 EKVLVIIPA-----RLNSMRFPKKILADI-NGLPMILHTAIRAR----KANIG-RVIVAVD---DTKINEIVLQAGFE-- 71 (268)
Q Consensus 8 ~ki~~iIpA-----R~~S~Rlp~K~L~~i-~gkplI~~v~~~a~----~s~~~-~viVaTd---d~~I~~~~~~~g~~-- 71 (268)
+|++++..| |||.+ -| |-+.++ .|++.++..+++.. ..+.+ ..++-|. +++..++.++++..
T Consensus 2 ~k~avlkLnGGlGTrlG~~-~p-K~~i~V~~~~tfldl~~~qi~~l~~~yg~~vPl~iMtS~~T~~~T~~~l~ky~~~~~ 79 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCT-GP-KSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNV 79 (300)
T ss_pred CCEEEEEECCCCCCCCCCC-CC-CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 7379999269874556889-98-177882899809999999999999971998318997886477899999997488788
Q ss_pred ---CCC----------------CCCC------CCCCCHHHHHHHHH------H-CCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf ---222----------------2223------45652048999974------2-23345210000152210100000122
Q gi|254780765|r 72 ---SVM----------------THTS------HQSGSDRIFEALNI------I-DSDKKSQIIVNMQADIPNIEPEILAS 119 (268)
Q Consensus 72 ---~i~----------------t~~~------~~~GTdRi~ea~~~------l-~~~~~~d~vV~lqGD~Pli~~~~Id~ 119 (268)
++. +.++ +..|..-++.|+.. + ....+|-+| -+.|. |. ..+|.
T Consensus 80 ~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~w~P~GhGdiy~aL~~sG~Ld~l~~~G~eyifv--~nvDN-Lg--a~~Dp 154 (300)
T cd00897 80 DIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV--SNIDN-LG--ATVDL 154 (300)
T ss_pred CEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHCCCEEEEE--EECCC-CC--CCCCH
T ss_conf 769984377312725889653557899720246699718999988778499998679769999--82566-31--10698
Q ss_pred H-HHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 3-3321013443211111122011
Q gi|254780765|r 120 V-LLPLQNPIVDIGTLGTRIHGST 142 (268)
Q Consensus 120 ~-i~~~~~~~~dv~tl~~~~~~~~ 142 (268)
. +.++..++++++.=+++-+.++
T Consensus 155 ~~lg~~~~~~~~~~~eV~~Kt~~d 178 (300)
T cd00897 155 RILNHMVDNKAEYIMEVTDKTRAD 178 (300)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 999998743997599962557788
No 118
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=77.69 E-value=4.4 Score=20.80 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=64.7
Q ss_pred EEEEEC-----CCCCCCCCCCEECCC---CCCCHHHHHHHHHHH----C----CC-CEEEEECC---CCCHHHHCCCC--
Q ss_conf 999817-----767888988500000---672266899999996----7----99-86999868---33000100012--
Q gi|254780765|r 11 LVIIPA-----RLNSMRFPKKILADI---NGLPMILHTAIRARK----A----NI-GRVIVAVD---DTKINEIVLQA-- 68 (268)
Q Consensus 11 ~~iIpA-----R~~S~Rlp~K~L~~i---~gkplI~~v~~~a~~----s----~~-~~viVaTd---d~~I~~~~~~~-- 68 (268)
+.|+.| |||++. | |-+.++ .|+++++..+++.+. + +. -..+|-|. +++..++.+++
T Consensus 2 avvllaGG~GTRLG~~~-p-K~~l~v~~~~~~tl~~l~~~~i~~~~~~~~~~~~~~iP~~iMtS~~t~~~T~~~~~~~~~ 79 (315)
T cd06424 2 VFVLVAGGLGERLGYSG-I-KIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNY 79 (315)
T ss_pred EEEEECCCCCCCCCCCC-C-CCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf 79997787843248998-8-556012788998099999999999999860578988657997898736999999986630
Q ss_pred -CCC---C----------C--------CCCCCC------CCCCHHHHHHHHH------HCCCCCCCEEEECCCCCCCCCC
Q ss_conf -222---2----------2--------222234------5652048999974------2233452100001522101000
Q gi|254780765|r 69 -GFE---S----------V--------MTHTSH------QSGSDRIFEALNI------IDSDKKSQIIVNMQADIPNIEP 114 (268)
Q Consensus 69 -g~~---~----------i--------~t~~~~------~~GTdRi~ea~~~------l~~~~~~d~vV~lqGD~Pli~~ 114 (268)
|.+ + + +..++. ..|-.-++.|+.. +. .....++...|-|.||..+
T Consensus 80 FGl~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~-~~Gi~yi~v~~vDN~L~~~ 158 (315)
T cd06424 80 FGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWI-EAGYKWLVFFQDTNALAFK 158 (315)
T ss_pred CCCCCCCEEEEECCCEEEEECCCCCEECCCCCCCCEECCCCCCCHHHHHHHHCCCHHHHH-HCCCEEEEEEECCCCCCCC
T ss_conf 368854559984387466826998344267877753007999738999998777299999-7798799999447622221
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0012233321013443211111122
Q gi|254780765|r 115 EILASVLLPLQNPIVDIGTLGTRIH 139 (268)
Q Consensus 115 ~~Id~~i~~~~~~~~dv~tl~~~~~ 139 (268)
-+- .++-.....++++.+.+.+-.
T Consensus 159 adP-~flG~~~~~~~~~~~k~v~r~ 182 (315)
T cd06424 159 AIP-AVLGVSATKSLDMNSLTVPRK 182 (315)
T ss_pred CCH-HHHHHHHHCCCCCEEEEEECC
T ss_conf 156-663588757975024787558
No 119
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=74.55 E-value=5.1 Score=20.40 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 89999742233452100001522101000001223332101344321111112201100375443146514544420011
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
+..+++.. ..++++.+.||.- .+|+++.++++.+.+.++|++..... ..... .+.+..+.+.+.-- +...+.
T Consensus 71 i~~G~~~a----~~d~i~~~D~D~~-~~~~~i~~~i~~~~~~~~d~V~gsR~-~~~~~-~~~~~~r~i~~~~~-~~~~~~ 142 (185)
T cd04179 71 VRAGFKAA----RGDIVVTMDADLQ-HPPEDIPKLLEKLLEGGADVVIGSRF-VRGGG-AGMPLLRRLGSRLF-NFLIRL 142 (185)
T ss_pred HHHHHHHC----CCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCEEEEEEEE-CCCCC-CCCCHHHHHHHHHH-HHHHHH
T ss_conf 99888752----5888999279987-09999999999999789859999976-08987-67755899999999-999999
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH
Q ss_conf 110357775311122352013552002333332
Q gi|254780765|r 166 LYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT 198 (268)
Q Consensus 166 lyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~ 198 (268)
++...++ --+.|.-+|++++++...
T Consensus 143 --~~~~~i~------D~~~g~k~~~~~~~~~i~ 167 (185)
T cd04179 143 --LLGVRIS------DTQSGFRLFRREVLEALL 167 (185)
T ss_pred --HHCCCCC------CCCCCEEEEEHHHHHHHH
T ss_conf --9599985------699874998899999875
No 120
>PRK13118 consensus
Probab=72.50 E-value=7.9 Score=19.19 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCC---CC--CCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 067226689999999679986999868330001000---12--222-2222223--456520489999742233452100
Q gi|254780765|r 31 INGLPMILHTAIRARKANIGRVIVAVDDTKINEIVL---QA--GFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQII 102 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~---~~--g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~v 102 (268)
++.=|.|+....+|+..+.+ -+.+.+.++ +. ... ++||.-+ +..|-|+..+.++....+ . +
T Consensus 58 ~ADGPvIq~A~~rAL~~G~~-------~~~~~~~v~~~r~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~Gvd--G--v 126 (269)
T PRK13118 58 MADGPAIQLASERALAAGQG-------LADVLQMVREFRQGDQTTPVVLMGYLNPIEIYGYERFVAQAKEAGVD--G--L 126 (269)
T ss_pred CCCCHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC--E--E
T ss_conf 66579999999999967986-------88999999998643899998997400078786399999999985997--4--6
Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 00152210100000122333210134432111111220110
Q gi|254780765|r 103 VNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD 143 (268)
Q Consensus 103 V~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~ 143 (268)
+. .|-| ++.-+.+.+..++.+.+...+++|.+.++.
T Consensus 127 Ii--pDLP---~ee~~~~~~~~~~~gl~~I~lvaPtt~~~R 162 (269)
T PRK13118 127 IL--VDLP---PEEADELRAPAQAHGLDFIRLTSPTTSDER 162 (269)
T ss_pred EC--CCCC---HHHHHHHHHHHHHCCCCHHEEECCCCCHHH
T ss_conf 45--8999---789999999999759846403698987899
No 121
>PRK12338 hypothetical protein; Provisional
Probab=72.11 E-value=7.1 Score=19.50 Aligned_cols=201 Identities=15% Similarity=0.207 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHCCCCEEEE-----ECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CEE------
Q ss_conf 26689999999679986999-----868330001000122222222223456520489999742233452-100------
Q gi|254780765|r 35 PMILHTAIRARKANIGRVIV-----AVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKS-QII------ 102 (268)
Q Consensus 35 plI~~v~~~a~~s~~~~viV-----aTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~-d~v------ 102 (268)
+-+.++++|+.+-+.+ ++| +.+=-.+.++-....+.+++-..+-.-..+|++..++......+| +++
T Consensus 94 ~~le~vI~r~~~~~~s-ivIEGVHLvPgfi~~~~~~~~~~i~F~i~~~~E~kH~eRF~~Rak~m~r~~Kyvkyf~niR~I 172 (320)
T PRK12338 94 PAIEKVIKRAVTDADD-IVIEGVHLVPGLINIEQFYEYANIHFFILYADEEEHKERFVKRAMEIKRGGKHLEYFRENRII 172 (320)
T ss_pred HHHHHHHHHHHHCCCC-EEEEEEEECHHHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999864886-799845305555057662266663699998176899999999998850265089999988999
Q ss_pred ---EECCCCC---CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCC
Q ss_conf ---0015221---0100000122333210134432111111220110037544314651454442001111035777531
Q gi|254780765|r 103 ---VNMQADI---PNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHG 176 (268)
Q Consensus 103 ---V~lqGD~---Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~ 176 (268)
.+=++|+ |-|+-..||+.++.....--+++..++--+.-++++.. - -++.+.+-.. ..+-| ++|--
T Consensus 173 qd~L~~~Adeh~iP~I~N~nid~sV~~i~~~I~~~~~~~~~~hsVddl~~e--~-eII~~~~~~i-~dI~y----~ipgf 244 (320)
T PRK12338 173 HDFLVSQADEHGIPVIKNDDIDRTVSKVLSVIREVSVVVKLVHSVEDLDVE--D-EIIKENNGRI-TDISY----PIPGF 244 (320)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH--H-HHHHHCCCEE-EEEEE----CCCCC
T ss_conf 999984167619973047635568999999999873465226768888887--8-9999739758-75100----28875
Q ss_pred CCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 11223520135520023333320799821112084479899789626699845888876899999999999730724
Q gi|254780765|r 177 TGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHH 253 (268)
Q Consensus 177 ~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~~ 253 (268)
+.+..+.+|+| ..+-..+|.+.-+..-|+.|+++-|=-+-||+.-+-.. +.| ++-|..+.+=|++..+
T Consensus 245 k~pl~r~v~v~--d~~e~d~Fik~ln~~p~~ke~l~~lY~lsn~vhsh~I~------aPD-~esl~~ii~eL~~eG~ 312 (320)
T PRK12338 245 KDPLKRSVNIY--DRDEADKFIKILNEEKKSKEDLKHLYSLSNNVHSHKIC------APD-EESLNRIIEELREEGF 312 (320)
T ss_pred CCCCEEECCCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEE------CCC-HHHHHHHHHHHHHCCC
T ss_conf 74312344778--70789999999830855678999999861673257751------799-7999999999886481
No 122
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=69.96 E-value=9 Score=18.84 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred CCCC-CEECCCCCCC--HHHHHHHHHHHCC-C-C--EEEEECCC--------------------CCHHHHCCCCCCCCCC
Q ss_conf 8988-5000006722--6689999999679-9-8--69998683--------------------3000100012222222
Q gi|254780765|r 22 RFPK-KILADINGLP--MILHTAIRARKAN-I-G--RVIVAVDD--------------------TKINEIVLQAGFESVM 74 (268)
Q Consensus 22 Rlp~-K~L~~i~gkp--lI~~v~~~a~~s~-~-~--~viVaTdd--------------------~~I~~~~~~~g~~~i~ 74 (268)
.+|. -++.+--+.| ++..|+..|+... . + +|||.-|. .++.++|++.|+..+
T Consensus 129 ~~PtVDV~IPtYNEp~~vv~~Tl~aa~~ldYP~~kl~V~vLDDG~td~~~~~~~~~~~~~~~rR~e~~~la~~lGv~Yi- 207 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYI- 207 (713)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE-
T ss_conf 1895348964899998999999999986899985466999979897100234301233334413999999998098655-
Q ss_pred CCCCCC---CCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCCC--CCHHHCCCCC
Q ss_conf 222345---65204899997422334521000015221010000012233321-01344321111112--2011003754
Q gi|254780765|r 75 THTSHQ---SGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPL-QNPIVDIGTLGTRI--HGSTDPDDPN 148 (268)
Q Consensus 75 t~~~~~---~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~-~~~~~dv~tl~~~~--~~~~~~~d~n 148 (268)
|++++. -|. +.+|++.. +.++|+.+.+|.- -.++.+.+.+-.| .+++...+ -+|- .+++-+. .|
T Consensus 208 tR~~n~hAKAGN--LN~AL~~t----~GelIaVfDAD~v-P~~~FL~~tvg~F~~DpklalV--QTPq~F~N~Dp~~-~N 277 (713)
T TIGR03030 208 TRPRNVHAKAGN--INNALKHT----DGELILIFDADHV-PTRDFLQRTVGWFVEDPKLFLV--QTPHFFVSPDPIE-RN 277 (713)
T ss_pred ECCCCCCCCCHH--HHHHHHHC----CCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEE--ECCEEEECCCHHH-HC
T ss_conf 379878876167--89998736----9878999678878-6689999998987029976999--4897568988787-41
Q ss_pred C--CEEEEECCCCCCCHHHHHCCCCCCCCCC--CCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCH-HHHHHHHCCCE
Q ss_conf 4--3146514544420011110357775311--12235201-35520023333320799821112084-47989978962
Q gi|254780765|r 149 I--VKIVVASPSENGCFRALYFTRTKTPHGT--GPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESL-EQLRALEARMR 222 (268)
Q Consensus 149 ~--vKvi~~~~~~~~~~~alyfsR~~ip~~~--~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~l-EqLR~leng~~ 222 (268)
. -..+-+ .+.+ |.+-.-|... +..+ .+| ...++|++|++...+.... ..|+. -.+|+-..|++
T Consensus 278 L~~~~~~p~-------e~~~-Fy~~iq~g~d~wnaaf-~cGS~aV~RR~AL~eIGGf~~~t--ITED~~Tsl~Lh~~Gw~ 346 (713)
T TIGR03030 278 LGTFRRMPN-------ENEL-FYGLIQDGNDFWNAAF-FCGSAAVLRREALDEIGGIAGET--VTEDAETALKLHRRGWN 346 (713)
T ss_pred CHHHCCCCC-------HHHH-HHHHHHCCCCCCCEEE-ECCCHHHHHHHHHHHCCCCCCCC--EEHHHHHHHHHHHCCCE
T ss_conf 112036750-------4778-8999855646688079-82617987499999807977760--40108999999977983
Q ss_pred EEEEEEC-CCCCCCCCHHHHHHH
Q ss_conf 6699845-888876899999999
Q gi|254780765|r 223 IDVKIVQ-SNAMSVDTTNDLEKV 244 (268)
Q Consensus 223 I~~~~~~-~~~~~IDt~~Dl~~v 244 (268)
...+.-. ..+.+=+|-.++..=
T Consensus 347 s~Yl~~~la~GLaPetl~~~i~Q 369 (713)
T TIGR03030 347 SAYLDRPLIAGLAPETLSGHIGQ 369 (713)
T ss_pred EEEECCHHHCCCCCCCHHHHHHH
T ss_conf 89857487667794289999999
No 123
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=67.83 E-value=4.4 Score=20.80 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=45.0
Q ss_pred HCCHHHHHHH-HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 2084479899-78962669984588887689999999999973072456887763
Q gi|254780765|r 208 RESLEQLRAL-EARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYKKIF 261 (268)
Q Consensus 208 ~E~lEqLR~l-eng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~~~~~~~~~~ 261 (268)
.+-+|.-|+| |+|+||....+++ -+|.|-..||+..+.++++..++-.+.+|+
T Consensus 286 ~~~~~at~llrDaG~KV~yH~MPG-lPGs~fErDl~~Fr~~Fedp~FkPDmLKIY 339 (573)
T TIGR01211 286 RDVVEATRLLRDAGLKVVYHIMPG-LPGSSFERDLKMFREIFEDPRFKPDMLKIY 339 (573)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 999999877665046220311753-335663568999988626879897861566
No 124
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.80 E-value=10 Score=18.56 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHC-CCCCCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 006722668999999967998--699986833000100-012222-2222223--4565204899997422334521000
Q gi|254780765|r 30 DINGLPMILHTAIRARKANIG--RVIVAVDDTKINEIV-LQAGFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 30 ~i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~-~~~g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
++..=|.|++...+|.+.+.+ +++ ++.+.+ ++.+.. ++|+--+ +..|-+++.+.++.... +-++
T Consensus 40 P~aDGpvIq~A~~~aL~~g~~~~~~~------~~~~~~r~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv----~Gvi 109 (242)
T cd04724 40 PVADGPVIQAASERALANGVTLKDVL------ELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGV----DGLI 109 (242)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHCCCCCEEEEEECHHHHHHCHHHHHHHHHHCCC----CEEE
T ss_conf 77658999999999997699499999------9999987347988899984457665289999999997599----7587
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
Q ss_conf 01522101000001223332101344321111112201100
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDP 144 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~ 144 (268)
. .|-|+ +.-+.+...+++.+.+...+++|.+.++.+
T Consensus 110 i--pDLP~---ee~~~~~~~~~~~~i~~I~lvsPtt~~~ri 145 (242)
T cd04724 110 I--PDLPP---EEAEEFREAAKEYGLDLIFLVAPTTPDERI 145 (242)
T ss_pred E--CCCCH---HHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 0--69995---784689999986598388996898878999
No 125
>TIGR00970 leuA_yeast 2-isopropylmalate synthase; InterPro: IPR005668 Alpha-isopropylmalate synthase (2.3.3.13 from EC) catalyses the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=67.44 E-value=10 Score=18.51 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHCC-C-CEEEEECCC-----------CCHHHHC-------------------CCCCCCCCCCCCCCCC
Q ss_conf 226689999999679-9-869998683-----------3000100-------------------0122222222223456
Q gi|254780765|r 34 LPMILHTAIRARKAN-I-GRVIVAVDD-----------TKINEIV-------------------LQAGFESVMTHTSHQS 81 (268)
Q Consensus 34 kplI~~v~~~a~~s~-~-~~viVaTdd-----------~~I~~~~-------------------~~~g~~~i~t~~~~~~ 81 (268)
.+||.||++++.-++ . =..|.||.+ +|....| .+|+.++ ||++-+
T Consensus 108 e~LI~RT~eAl~GAk~A~vH~YnatS~lfRevVFr~sr~E~~~~A~~g~K~vrk~tk~a~~~~~T~W~fEy---SPE~fs 184 (615)
T TIGR00970 108 EELIKRTVEALSGAKKATVHLYNATSDLFREVVFRASREEVLALAVEGSKLVRKLTKDAAKSKETRWSFEY---SPESFS 184 (615)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE---CCCCCC
T ss_conf 77899999983068621675401124256678640576899998642789999998733415776453100---677678
Q ss_pred CCH-----HHHHHHHHHC-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 520-----4899997422-33452100001522101000001223332101
Q gi|254780765|r 82 GSD-----RIFEALNIID-SDKKSQIIVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 82 GTd-----Ri~ea~~~l~-~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
||+ .|-||++.+= .-...-||-||.++.=+-+|+.--..|++|-.
T Consensus 185 dTe~efA~evCeAVk~~w~Pt~e~PIIFNLPATVE~~tPNvYAD~IEyfst 235 (615)
T TIGR00970 185 DTELEFAVEVCEAVKEVWKPTEERPIIFNLPATVEMATPNVYADSIEYFST 235 (615)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCHHHHHHHHHH
T ss_conf 885478999999877761787576824538863460678600220888873
No 126
>PRK10073 predicted glycosyl transferase; Provisional
Probab=67.23 E-value=10 Score=18.48 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=61.7
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC-C-EEEEEC----CC--CCHHHHCCCCC-CCCCCCCCC
Q ss_conf 656999817767888988500000672266899999996799-8-699986----83--30001000122-222222223
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI-G-RVIVAV----DD--TKINEIVLQAG-FESVMTHTS 78 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~-~-~viVaT----dd--~~I~~~~~~~g-~~~i~t~~~ 78 (268)
.++-+|||+- +...-|..+++.+..... + +|+++- |+ +-+.++++++. +.++ .++
T Consensus 6 P~vSiiiP~Y--------------N~e~yl~~cl~Si~~Qt~~~~EiIiVdDgStD~s~~i~~~~~~~~~~i~vi--~~~ 69 (329)
T PRK10073 6 PKLSIIVPLY--------------NAGKDFRACMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLL--HQA 69 (329)
T ss_pred CCEEEEEECC--------------CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEE--ECC
T ss_conf 9789999288--------------988999999999980899997999998999825899999998129989999--668
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 45652048999974223345210000152210100000122333210134432111
Q gi|254780765|r 79 HQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTL 134 (268)
Q Consensus 79 ~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl 134 (268)
. .|- +.|-+.--.....++|..+-+|- ++.|+.+..++....++++|++..
T Consensus 70 N-~G~---s~ARN~gl~~a~G~yi~f~DsDD-~l~~~~le~l~~~a~~~~~DIv~~ 120 (329)
T PRK10073 70 N-AGA---SVARNTGLAVATGKYVAFVDADD-EVYPTMYETLMTMALEDDLDVAQC 120 (329)
T ss_pred C-CCH---HHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 8-861---89999999974888899975772-758876999999997479999998
No 127
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=66.42 E-value=4.9 Score=20.47 Aligned_cols=60 Identities=25% Similarity=0.530 Sum_probs=35.8
Q ss_pred EEEEECCCCCHHHHCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCC--CCCCCCC-HHHHHH
Q ss_conf 6999868330001000-----122222222223456520489999742233452100001522--1010000-012233
Q gi|254780765|r 51 RVIVAVDDTKINEIVL-----QAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQAD--IPNIEPE-ILASVL 121 (268)
Q Consensus 51 ~viVaTdd~~I~~~~~-----~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD--~Pli~~~-~Id~~i 121 (268)
+|.||=|++|..+..+ +.++++| +--.+|. ||++.+. +.++|+||. | ||.+|-- .+.++-
T Consensus 4 ri~i~DDNkEFc~lL~eY~~~Q~D~EVv---G~A~nG~----~a~~~I~-~q~PD~vvL---DIIMPhLDGiGVLEKl~ 71 (270)
T TIGR02875 4 RIVIADDNKEFCNLLKEYLAAQEDMEVV---GVAHNGV----DALELIK-EQKPDVVVL---DIIMPHLDGIGVLEKLN 71 (270)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEE---EECCCHH----HHHHHHH-HCCCCEEEE---CCCCCCCCHHHHHHHHH
T ss_conf 8999828889999999998528983899---7414768----9999996-089989995---15043000579999988
No 128
>pfam09837 DUF2064 Uncharacterized protein conserved in bacteria (DUF2064). This domain, found in various prokaryotic proteins, has no known function.
Probab=66.01 E-value=11 Score=18.34 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHHCC-CCEEEEE-CCCCC---HHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9999679-9869998-68330---00100012222222222345652--0489999742233452100001522101000
Q gi|254780765|r 42 IRARKAN-IGRVIVA-VDDTK---INEIVLQAGFESVMTHTSHQSGS--DRIFEALNIIDSDKKSQIIVNMQADIPNIEP 114 (268)
Q Consensus 42 ~~a~~s~-~~~viVa-Tdd~~---I~~~~~~~g~~~i~t~~~~~~GT--dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~ 114 (268)
..+.... .+ ++|+ |++.. ........+..++.+. .|. +|...|+...-. ..++-||.+-.|+|.+++
T Consensus 3 ~~~~~~~~~~-~~l~~t~~~~~~~~~~w~~~~~~~~~~Q~----~gdLG~Rm~~a~~~~~~-~g~~~v~lIGsD~P~l~~ 76 (121)
T pfam09837 3 AVAAALPVAD-VVLAYTGDGALRAAEAWLALGGVTVIPQG----GGDLGERMARAFRQAFA-AGYRPVLLIGTDCPDLTA 76 (121)
T ss_pred HHHHCCCCCC-EEEEECCCCHHHHHHHCCCCCCCEEEECC----CCCHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCH
T ss_conf 6653688765-89998899568777640267996688259----99989999999999984-389858998488465899
Q ss_pred CHHHHHHHHHCCCC
Q ss_conf 00122333210134
Q gi|254780765|r 115 EILASVLLPLQNPI 128 (268)
Q Consensus 115 ~~Id~~i~~~~~~~ 128 (268)
..|..+.+.+.+.+
T Consensus 77 ~~l~~A~~~L~~~d 90 (121)
T pfam09837 77 ELLAQAFEALERHD 90 (121)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999862199
No 129
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.75 E-value=12 Score=18.07 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHC-CC-CEEEEECC--CCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 722668999999967-99-86999868--330001000122222222223456520489999742233452100001522
Q gi|254780765|r 33 GLPMILHTAIRARKA-NI-GRVIVAVD--DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQAD 108 (268)
Q Consensus 33 gkplI~~v~~~a~~s-~~-~~viVaTd--d~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD 108 (268)
....|..+++..... .. -+|||+-| .+.-.+.+++++..++.. + .|- +.|.+.--.....++|+.+-+|
T Consensus 10 e~~~l~~~L~Sl~~q~~~~~EvIVVDdgStD~T~~i~~~~~~~~~~~--~--~G~---a~a~N~G~~~A~Ge~i~flDaD 82 (221)
T cd02522 10 EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISS--P--KGR---ARQMNAGAAAARGDWLLFLHAD 82 (221)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEC--C--CCH---HHHHHHHHHHCCCCEEEEECCC
T ss_conf 88899999999975789983899998969876499999725225526--9--787---9999999986788879987752
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCC---CCCCCCCCCCCCEE
Q ss_conf 101000001223332101344321111112201100375443146514544420011110357---77531112235201
Q gi|254780765|r 109 IPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRT---KTPHGTGPFYQHLG 185 (268)
Q Consensus 109 ~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~---~ip~~~~~~~~hvG 185 (268)
. .+.|+.+..++..+.+.....+.....+..+.... ... ....+.|. ..|+. +.|
T Consensus 83 ~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~G------~~~ 140 (221)
T cd02522 83 T-RLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPRL-----RLL----------ELGANLRSRLFGLPYG------DQG 140 (221)
T ss_pred C-CCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHH-----HHH----------HHHHHHHHCCCCCCCC------CCC
T ss_conf 3-68906999999999739984555568765996578-----899----------9988887334676777------705
Q ss_pred EEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEE
Q ss_conf 3552002333332079982111208447-9899789626
Q gi|254780765|r 186 IYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRI 223 (268)
Q Consensus 186 Iy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I 223 (268)
+ .++++.+++...+.+.. ..|+.|. +|+-..|+.+
T Consensus 141 ~-~iRr~~f~~vGGFde~~--~~ED~dL~~Rl~~~G~~~ 176 (221)
T cd02522 141 L-FIRRELFEELGGFPELP--LMEDVELVRRLRRRGRPA 176 (221)
T ss_pred E-EEEHHHHHHCCCCCCCC--CCCHHHHHHHHHHCCCEE
T ss_conf 3-66799999849987867--554499999999739978
No 130
>PRK10116 universal stress protein UspC; Provisional
Probab=63.63 E-value=7.6 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=8.6
Q ss_pred CEECCCCCCCHHHHHHHHH
Q ss_conf 5000006722668999999
Q gi|254780765|r 26 KILADINGLPMILHTAIRA 44 (268)
Q Consensus 26 K~L~~i~gkplI~~v~~~a 44 (268)
..|..+.+-|-=+.++++|
T Consensus 5 hILVAvDlS~~S~~~i~kA 23 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKA 23 (142)
T ss_pred EEEEEECCCHHHHHHHHHH
T ss_conf 8999941885069999999
No 131
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=63.35 E-value=12 Score=18.02 Aligned_cols=106 Identities=22% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHCCC-CEEEEECC----C-CCHHH-HCCCCCCCCCCCC-CCCCCCC-HHHHHHHHHHCC-------CC
Q ss_conf 2266899999996799-86999868----3-30001-0001222222222-2345652-048999974223-------34
Q gi|254780765|r 34 LPMILHTAIRARKANI-GRVIVAVD----D-TKINE-IVLQAGFESVMTH-TSHQSGS-DRIFEALNIIDS-------DK 97 (268)
Q Consensus 34 kplI~~v~~~a~~s~~-~~viVaTd----d-~~I~~-~~~~~g~~~i~t~-~~~~~GT-dRi~ea~~~l~~-------~~ 97 (268)
...|.+++++...... -+|+|+-| + .++++ .....+..++... ++-..|- .....++..+.. +.
T Consensus 9 e~~I~~ti~sl~~~~~~~eIivvdDgS~D~T~~~~~~~~~~~~~~vi~~~~~~~~~GK~~ALN~al~~~~~~~~~~~~~~ 88 (191)
T cd06436 9 EAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADP 88 (191)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999738999689999799992099999998308987999954776678515788889998664320001356
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5210000152210100000122333210134432111111220
Q gi|254780765|r 98 KSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHG 140 (268)
Q Consensus 98 ~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~ 140 (268)
+.++|+.+-+|. .++|+.+..++..|.+++...+.....+.+
T Consensus 89 ~~eii~v~DAD~-~~~~d~L~~~~~~f~dp~v~~Vqg~~~~~N 130 (191)
T cd06436 89 ERVIIAVIDADG-RLDPNALEAVAPYFSDPRVAGTQSRVRMYN 130 (191)
T ss_pred CCEEEEEECCCC-CCCHHHHHHHHHHHCCCCEEEEECCCEECC
T ss_conf 641899953787-328899999999725988159943403268
No 132
>pfam03213 Pox_P35 Poxvirus P35 protein.
Probab=62.59 E-value=4.7 Score=20.63 Aligned_cols=109 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCC
Q ss_conf 34521000015221010000012233321013443211111122011003754431465145444200111103577753
Q gi|254780765|r 96 DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPH 175 (268)
Q Consensus 96 ~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~ 175 (268)
+.+.++||.+.-|.-+.++..++.||..+++++.|+..+....++.. ++..++.... ..+|..
T Consensus 116 ~~~~~fivVvEdDnTl~~it~i~~~I~~M~~knidilQLrE~~~~~~-------~rt~~~~~~~----p~l~~Y------ 178 (325)
T pfam03213 116 DPESKFIVVVEDDNTLRDITTIHPLIKSMKEKNIDILQLRETLHNNN-------VRTLLNQSGN----PSLYSY------ 178 (325)
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCCC-------HHHHCCCCCC----CCEEEE------
T ss_conf 87765699993797213537699999999865954875123550332-------4442356689----642663------
Q ss_pred CCCCCCCCEEEEEEEHHHHHHHH-CCCCCC-CHHHCCHHHHHHHHCCCEE
Q ss_conf 11122352013552002333332-079982-1112084479899789626
Q gi|254780765|r 176 GTGPFYQHLGIYAYRREALKRFT-QLSPSV-LEQRESLEQLRALEARMRI 223 (268)
Q Consensus 176 ~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~-lE~~E~lEqLR~leng~~I 223 (268)
.+.+-=.++-|.-+.+...++. .+.++. ..-.-+.|+.| +||-..|
T Consensus 179 -tGgyDvSLsAYIIr~~ta~kl~~~i~~~~Gvs~~l~~Ei~r-lE~~l~i 226 (325)
T pfam03213 179 -TGGYDVSLSAYIIRVSTAKKLYAEIIKNGGVSSSLSFEIYR-LENELGI 226 (325)
T ss_pred -CCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEHHH-HHHHHCC
T ss_conf -37532267899997278899999998658966661211887-7766273
No 133
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=61.91 E-value=13 Score=17.86 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCC--CCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCCEEEECCC
Q ss_conf 7226689999999679986999868--33000100012--22222222234565204-8999974223345210000152
Q gi|254780765|r 33 GLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQA--GFESVMTHTSHQSGSDR-IFEALNIIDSDKKSQIIVNMQA 107 (268)
Q Consensus 33 gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~--g~~~i~t~~~~~~GTdR-i~ea~~~l~~~~~~d~vV~lqG 107 (268)
+...+..+++... ...++|+|+=+ ++...+..+.. ++.++...++ .|-.+ ...+++.+.. ..+++++.+-.
T Consensus 9 ~~~~l~~~L~sl~-~q~~eIiVVDN~S~d~~~~~~~~~~~~v~~i~~~~N--~G~a~g~N~Gi~~a~~-~~~d~i~~ln~ 84 (237)
T cd02526 9 DLSKLKELLAALA-EQVDKVVVVDNSSGNDIELRLRLNSEKIELIHLGEN--LGIAKALNIGIKAALE-NGADYVLLFDQ 84 (237)
T ss_pred CHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCC--CCHHHHCCCCCHHHHC-CCCCEEEEECC
T ss_conf 8999999999766-379989999698890289999861998699989997--7858872743033411-79778999357
Q ss_pred CCCCCCCCHHHHHHHHHCC--CCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCC----CCC
Q ss_conf 2101000001223332101--3443211111122011003754431465145444200111103577753111----223
Q gi|254780765|r 108 DIPNIEPEILASVLLPLQN--PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTG----PFY 181 (268)
Q Consensus 108 D~Pli~~~~Id~~i~~~~~--~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~----~~~ 181 (268)
|. .++|+.++.++..... ...+++.+...+.+..... ....... . ....+........ ...
T Consensus 85 D~-~~~~~~l~~l~~~~~~~~~~~~vg~~~p~~~d~~~~~--~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~ 151 (237)
T cd02526 85 DS-VPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE--NSPGVRK--S--------GYKLRIQKEGEEGLKEVDFL 151 (237)
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCC--CCCCCCC--C--------CCCCCCCCCCCCCCEECCEE
T ss_conf 56-5590599999999985222798899971798689980--0454211--2--------53322354424784460430
Q ss_pred CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEEE
Q ss_conf 5201355200233333207998211120844-7989978962669984
Q gi|254780765|r 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKIV 228 (268)
Q Consensus 182 ~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~~ 228 (268)
---|+ .++++.+++..-+.+.----.|+.| .+|+...|++|..++-
T Consensus 152 ~~sg~-lir~~~~~~vG~fde~fF~y~ED~Dl~~R~~~~G~~i~~~p~ 198 (237)
T cd02526 152 ITSGS-LISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPD 198 (237)
T ss_pred EECCE-EEEHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 30143-778999998579968977937199999999985997999898
No 134
>PRK10018 predicted glycosyl transferase; Provisional
Probab=60.61 E-value=14 Score=17.72 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHCCC-C-EEEEECC----CCCHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 672266899999996799-8-6999868----330001000122---222222223456520489999742233452100
Q gi|254780765|r 32 NGLPMILHTAIRARKANI-G-RVIVAVD----DTKINEIVLQAG---FESVMTHTSHQSGSDRIFEALNIIDSDKKSQII 102 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~~-~-~viVaTd----d~~I~~~~~~~g---~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~v 102 (268)
+....|..+++.+..... + +++|+-| .+.+.+++...+ +.++ ..+...|. +.|.+..-.....++|
T Consensus 15 N~~~~l~~aI~SVl~Qty~n~EiIIVDD~Std~~~~~~~~~~~~d~RI~~i--~~~~N~G~---~~aRN~gi~~A~GeyI 89 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYI--HNDINSGA---CAVRNQAIMLAQGEYI 89 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE--ECCCCCCH---HHHHHHHHHHHCCCEE
T ss_conf 977999999999995799898999998999987999999997589988999--87897889---9999999999569989
Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 0015221010000012233321013443211111--12201100375443146514544420011110357775311122
Q gi|254780765|r 103 VNMQADIPNIEPEILASVLLPLQNPIVDIGTLGT--RIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF 180 (268)
Q Consensus 103 V~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~--~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~ 180 (268)
..|-+|- +..|+-|...++........ +.+++ .+.....+..+..+.. +.+++....---.
T Consensus 90 afLDsDD-~~~PnkLE~ql~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 152 (279)
T PRK10018 90 TGIDDDD-EWTPNRLSVFLAHKQQLVTH-AFLYANDYVCQGEVYSQPASLPL---------------YPKSPYSRRLFYK 152 (279)
T ss_pred EEECCCC-CCCCCHHHHHHHHHHHCCCE-EEEECCCEEECCCEEECCCCCCC---------------CCCCCCCHHHHHC
T ss_conf 9999876-87856699999614422763-58732456853825844666546---------------6755433887750
Q ss_pred CCCEEEEEEEHHH-HHHHHCCCCCCCHHHCCHH-HHHHHH-CC--CEE----EEEEECCCCCCC-CCHHHHHHHHHHHHC
Q ss_conf 3520135520023-3333207998211120844-798997-89--626----699845888876-899999999999730
Q gi|254780765|r 181 YQHLGIYAYRREA-LKRFTQLSPSVLEQRESLE-QLRALE-AR--MRI----DVKIVQSNAMSV-DTTNDLEKVRTLIPH 250 (268)
Q Consensus 181 ~~hvGIy~f~~~~-L~~~~~l~~t~lE~~E~lE-qLR~le-ng--~~I----~~~~~~~~~~~I-Dt~~Dl~~v~~il~~ 250 (268)
.-.+|-.+|.+.. +++ . +-...+-..|+-| |||++. .| +++ ..+.++....-| +.++-+.--..+++
T Consensus 153 ~n~vgn~vf~~~~~~k~-~-~FDe~l~~~qDyD~wlRL~~~yG~~~~~~~~~~~~~~~~~~~~it~~~~~~~g~~~~~~- 229 (279)
T PRK10018 153 RNIIGNQVFTWAWRFKE-C-LFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKKFSGYFHFYR- 229 (279)
T ss_pred CCCCCCEEEEEHHHHHH-H-CCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCCEECCCHHHHHHHHHHHH-
T ss_conf 45436367667787656-1-25456774210999999999859734427763799962884300375888878999999-
Q ss_pred CHHHHHHHHHHHHHHHC
Q ss_conf 72456887763456640
Q gi|254780765|r 251 DHHKGLYKKIFNDKILK 267 (268)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (268)
++++.++....|
T Consensus 230 -----kh~~~~~~~~~k 241 (279)
T PRK10018 230 -----KHKDKFDRASKK 241 (279)
T ss_pred -----HHHHHHHHHHHH
T ss_conf -----876889999998
No 135
>PRK13132 consensus
Probab=60.20 E-value=14 Score=17.67 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 06722668999999967998--6999868330001000122222222223--4565204899997422334521000015
Q gi|254780765|r 31 INGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVLQAGFESVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIVNMQ 106 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~~~g~~~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV~lq 106 (268)
++.=|.|+....+|.+.+.+ +++ ++.+.++....=++||.-+ +..|-|+..+.++....+ -++.
T Consensus 52 ~aDGPvIq~A~~~AL~~G~~~~~~~------~~~~~ir~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gvd----GlIi-- 119 (246)
T PRK13132 52 LADGKLIADASFIALQQGVNTDTVF------ELLARVKTKKALVFLVYYNLIFAYGLEKFVKKAKELGIS----GLIV-- 119 (246)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHCCCC----EEEC--
T ss_conf 6558999999999987799899999------999975369997999601088772999999999876998----5775--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22101000001223332101344321111112
Q gi|254780765|r 107 ADIPNIEPEILASVLLPLQNPIVDIGTLGTRI 138 (268)
Q Consensus 107 GD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~ 138 (268)
.|-|+-. -+.+.....+.+.+...+++|.
T Consensus 120 pDLP~ee---~~~~~~~~~~~~i~~I~lvaPT 148 (246)
T PRK13132 120 PDLPFEE---SEELIKECEKYNIALIPLISVT 148 (246)
T ss_pred CCCCHHH---HHHHHHHHHHCCCCEEEEECCC
T ss_conf 7999789---8999999998599701442579
No 136
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=56.48 E-value=16 Score=17.28 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=44.7
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 99999967998699986833000100012222222222345652048999974223345210000152210100000122
Q gi|254780765|r 40 TAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILAS 119 (268)
Q Consensus 40 v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~ 119 (268)
++.-|+..+..+|++++.+++=.+.++++|+..++...+- . ..+.+..+-.....|+++.--| .+..++.
T Consensus 6 ~iq~ak~~Ga~~Vi~~~~~~~r~~~a~~lGa~~~i~~~~~-~----~~~~i~~~~~~~g~d~vid~~g-----~~~~~~~ 75 (131)
T pfam00107 6 AVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE-D----FVERVRELTGGRGVDVVIDCVG-----APATLEQ 75 (131)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-C----HHHHHHHCCCCCCCEEEEECCC-----CHHHHHH
T ss_conf 9999998499879999698899999997599732353322-1----2455654049977649886688-----6667999
Q ss_pred HHHHHCC
Q ss_conf 3332101
Q gi|254780765|r 120 VLLPLQN 126 (268)
Q Consensus 120 ~i~~~~~ 126 (268)
.+.....
T Consensus 76 ~~~~~~~ 82 (131)
T pfam00107 76 ALELLRP 82 (131)
T ss_pred HHHHHCC
T ss_conf 9875359
No 137
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=54.20 E-value=17 Score=17.05 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=50.8
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 88500000672266899999996799869998683300010001222222222234565204899997422334521000
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
+|....-++.=|+=...+.-|+..+..+|+++..+++=.+.++++|+..++...+ +.+.+.+..+......|+|+
T Consensus 163 ~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~-----~~~~~~~~~~t~~~G~Dvvi 237 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK-----EDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEECCC-----HHHHHHHHHHHCCCCCEEEE
T ss_conf 8886999899754329999999849928999948999999898649949996885-----06899999974899976999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 01522101000001223332101
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
..-|. +..++.+++....
T Consensus 238 d~~G~-----~~~~~~~~~~l~~ 255 (341)
T PRK05396 238 EMSGA-----PSAFRQMLDAMNH 255 (341)
T ss_pred ECCCC-----HHHHHHHHHHHHC
T ss_conf 87898-----9999999998635
No 138
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=53.80 E-value=18 Score=17.01 Aligned_cols=159 Identities=12% Similarity=0.165 Sum_probs=71.7
Q ss_pred EEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCC-EEEEEC----CCC-CHHHHC-CCC-CCCCCCCCCCCCCCC
Q ss_conf 998177678889885000006722668999999967998-699986----833-000100-012-222222222345652
Q gi|254780765|r 12 VIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIG-RVIVAV----DDT-KINEIV-LQA-GFESVMTHTSHQSGS 83 (268)
Q Consensus 12 ~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~-~viVaT----dd~-~I~~~~-~~~-g~~~i~t~~~~~~GT 83 (268)
+||||-=.+.+++ .++..+.........+ +|+|+- |+. ++++.. .+. ++.++--.++..-|.
T Consensus 1 IIIP~yNEe~~I~----------~~i~~i~~~~~~~~~~~eIivVDD~StD~T~~i~~~l~~~~~~v~~i~~~~N~G~g~ 70 (181)
T cd04187 1 IVVPVYNEEENLP----------ELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQA 70 (181)
T ss_pred CEEEECCCHHHHH----------HHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEECCCCCCHHH
T ss_conf 9996167888799----------999999999865599879999989997562454201212333204531455764467
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCH
Q ss_conf 04899997422334521000015221010000012233321013443211111122011003754431465145444200
Q gi|254780765|r 84 DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCF 163 (268)
Q Consensus 84 dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~ 163 (268)
.+..+++.. +.|+|+.+.||- --+|+.|.++++.+. +++|++... +.... + +..+.+...-- +...
T Consensus 71 -Ai~~g~~~a----~~d~i~~~D~D~-q~~p~~i~~l~~~~~-~~~D~V~gs-R~~r~----~-~~~r~~~s~~~-~~l~ 136 (181)
T cd04187 71 -ALLAGLDHA----RGDAVITMDADL-QDPPELIPEMLAKWE-EGYDVVYGV-RKNRK----E-SWLKRLTSKLF-YRLI 136 (181)
T ss_pred -HHHHHHHHC----CCCEEEECCCCC-CCCHHHHHHHHHHHH-CCCEEEEEE-EECCC----C-CHHHHHHHHHH-HHHH
T ss_conf -889899855----697477518999-829999999999997-599199999-70788----7-68999999999-9999
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCC
Q ss_conf 111103577753111223520135520023333320799
Q gi|254780765|r 164 RALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSP 202 (268)
Q Consensus 164 ~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~ 202 (268)
+ .+++..++ --+.|.-+|++++|++...++.
T Consensus 137 ~--~l~~~~~~------D~~~gfr~~~r~~~~~i~~~~~ 167 (181)
T cd04187 137 N--KLSGVDIP------DNGGDFRLMDRKVVDALLLLPE 167 (181)
T ss_pred H--HHHCCCCC------CCCCCEEEEEHHHHHHHHHCCC
T ss_conf 9--98799900------7892869988999999874899
No 139
>TIGR02094 more_P_ylases alpha-glucan phosphorylases; InterPro: IPR011834 This family consists of known phosphorylases, and homologues believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related families: Glycogen/starch/alpha-glucan phosphorylase and Glycosyl transferase, family 35.; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=53.69 E-value=14 Score=17.72 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCHHHHCCCCCCCCCCC---CCCCCCCCHH
Q ss_conf 000672266899999996799-86999868-330001000122222222---2234565204
Q gi|254780765|r 29 ADINGLPMILHTAIRARKANI-GRVIVAVD-DTKINEIVLQAGFESVMT---HTSHQSGSDR 85 (268)
Q Consensus 29 ~~i~gkplI~~v~~~a~~s~~-~~viVaTd-d~~I~~~~~~~g~~~i~t---~~~~~~GTdR 85 (268)
++..||-+|+++++-|+...+ ++|+..=| |..++...-+ |+.|++= +|--.|||+=
T Consensus 450 ~D~~GK~~Iq~i~~~s~~Pef~g~ivFlEnYD~~~Ar~LV~-GVDVWLNNP~RPlEASGTSG 510 (618)
T TIGR02094 450 ADEAGKELIQRIVEFSKRPEFRGKIVFLENYDINLARYLVS-GVDVWLNNPRRPLEASGTSG 510 (618)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC-CCEEECCCCCCCHHHCCCCH
T ss_conf 97545899999999862778576278850863788877515-55042176797053258603
No 140
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=53.65 E-value=14 Score=17.57 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=13.3
Q ss_pred CEEEEECCC-CC---HHHHCCCCCCCC
Q ss_conf 869998683-30---001000122222
Q gi|254780765|r 50 GRVIVAVDD-TK---INEIVLQAGFES 72 (268)
Q Consensus 50 ~~viVaTdd-~~---I~~~~~~~g~~~ 72 (268)
..||..|.+ .. ...-.+++|+..
T Consensus 41 k~V~f~sNs~~~~~~~~~~l~~lGi~~ 67 (243)
T TIGR01459 41 KTVYFVSNSSKRVAELEARLKKLGIAA 67 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 918999768601346665787613233
No 141
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=50.27 E-value=14 Score=17.73 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=37.7
Q ss_pred CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECC-------C----CCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 50000067226689999999679-986999868-------3----300010001222222222234565
Q gi|254780765|r 26 KILADINGLPMILHTAIRARKAN-IGRVIVAVD-------D----TKINEIVLQAGFESVMTHTSHQSG 82 (268)
Q Consensus 26 K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTd-------d----~~I~~~~~~~g~~~i~t~~~~~~G 82 (268)
|...+=.+..=+.++.+.+...+ ....+|+|| | .+|.|.|++||+=+ +...-|.+|
T Consensus 143 k~~y~H~dm~DL~~~l~e~~~~Gqy~~~l~vTDGVFSMDGdvApLp~iVE~Ae~Yda~~-yVDDAHGsG 210 (392)
T TIGR01825 143 KKIYKHVDMDDLERVLRENVEEGQYKKKLIVTDGVFSMDGDVAPLPEIVELAEKYDALV-YVDDAHGSG 210 (392)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHHHHHCCCEE-EEECCCCCC
T ss_conf 68984598458999997160337544368996650425678788732334632459579-986334664
No 142
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=48.96 E-value=21 Score=16.54 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 88500000672266899999996799869998683300010001222222222234565204899997422334521000
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
|+....-+++=|+-...+..|+..+..+|+++.-+++=.+.++++|+..+....+ ..+....+......|+++
T Consensus 120 ~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~-------~~~~~~~~~~g~g~D~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEV-------LAERQGGLQNGRGVDVAL 192 (280)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCC-------HHHHHHHHHCCCCCCEEE
T ss_conf 9998999907868999999999849987999919989999999739989837757-------799999972788870999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 015221010000012233321013
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNP 127 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~ 127 (268)
..-| .+..++.+++..+..
T Consensus 193 e~~G-----~~~~~~~a~~~l~~g 211 (280)
T TIGR03366 193 EFSG-----ATAAVRACLESLDVG 211 (280)
T ss_pred ECCC-----CHHHHHHHHHHHHCC
T ss_conf 8789-----889999999986049
No 143
>pfam05991 DUF901 Protein of unknown function (DUF901). This family consists of several hypothetical bacterial proteins as well as some uncharacterized sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=48.59 E-value=18 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=6.5
Q ss_pred EEEECCCCCHHHHCCCCCC
Q ss_conf 9998683300010001222
Q gi|254780765|r 52 VIVAVDDTKINEIVLQAGF 70 (268)
Q Consensus 52 viVaTdd~~I~~~~~~~g~ 70 (268)
|+|||.|..+...+..+|+
T Consensus 97 v~VvTSD~~~q~~v~g~GA 115 (166)
T pfam05991 97 VTVVTSDRAEQWTIFGRGA 115 (166)
T ss_pred EEEECCCHHHHHHHHCCCC
T ss_conf 9999288899989510896
No 144
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=48.48 E-value=14 Score=17.59 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 89999742233452100001522101000001223332101344321111112201100375443146514544420011
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRA 165 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~a 165 (268)
+++.+..+.+....| +|++.|-+|++-++++-++|+..-+..+-+-|.-+-+. .|+|.|+-..+.
T Consensus 79 VaeRL~ei~K~~g~d-~vRiSG~EP~l~~EHvlevIeLl~~~tFvlETNG~~~g-----~drslv~el~nr--------- 143 (228)
T COG5014 79 VAERLLEISKKRGCD-LVRISGAEPILGREHVLEVIELLVNNTFVLETNGLMFG-----FDRSLVDELVNR--------- 143 (228)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCEEEE-----CCHHHHHHHHCC---------
T ss_conf 999999998855886-89962898644689999999863476499975776883-----588899997137---------
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEE
Q ss_conf 1103577753111223520135520023333320799821112084479899-7896266
Q gi|254780765|r 166 LYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRID 224 (268)
Q Consensus 166 lyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~ 224 (268)
.++.--+++-+|.++...+.....++- -.-.|+.||.| +-|+...
T Consensus 144 ------------~nv~vRVsvKG~dpesF~kIT~asp~~--F~~QL~aLr~L~~~g~rf~ 189 (228)
T COG5014 144 ------------LNVLVRVSVKGWDPESFEKITGASPEY--FRYQLKALRHLHGKGHRFW 189 (228)
T ss_pred ------------CCEEEEEEECCCCHHHHHHHHCCCHHH--HHHHHHHHHHHHHCCCEEE
T ss_conf ------------863999983579889989875689278--9999999999984671651
No 145
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=47.54 E-value=22 Score=16.40 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=44.3
Q ss_pred CCCCCEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCC--------CCHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHH
Q ss_conf 8988500000672266899999996-799869998683--------3000100012222222222345652-04899997
Q gi|254780765|r 22 RFPKKILADINGLPMILHTAIRARK-ANIGRVIVAVDD--------TKINEIVLQAGFESVMTHTSHQSGS-DRIFEALN 91 (268)
Q Consensus 22 Rlp~K~L~~i~gkplI~~v~~~a~~-s~~~~viVaTdd--------~~I~~~~~~~g~~~i~t~~~~~~GT-dRi~ea~~ 91 (268)
|+|.|...+=+..+-+ +. -++.+++|+||. +++.+..++.|+++..-.+-..+-| +-+.++++
T Consensus 461 kvP~~iyf~~~~~~~l-------~~~~~~kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~ 533 (862)
T PRK13805 461 KLPKKIYFERGSLPYL-------LDEPGKKRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAE 533 (862)
T ss_pred ECCCEEEECCCHHHHH-------HHCCCCCEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 3697467567829999-------866899779998785187678899999999986983999669899939799999999
Q ss_pred HHCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 42233452100001522101000001
Q gi|254780765|r 92 IIDSDKKSQIIVNMQADIPNIEPEIL 117 (268)
Q Consensus 92 ~l~~~~~~d~vV~lqGD~Pli~~~~I 117 (268)
.+.. ..+|.||-|-|-+|+=-.+.|
T Consensus 534 ~~~~-~~~D~IIalGGGS~iDaAKai 558 (862)
T PRK13805 534 LMRS-FKPDTIIALGGGSPMDAAKIM 558 (862)
T ss_pred HHHH-CCCCEEEEECCCCHHHHHHHH
T ss_conf 9986-499999994783488999999
No 146
>KOG2978 consensus
Probab=45.01 E-value=24 Score=16.16 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHH-HCCC-CEEEEECCC-----CCHHHHC-CCCCCCCCCCCC-CCCCCCH-HHHHHHHHHCCCCCCCEE
Q ss_conf 7226689999999-6799-869998683-----3000100-012222222222-3456520-489999742233452100
Q gi|254780765|r 33 GLPMILHTAIRAR-KANI-GRVIVAVDD-----TKINEIV-LQAGFESVMTHT-SHQSGSD-RIFEALNIIDSDKKSQII 102 (268)
Q Consensus 33 gkplI~~v~~~a~-~s~~-~~viVaTdd-----~~I~~~~-~~~g~~~i~t~~-~~~~GTd-Ri~ea~~~l~~~~~~d~v 102 (268)
+.|++-|.+.... +++. -++|++-|. .++++.. +-+|..-|.-.+ ..+.|-. ....++++ ...+++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~----a~g~fi 92 (238)
T KOG2978 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKH----ATGDFI 92 (238)
T ss_pred CCEEEHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH----CCCCEE
T ss_conf 8716599987543553686479998389997609999999998589818998636766501787756654----368769
Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 001522101000001223332101344321111
Q gi|254780765|r 103 VNMQADIPNIEPEILASVLLPLQNPIVDIGTLG 135 (268)
Q Consensus 103 V~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~ 135 (268)
|...||-- -.|++|-++|+..++.++|++...
T Consensus 93 viMDaDls-HhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978 93 VIMDADLS-HHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEEECCCC-CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99807667-891567999998650575256630
No 147
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=44.59 E-value=12 Score=18.15 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=20.1
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 00000672266899999996799869998
Q gi|254780765|r 27 ILADINGLPMILHTAIRARKANIGRVIVA 55 (268)
Q Consensus 27 ~L~~i~gkplI~~v~~~a~~s~~~~viVa 55 (268)
|=..|.+..-||-|++.|-+.. +.||+|
T Consensus 19 PAFNIHNlET~QvvvEtAAel~-SPVIlA 46 (282)
T TIGR01858 19 PAFNIHNLETIQVVVETAAELR-SPVILA 46 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 6400212899999999986227-883640
No 148
>pfam07788 DUF1626 Protein of unknown function (DUF1626). This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaebacteria. One member is thought to be similar to tropomyosin.
Probab=43.48 E-value=18 Score=16.95 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=23.9
Q ss_pred CCCCHHHH---HHHHHHHCCCCEEEEECC--CCCHHHHCCCCCCC
Q ss_conf 67226689---999999679986999868--33000100012222
Q gi|254780765|r 32 NGLPMILH---TAIRARKANIGRVIVAVD--DTKINEIVLQAGFE 71 (268)
Q Consensus 32 ~gkplI~~---v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g~~ 71 (268)
++.+.+++ -|+++..-+.++++|.|+ |++..+.|++.|++
T Consensus 26 ~Dv~~~~rK~~~Yek~~grk~~rlivItP~id~ra~~~A~~LGIe 70 (70)
T pfam07788 26 GDLAVIKRKGELYEKAKGRKVDRLIVVTPFIDDRARAMAKDLGIE 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 335999999999999868877628998466597899999982989
No 149
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420 This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=43.15 E-value=26 Score=15.98 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHCCCC-CCCCCCCCCCC
Q ss_conf 885000006722668999999967998699986--833000100012-22222222234
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAV--DDTKINEIVLQA-GFESVMTHTSH 79 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaT--dd~~I~~~~~~~-g~~~i~t~~~~ 79 (268)
|||=+.=+.-..-.++.-...+..++++||+.+ +.++=.|+|++- +++||.|...|
T Consensus 158 PGKD~~F~DEI~~~~~~~~~l~QQG~NKIILLSHAG~EKN~EIAQ~~~~IDVIV~GD~H 216 (550)
T TIGR01530 158 PGKDVKFIDEIEAVRIAAVELKQQGVNKIILLSHAGFEKNIEIAQKVSDIDVIVSGDSH 216 (550)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCCCEEEEEECCEE
T ss_conf 78865156578999999998763784346653117862240200142660079857702
No 150
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=43.06 E-value=26 Score=15.97 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=28.5
Q ss_pred CEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 50000067226689999999679986999868330
Q gi|254780765|r 26 KILADINGLPMILHTAIRARKANIGRVIVAVDDTK 60 (268)
Q Consensus 26 K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~ 60 (268)
..+..++..+++.|+-+-+.-...+.|+||+++++
T Consensus 10 ~~~~~i~n~~l~~wi~ev~~l~~P~~V~~cdGS~e 44 (608)
T COG1274 10 DKLAPINNQGLKSWIEEVAELTEPDDVVVCDGSPE 44 (608)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 23222225779999999998659772999489879
No 151
>PRK13122 consensus
Probab=42.77 E-value=26 Score=15.94 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=56.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCCCCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 006722668999999967998--699986833000100012222-2222223--45652048999974223345210000
Q gi|254780765|r 30 DINGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVLQAGFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 30 ~i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~~~g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
+++.=|.|+...+||++.+.+ +++ +.+.+..++.+.. ++||.-+ +..|.++..+.++....+ .-+|
T Consensus 39 P~ADGpvIQ~A~~rAL~~G~~~~~~~-----~~l~~~r~~~~~pivlM~Y~N~i~~~G~~~F~~~~~~~Gvd--GvIi-- 109 (242)
T PRK13122 39 PVADGPVIMEAGQQAIKQGITIDYIF-----NQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVY--GLII-- 109 (242)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHH-----HHHHHHCCCCCCCEEEEEECHHHHHHCHHHHHHHHHHCCCC--EEEC--
T ss_conf 66658999999999997699899999-----99997313679877999851698872799999999876998--6777--
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
Q ss_conf 1522101000001223332101344321111112201100
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDP 144 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~ 144 (268)
.|-|+-.. ..+.....+.+.+...+++|.+.++.+
T Consensus 110 --pDLP~ee~---~~~~~~~~~~gi~~I~lvaPtt~~~Ri 144 (242)
T PRK13122 110 --PDLPYELS---QRLKQQFSHYGVKIISLVAMTTDDKRI 144 (242)
T ss_pred --CCCCHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf --89987889---999999986798689871899989999
No 152
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=42.74 E-value=26 Score=15.94 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=66.3
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 99974223345210000152210100000122333210-13443211111122011003754431465145444200111
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~al 166 (268)
.++...-...++++|+.+-+|.- ++|+.|..++..|. +++...++....+.++. .|..-.. +.-+- ....
T Consensus 63 ~al~~~~~~~~~e~v~~vDaDt~-~~~~al~~lv~~f~~dp~vgaV~G~i~v~n~~----~~~l~~~--q~~EY--~~~~ 133 (244)
T cd04190 63 NYFCRVLFPDDPEFILLVDADTK-FDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKK----QGPLVMY--QVFEY--AISH 133 (244)
T ss_pred HHHHHHHHHCCCEEEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEEEEECCCC----CCHHHHH--HHHHH--HHHH
T ss_conf 99998875059809999907998-18579999999996399837887668965788----8889999--99999--9999
Q ss_pred HCCCCCCCCCCCCCCCCEE-EEEEEHHHHHHHHCCCC---------C---------CCHHHCCHH-HHHHHHCCCEEEEE
Q ss_conf 1035777531112235201-35520023333320799---------8---------211120844-79899789626699
Q gi|254780765|r 167 YFTRTKTPHGTGPFYQHLG-IYAYRREALKRFTQLSP---------S---------VLEQRESLE-QLRALEARMRIDVK 226 (268)
Q Consensus 167 yfsR~~ip~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~---------t---------~lE~~E~lE-qLR~leng~~I~~~ 226 (268)
++.|+.-. .-+.+.-.-| +.+|++++|.+...... . .....|+.+ -++++..|++.+++
T Consensus 134 ~~~r~~~s-~~G~v~~~pGa~s~yR~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEDr~Lt~~l~~~g~~~~~~ 212 (244)
T cd04190 134 WLDKAFES-VFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYL 212 (244)
T ss_pred HHHHHHHH-HCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHCCCCHHCHHHHHHHHHHHCCCCEEE
T ss_conf 98899998-67998971781255209988734787444110022333101333211110211099999999828873488
Q ss_pred EECCCCCCCCCHHHHHH
Q ss_conf 84588887689999999
Q gi|254780765|r 227 IVQSNAMSVDTTNDLEK 243 (268)
Q Consensus 227 ~~~~~~~~IDt~~Dl~~ 243 (268)
..+.-.---+.|+.+..
T Consensus 213 y~p~A~~~T~~P~t~~~ 229 (244)
T cd04190 213 YVPGAVAETDVPETFVE 229 (244)
T ss_pred ECCCCEEEEECCCCHHH
T ss_conf 74573899989828999
No 153
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family. .
Probab=42.26 E-value=27 Score=15.89 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHC--CCCEEEEEC----------CCCCHHHHCCCCCCCCCCCCCCCCCC-CH--HHHHHHHHHCCCCCC
Q ss_conf 2668999999967--998699986----------83300010001222222222234565-20--489999742233452
Q gi|254780765|r 35 PMILHTAIRARKA--NIGRVIVAV----------DDTKINEIVLQAGFESVMTHTSHQSG-SD--RIFEALNIIDSDKKS 99 (268)
Q Consensus 35 plI~~v~~~a~~s--~~~~viVaT----------dd~~I~~~~~~~g~~~i~t~~~~~~G-Td--Ri~ea~~~l~~~~~~ 99 (268)
|-+.=-+++++.. |.. +.|+. |+.++.-+.+..|+.++....+-..+ -| .+.+|...++.....
T Consensus 55 P~l~~w~E~~k~~yPG~~-l~ivSN~~~~~~yD~D~~r~k~~~~~lgI~~~~~a~Kp~~~Gdeim~~~~A~~~~~l~s~~ 133 (196)
T TIGR01668 55 PELREWIEELKAAYPGLK-LLIVSNNAGLLEYDKDESRVKALEKELGIPVLLHAVKPPGKGDEIMAFRRALKEMGLTSSE 133 (196)
T ss_pred HHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 366788999985379957-9998768765431201478888887518851147788788833789999998751798732
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 1000015221010000012233321013443211111122011003
Q gi|254780765|r 100 QIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPD 145 (268)
Q Consensus 100 d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~ 145 (268)
+++| + ||.|+.|-- . -+-....+.++.++..++...
T Consensus 134 ~~~v-v-GDrL~TDv~-----~---gNr~G~~tIlv~p~~~p~~~f 169 (196)
T TIGR01668 134 QVVV-V-GDRLFTDVL-----G---GNRNGFYTILVEPLVHPDEAF 169 (196)
T ss_pred CEEE-E-CCCCHHHHH-----H---HHHCCCEEEEECCCCCCHHHH
T ss_conf 3788-7-895146788-----6---532472347851255501577
No 154
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=41.44 E-value=28 Score=15.81 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred EEEEECCCC--CH--------HHHCCCCCCC--C-CCCCCCC---CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 699986833--00--------0100012222--2-2222234---56520489999742233452100001522101000
Q gi|254780765|r 51 RVIVAVDDT--KI--------NEIVLQAGFE--S-VMTHTSH---QSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEP 114 (268)
Q Consensus 51 ~viVaTdd~--~I--------~~~~~~~g~~--~-i~t~~~~---~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~ 114 (268)
+++|..|+. +| .+.|++.+.. + +.++++. +.|. +.++++... .++++++.|-+|. ...+
T Consensus 36 ~v~vLsDs~~p~~~~~E~~a~~~l~~~~~~~~~v~Yr~R~~n~g~KAGn--i~~~l~~~g--~~yd~~~vlDAD~-~~~~ 110 (254)
T cd04191 36 DFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAGN--IADFCRRWG--SRYDYMVVLDADS-LMSG 110 (254)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH--HHHHHHHCC--CCCCEEEEECCCC-CCCH
T ss_conf 7999808997578999999999999984788745988568667987377--999999539--9846799975888-9986
Q ss_pred CHHHHHHHHHC-CCCCCCC-CCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHH---CCCCCC--CCCCCCCCCCEEEE
Q ss_conf 00122333210-1344321-11111220110037544314651454442001111---035777--53111223520135
Q gi|254780765|r 115 EILASVLLPLQ-NPIVDIG-TLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALY---FTRTKT--PHGTGPFYQHLGIY 187 (268)
Q Consensus 115 ~~Id~~i~~~~-~~~~dv~-tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~aly---fsR~~i--p~~~~~~~~hvGIy 187 (268)
+.|..++..|. +++..++ |+...+ +.+.+ +..- -+....+| |.+..- .-...+++-|..|
T Consensus 111 d~l~~lv~~~e~dp~~glVQt~~~~~-n~~s~---------~~r~--~qf~~~~~~~~~~~G~~~w~~~~~~f~GhnAI- 177 (254)
T cd04191 111 DTIVRLVRRMEANPRAGIIQTAPKLI-GAETL---------FARL--QQFANRLYGPVFGRGLAAWQGGEGNYWGHNAI- 177 (254)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCC-CCCCH---------HHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE-
T ss_conf 99999999997698868972897464-88788---------9998--88999860199875687752553344673146-
Q ss_pred EEEHHHHHHHHCCCC----CC---CHHHCC-HHHHHHHHCCCEEEEEEE
Q ss_conf 520023333320799----82---111208-447989978962669984
Q gi|254780765|r 188 AYRREALKRFTQLSP----SV---LEQRES-LEQLRALEARMRIDVKIV 228 (268)
Q Consensus 188 ~f~~~~L~~~~~l~~----t~---lE~~E~-lEqLR~leng~~I~~~~~ 228 (268)
+++..+.+.+.|+. .+ --..|+ .|.+++-..|+++...+.
T Consensus 178 -iR~~af~~~~glp~L~~~g~~~g~~lsED~~~a~~L~r~Gw~v~~~~~ 225 (254)
T cd04191 178 -IRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred -EEHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf -660877764176446788997886130579999999987998998125
No 155
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=40.44 E-value=28 Score=15.76 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=26.3
Q ss_pred CEEEEECC---------CCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 86999868---------33000100012222222222345652048999974223345210000
Q gi|254780765|r 50 GRVIVAVD---------DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 50 ~~viVaTd---------d~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
.+|+||.+ .+++.++|+++|+++-++.- ++.|+....+ ++|++|-
T Consensus 3 KkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~-------~i~ev~~~~~---~~Dlivt 56 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC-------RVNEIETYMD---GVHLICT 56 (94)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-------EHHHHHHCCC---CCCEEEE
T ss_conf 5599985883759999999999999985980689997-------4787554168---9778999
No 156
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=38.88 E-value=30 Score=15.56 Aligned_cols=192 Identities=11% Similarity=0.146 Sum_probs=99.9
Q ss_pred ECCCCCCC--HHHHHHHHHHHCCC--C--EEEEECCC--CCHHHHCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHCCC
Q ss_conf 00006722--66899999996799--8--69998683--3000100012222222222345---6520489999742233
Q gi|254780765|r 28 LADINGLP--MILHTAIRARKANI--G--RVIVAVDD--TKINEIVLQAGFESVMTHTSHQ---SGSDRIFEALNIIDSD 96 (268)
Q Consensus 28 L~~i~gkp--lI~~v~~~a~~s~~--~--~viVaTdd--~~I~~~~~~~g~~~i~t~~~~~---~GTdRi~ea~~~l~~~ 96 (268)
+.+--+.| ++..++-.|+.... + +|+|.-|. +++.++|++.|+..+ |++++. -|. +.+|++..
T Consensus 278 fIPTYNEp~~vvr~Ti~aa~~iDYP~dKl~VyvLDDG~R~e~r~lAeelGv~Yi-tR~~N~HAKAGN--LNhAL~~T--- 351 (858)
T PRK11498 278 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVGYI-ARPTHEHAKAGN--INNALKYA--- 351 (858)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHHCCCEE-ECCCCCCCCCCC--HHHHHHHC---
T ss_conf 764589988999999999982899801176999329999899999998599767-368886664226--78888645---
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCC--CCCHHHCCCCCC--CEEEEECCCCCCCHHHHHCCCC
Q ss_conf 4521000015221010000012233321-0134432111111--220110037544--3146514544420011110357
Q gi|254780765|r 97 KKSQIIVNMQADIPNIEPEILASVLLPL-QNPIVDIGTLGTR--IHGSTDPDDPNI--VKIVVASPSENGCFRALYFTRT 171 (268)
Q Consensus 97 ~~~d~vV~lqGD~Pli~~~~Id~~i~~~-~~~~~dv~tl~~~--~~~~~~~~d~n~--vKvi~~~~~~~~~~~alyfsR~ 171 (268)
+.++|+.+.+|.- =.++.+.+.+-.| .+++...+ -+| +.+++-+. .|- -+.+.+. .. .|.+-
T Consensus 352 -~GelVaIfDADhV-P~r~FL~rTvG~Fl~DpklalV--QTPq~FyNpDPfq-rNLg~~~~~P~E-------~e-lFY~~ 418 (858)
T PRK11498 352 -KGEFVAIFDCDHV-PTRSFLQMTMGWFLKDKKLAMM--QTPHHFFSPDPFE-RNLGRFRKTPNE-------GT-LFYGL 418 (858)
T ss_pred -CCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCHHH-HHCCCCCCCCCC-------HH-HHHHH
T ss_conf -8878999638888-7478999866877228864898--6883337998254-412245788982-------66-78898
Q ss_pred CCCCCC--CCCCCCEE-EEEEEHHHHHHHHCCC-CCCCHHHCCH-HHHHHHHCCCEEEEEEEC-CCCCCCCCHHHHH
Q ss_conf 775311--12235201-3552002333332079-9821112084-479899789626699845-8888768999999
Q gi|254780765|r 172 KTPHGT--GPFYQHLG-IYAYRREALKRFTQLS-PSVLEQRESL-EQLRALEARMRIDVKIVQ-SNAMSVDTTNDLE 242 (268)
Q Consensus 172 ~ip~~~--~~~~~hvG-Iy~f~~~~L~~~~~l~-~t~lE~~E~l-EqLR~leng~~I~~~~~~-~~~~~IDt~~Dl~ 242 (268)
.-|-.. +..+ .+| ...+++++|.+..... .| ..|+. -.||.-..|++...+... ..+.+-.+-.++.
T Consensus 419 IQ~g~D~wnAaf-fCGS~AVlRR~AL~eIGGfateT---VTED~~Tal~Lh~~Gy~S~Yl~e~LaaGLApEsls~~i 491 (858)
T PRK11498 419 VQDGNDMWDATF-FCGSCAVIRRKPLDEIGGIAVET---VTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHI 491 (858)
T ss_pred HCCCCCCCCEEE-EECCHHHHHHHHHHHHCCCCCCE---ECCCHHHHHHHHHCCCEEEECCHHHHCCCCCCCHHHHH
T ss_conf 638643457069-96307999799999828954640---33008889999977980775073876768812389999
No 157
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=38.22 E-value=31 Score=15.50 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 88500000672266899999996799869998683300010001222222222234565204899997422334521000
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
||....-++.=|+=...+.-|+..+..+|+++.-+++=.+.++++|+..++.. ++.+ ..+.+..+-....+|+++
T Consensus 176 ~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~~i~~----~~~~-~~~~v~~~t~g~G~Dvvi 250 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS----SGTD-PVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEECC----CCCC-HHHHHHHHHCCCCCCEEE
T ss_conf 99889996737699999999998399189999198899999996599099739----9878-899999985898874999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 01522101000001223332101
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
.--| .+..++..+.....
T Consensus 251 e~~G-----~~~~~~~al~~~~~ 268 (358)
T TIGR03451 251 DAVG-----RPETYKQAFYARDL 268 (358)
T ss_pred ECCC-----CHHHHHHHHHHHCC
T ss_conf 9999-----98999999997627
No 158
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.16 E-value=31 Score=15.49 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=16.0
Q ss_pred CCEEEEECC------CCCHHHHCCCCCCCCCCCC
Q ss_conf 986999868------3300010001222222222
Q gi|254780765|r 49 IGRVIVAVD------DTKINEIVLQAGFESVMTH 76 (268)
Q Consensus 49 ~~~viVaTd------d~~I~~~~~~~g~~~i~t~ 76 (268)
.|=|++.|| -..+.++|++.|..+++.+
T Consensus 47 aDlVI~~td~vsH~~~~~vK~~akk~~~p~v~~~ 80 (96)
T pfam10087 47 ADLVIVFTDCVSHDAMWRVKEEAKKRGIPVVFSR 80 (96)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8889997176687999999999998499789976
No 159
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=37.12 E-value=32 Score=15.39 Aligned_cols=157 Identities=14% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHC-C-CCEEEEEC----CCC-C-HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 6722668999999967-9-98699986----833-0-0010001222222222234565204899997422334521000
Q gi|254780765|r 32 NGLPMILHTAIRARKA-N-IGRVIVAV----DDT-K-INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s-~-~~~viVaT----dd~-~-I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
+....|..+++..... . ..+|+|+- |+. + +.++..+..+.+...... ..|- +.+.|.+..-.....++|+
T Consensus 7 N~~~~L~~~L~Sl~~Qt~~~~EIIvvDd~StD~t~~~~~~~~~~~~~~i~~~~~~-~~g~-~~~~arN~gi~~a~g~~i~ 84 (182)
T cd06420 7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DEGF-RKAKIRNKAIAAAKGDYLI 84 (182)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC-CCCH-HHHHHHHHHHHHCCCCEEE
T ss_conf 9889999999999837999958999979996148999999985188741000100-5672-6899999999855887288
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 01522101000001223332101344321111112201100375443146514544420011110357775311122352
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQH 183 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~h 183 (268)
.+-+|+ ...|+.|....+....+.+ +. .. .+..+... ++. .+.
T Consensus 85 flD~D~-~~~~~~i~~~~~~~~~~~~-~~--g~--------------~~~~~~~~----------~~~--------~~~- 127 (182)
T cd06420 85 FIDGDC-IPHPDFIADHIELAEPGVF-LS--GS--------------RVLLNEKL----------TER--------GIR- 127 (182)
T ss_pred EECCCC-CCCCHHHHHHHHHHCCCEE-EE--CC--------------EEEECCCC----------CCC--------CCC-
T ss_conf 878983-2791099999997089908-98--61--------------68717534----------526--------402-
Q ss_pred EEEEEEEHHHHHHHHCCCCCCCH-HHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 01355200233333207998211-120844-798997896266998
Q gi|254780765|r 184 LGIYAYRREALKRFTQLSPSVLE-QRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 184 vGIy~f~~~~L~~~~~l~~t~lE-~~E~lE-qLR~leng~~I~~~~ 227 (268)
-|-.+|+++.+.+...+.+.-.- -.|+.| .+|+..+|++++.++
T Consensus 128 ~~~~~~~r~~~~~vGgfde~~~~~g~ED~Dl~~Rl~~~G~k~~~~~ 173 (182)
T cd06420 128 GCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLK 173 (182)
T ss_pred EEEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf 4489999999998589970027899779999999998299999616
No 160
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010197 This entry describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Also included are enzymes with the common name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase . Members are restricted to the are low GC Gram-positive bacteria and archaea. .
Probab=36.92 E-value=27 Score=15.86 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 6899999999999730
Q gi|254780765|r 235 VDTTNDLEKVRTLIPH 250 (268)
Q Consensus 235 IDt~~Dl~~v~~il~~ 250 (268)
+|.|-|+.-.++++..
T Consensus 303 ~~~pGD~s~~~~YF~~ 318 (326)
T TIGR01928 303 VDYPGDVSPSEKYFDE 318 (326)
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 8777503853001100
No 161
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=36.40 E-value=33 Score=15.32 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=9.6
Q ss_pred EEEEECCCCCHHHHCCCCCCCCC
Q ss_conf 69998683300010001222222
Q gi|254780765|r 51 RVIVAVDDTKINEIVLQAGFESV 73 (268)
Q Consensus 51 ~viVaTdd~~I~~~~~~~g~~~i 73 (268)
+|-|=|.+++ ++.|+..|+++|
T Consensus 72 RVaVfa~G~~-~~eA~~AGAD~V 93 (227)
T TIGR01169 72 RVAVFAKGEK-AKEAKAAGADYV 93 (227)
T ss_pred EEEEECCCHH-HHHHHHCCCEEE
T ss_conf 8999716434-888987098044
No 162
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=35.65 E-value=33 Score=15.35 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2668999999967998699986
Q gi|254780765|r 35 PMILHTAIRARKANIGRVIVAV 56 (268)
Q Consensus 35 plI~~v~~~a~~s~~~~viVaT 56 (268)
-|+++...+|+..++.++|+.|
T Consensus 85 ~Ll~~~~~~Ar~~gi~~~f~LT 106 (153)
T COG1246 85 RLLERLLADARELGIKELFVLT 106 (153)
T ss_pred HHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999998874970134331
No 163
>TIGR00608 radc DNA repair protein RadC; InterPro: IPR001405 RadC is a DNA repair protein found in many bacteria. They share a region of similarity at the C-terminus that contains two perfectly conserved histidine residues.; GO: 0006281 DNA repair.
Probab=34.78 E-value=27 Score=15.88 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=24.9
Q ss_pred EEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCC--CCCH--HHHHHHHHHHH
Q ss_conf 3552002333332079982111208447989978962669984588887--6899--99999999973
Q gi|254780765|r 186 IYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMS--VDTT--NDLEKVRTLIP 249 (268)
Q Consensus 186 Iy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~--IDt~--~Dl~~v~~il~ 249 (268)
+..|.|+++++=..+.-+-+ +.+-+.+=| .=|| +|...=+++.+
T Consensus 147 v~v~PREi~keA~k~~A~al--------------------I~aHNHPSGGl~p~PS~~D~~~T~~l~~ 194 (223)
T TIGR00608 147 VLVHPREIIKEALKLSASAL--------------------ILAHNHPSGGLEPSPSKEDILITERLLK 194 (223)
T ss_pred EEECCCHHHHHHHHHCCCCE--------------------EEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 23665078778876174302--------------------5565375529899868777999999998
No 164
>TIGR00016 ackA acetate kinase; InterPro: IPR004372 Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate.; GO: 0016301 kinase activity, 0016774 phosphotransferase activity carboxyl group as acceptor, 0006082 organic acid metabolic process.
Probab=34.70 E-value=8.8 Score=18.90 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=47.9
Q ss_pred CCCCC-----CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHC-------------CCCCCCEEEEECCCCCCCHHHH
Q ss_conf 15221-----01000001223332101344321111112201100-------------3754431465145444200111
Q gi|254780765|r 105 MQADI-----PNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDP-------------DDPNIVKIVVASPSENGCFRAL 166 (268)
Q Consensus 105 lqGD~-----Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~-------------~d~n~vKvi~~~~~~~~~~~al 166 (268)
|||=+ -+|+++.|+++-+.- ...|+|||.++ .+|+++=.=|....+-.....|
T Consensus 105 VHGG~~f~~Svi~t~e~~~~I~~~~---------~LAPLHNpa~l~gIe~~~~~~~~~~~k~VaVFDTaFHqTip~eayL 175 (416)
T TIGR00016 105 VHGGEKFTDSVIITDEVIKKIKDIS---------ELAPLHNPAHLDGIEAALKLKVLPKAKNVAVFDTAFHQTIPEEAYL 175 (416)
T ss_pred EECCCCCCCCEEECHHHHHHHHHHH---------HHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 7276432222553689999999898---------5068678124799999997203678871688638636577751102
Q ss_pred HCCCCCCCCCCCCCCCCEEE--EEEE---HHHHHHHHCCCCCCCHHH-CCHHHHHHH----HCCCEEEEEEECCCCCCCC
Q ss_conf 10357775311122352013--5520---023333320799821112-084479899----7896266998458888768
Q gi|254780765|r 167 YFTRTKTPHGTGPFYQHLGI--YAYR---REALKRFTQLSPSVLEQR-ESLEQLRAL----EARMRIDVKIVQSNAMSVD 236 (268)
Q Consensus 167 yfsR~~ip~~~~~~~~hvGI--y~f~---~~~L~~~~~l~~t~lE~~-E~lEqLR~l----eng~~I~~~~~~~~~~~ID 236 (268)
| ++||. +|+-.|| |+|+ ..|..+... |.. -.+++|++| -||-.|-++. ++-|||
T Consensus 176 Y----alPy~---~y~~~giRrYGFHGTSh~Yv~~~~~------~~Lnkp~~~l~LI~cHLGNGAS~~Avk---nGkS~D 239 (416)
T TIGR00016 176 Y----ALPYS---WYKEHGIRRYGFHGTSHKYVTQRAA------KLLNKPLDDLNLIVCHLGNGASVCAVK---NGKSID 239 (416)
T ss_pred C----CCHHH---HHHHCCCEECCCCCCCHHHHHHHHH------HHHCCCHHHCCEEEEEECCCCEEEEEE---CCEEEC
T ss_conf 4----45189---9986494010654664899989999------971781013681899726881687782---775462
Q ss_pred C
Q ss_conf 9
Q gi|254780765|r 237 T 237 (268)
Q Consensus 237 t 237 (268)
|
T Consensus 240 T 240 (416)
T TIGR00016 240 T 240 (416)
T ss_pred C
T ss_conf 5
No 165
>PRK07062 short chain dehydrogenase; Provisional
Probab=34.66 E-value=35 Score=15.15 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCCCEECCCCCCCHHHHHHHHHHH-CCCCEEEEEC-CCCCHHHHC
Q ss_conf 8988500000672266899999996-7998699986-833000100
Q gi|254780765|r 22 RFPKKILADINGLPMILHTAIRARK-ANIGRVIVAV-DDTKINEIV 65 (268)
Q Consensus 22 Rlp~K~L~~i~gkplI~~v~~~a~~-s~~~~viVaT-dd~~I~~~~ 65 (268)
+|.||...--+|-.-|.+.+-+... .+. +|+++- +.+++.+.+
T Consensus 5 ~L~gK~alITG~s~GIG~a~a~~la~~Ga-~Vvi~~r~~~~l~~~~ 49 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAE 49 (265)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
T ss_conf 88999899957577999999999998799-9999979889999999
No 166
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=34.55 E-value=35 Score=15.14 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=17.1
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 00006722668999999967998699986833
Q gi|254780765|r 28 LADINGLPMILHTAIRARKANIGRVIVAVDDT 59 (268)
Q Consensus 28 L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~ 59 (268)
+.++.+.-++.|+-+.+..+..++|++|++++
T Consensus 14 ~~~~~n~~l~~~v~e~~~l~~Pd~V~~cdGS~ 45 (610)
T PRK04210 14 PAPTKNPKLLEWVAEVAELTQPDRVVWCDGSE 45 (610)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 56678989999999999865998799848999
No 167
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.26 E-value=36 Score=15.11 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=14.4
Q ss_pred CCCHHHHC-CCCCCCCCCCCCCCCCCCH
Q ss_conf 33000100-0122222222223456520
Q gi|254780765|r 58 DTKINEIV-LQAGFESVMTHTSHQSGSD 84 (268)
Q Consensus 58 d~~I~~~~-~~~g~~~i~t~~~~~~GTd 84 (268)
+++|+++| .+||..+.|.++-.-+|.+
T Consensus 76 ~eEI~~fC~~~YgVtFp~f~Ki~VnG~~ 103 (162)
T COG0386 76 DEEIAKFCQLNYGVTFPMFSKIDVNGKN 103 (162)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCC
T ss_conf 7999999875569645514677626998
No 168
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701 Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 . These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination . For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=33.92 E-value=36 Score=15.07 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCHHHHCCCCCCCCCCCCCC--CCCCCHH--HHHHHHHHCC
Q ss_conf 30001000122222222223--4565204--8999974223
Q gi|254780765|r 59 TKINEIVLQAGFESVMTHTS--HQSGSDR--IFEALNIIDS 95 (268)
Q Consensus 59 ~~I~~~~~~~g~~~i~t~~~--~~~GTdR--i~ea~~~l~~ 95 (268)
+||.++|++....=|+.++| |.|-=+| .+.|++.|..
T Consensus 32 ~Evl~iA~~~~VDMvllgGDLFH~NkPSrk~lYqvl~~LR~ 72 (424)
T TIGR00583 32 EEVLQIAKEQDVDMVLLGGDLFHENKPSRKSLYQVLRSLRL 72 (424)
T ss_pred HHHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 89999975089678985681642458407899999999987
No 169
>PRK13138 consensus
Probab=33.17 E-value=37 Score=15.00 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHCCC--CEEEEECCCCCHHHHCCCC--CCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0672266899999996799--8699986833000100012--222-2222223--4565204899997422334521000
Q gi|254780765|r 31 INGLPMILHTAIRARKANI--GRVIVAVDDTKINEIVLQA--GFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~--~~viVaTdd~~I~~~~~~~--g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
++.=|.|++...||++.+. ++++ ++....++. ... ++||.-+ +..|-||..+.++...-+ -++
T Consensus 54 ~ADGPvIq~A~~rAL~~G~~~~~~~------~~~~~ir~~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gvd----GlI 123 (264)
T PRK13138 54 VADGPVIQKAFKRALAHPFSMDKIL------EITAEIHKLHPEIPLVYLTYFNPLFSMGLEAFTERAKNSGIQ----GLI 123 (264)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHCCCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCC----EEE
T ss_conf 6658999999999997799088974------467760335898888975212389884899999999876977----585
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 0152210100000122333210134432111111220110
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD 143 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~ 143 (268)
. .|-|+= +..-..+....++.+.+...+++|.+..+.
T Consensus 124 i--pDLP~e-~~E~~~~~~~~~~~~i~~I~liaPtt~~~R 160 (264)
T PRK13138 124 I--PDLPFD-TPEAEEFFSQLERKKIDFIHLVTPATTEDR 160 (264)
T ss_pred C--CCCCCC-CHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 3--689865-033599999999869986752179998999
No 170
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=32.47 E-value=38 Score=14.92 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCC-H-HHHCCCCCC
Q ss_conf 226689999999679986999868330-0-010001222
Q gi|254780765|r 34 LPMILHTAIRARKANIGRVIVAVDDTK-I-NEIVLQAGF 70 (268)
Q Consensus 34 kplI~~v~~~a~~s~~~~viVaTdd~~-I-~~~~~~~g~ 70 (268)
+|=+...++.|+.+|+ +|++.|+|.+ = .-.|++-|+
T Consensus 468 R~EV~~ai~~CR~AGI-rVImITGD~KeTA~AicR~IG~ 505 (800)
T TIGR01116 468 RPEVADAIEKCREAGI-RVIMITGDNKETAEAICRRIGI 505 (800)
T ss_pred CHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHHHHH
T ss_conf 1689999998873797-8999847982468999767501
No 171
>pfam03465 eRF1_3 eRF1 domain 3. The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits exper
Probab=30.79 E-value=41 Score=14.75 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=24.5
Q ss_pred HHHHHCC-CCEEEEECC-----C-------CCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999679-986999868-----3-------3000100012222222222345652
Q gi|254780765|r 42 IRARKAN-IGRVIVAVD-----D-------TKINEIVLQAGFESVMTHTSHQSGS 83 (268)
Q Consensus 42 ~~a~~s~-~~~viVaTd-----d-------~~I~~~~~~~g~~~i~t~~~~~~GT 83 (268)
.+|...+ ++.++|+.+ + .++.+.+++.|+++.+-+.+|..|.
T Consensus 30 ~~Ale~GAve~Llisd~l~r~~~~~~r~~i~~l~e~~~~~g~~V~iiS~~~~~G~ 84 (100)
T pfam03465 30 LKALEMGAVETLLISDELLRSRDVATRNKIEWLVENAEESGGKVEIVSDESEEGE 84 (100)
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 9999839970999845233335478758999999999973999999899986578
No 172
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=30.76 E-value=41 Score=14.75 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999973
Q gi|254780765|r 236 DTTNDLEKVRTLIP 249 (268)
Q Consensus 236 Dt~~Dl~~v~~il~ 249 (268)
-+|+|+..+-.+|-
T Consensus 225 g~p~diA~~v~fL~ 238 (259)
T PRK12384 225 CDYQDVLNMLLFYA 238 (259)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 69999999999995
No 173
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=30.48 E-value=41 Score=14.72 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCEEE-EECC---CC-CHHHHCCCCCC-CCCCCCCCCCC
Q ss_conf 68999999967998699-9868---33-00010001222-22222223456
Q gi|254780765|r 37 ILHTAIRARKANIGRVI-VAVD---DT-KINEIVLQAGF-ESVMTHTSHQS 81 (268)
Q Consensus 37 I~~v~~~a~~s~~~~vi-VaTd---d~-~I~~~~~~~g~-~~i~t~~~~~~ 81 (268)
++.+++||+..++..|+ |+|+ -. +..+.++++.+ .++.|-+=|.+
T Consensus 20 ~~~v~~ra~~~~v~~~v~vg~~l~~~~W~~~~l~~~~~g~~v~~~~G~HP~ 70 (269)
T TIGR00010 20 VEEVIERAKAEGVTAVVDVGTDLEDLNWRALELAEKYPGDNVYAAVGVHPL 70 (269)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 899999999749929997346700206999999984799769998226872
No 174
>KOG2367 consensus
Probab=29.26 E-value=43 Score=14.59 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHCC-C-CEEEEECCC-----------CC-------HHHHCCCCCCCCCCCCCCCCCCCHH-----H
Q ss_conf 67226689999999679-9-869998683-----------30-------0010001222222222234565204-----8
Q gi|254780765|r 32 NGLPMILHTAIRARKAN-I-GRVIVAVDD-----------TK-------INEIVLQAGFESVMTHTSHQSGSDR-----I 86 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~-~-~~viVaTdd-----------~~-------I~~~~~~~g~~~i~t~~~~~~GTdR-----i 86 (268)
+-+++|.+++++.+..+ . -.+|++|.+ ++ ..+++++.|..-+--+++...-||+ +
T Consensus 130 c~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI 209 (560)
T KOG2367 130 CHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEI 209 (560)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 25578999999851467652799962559899988446699999999999999986144137866222466758899999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99997422334521000015221010000012233321013
Q gi|254780765|r 87 FEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP 127 (268)
Q Consensus 87 ~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~ 127 (268)
.+++++... -.+++..+.-.-.|...-.+|..|+.+
T Consensus 210 ~~aV~Kag~-----~tvnipdTVgia~P~~y~dLI~y~~tn 245 (560)
T KOG2367 210 LGAVIKAGV-----TTVNIPDTVGIATPNEYGDLIEYLKTN 245 (560)
T ss_pred HHHHHHCCC-----CCCCCCCEECCCCHHHHHHHHHHHHCC
T ss_conf 999997088-----600676402036838899999999706
No 175
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.04 E-value=44 Score=14.56 Aligned_cols=86 Identities=8% Similarity=0.211 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCC--------CCHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCE
Q ss_conf 0672266899999996799869998683--------3000100012222222222345652-048999974223345210
Q gi|254780765|r 31 INGLPMILHTAIRARKANIGRVIVAVDD--------TKINEIVLQAGFESVMTHTSHQSGS-DRIFEALNIIDSDKKSQI 101 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~~viVaTdd--------~~I~~~~~~~g~~~i~t~~~~~~GT-dRi~ea~~~l~~~~~~d~ 101 (268)
+.|.--+..+-+.++..+..++.|+||. +++.+..++.|+++..-++-..+-+ +-+.+++..+. ..+.|.
T Consensus 13 ~fG~g~~~~l~~~~~~~G~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r-~~~~D~ 91 (383)
T PRK09860 13 VIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLK-ENNCDS 91 (383)
T ss_pred EECCCHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH-HCCCCE
T ss_conf 9883899999999998299879998284566574699999999876995899689527969999999999998-739999
Q ss_pred EEECCCCCCCCCCCHH
Q ss_conf 0001522101000001
Q gi|254780765|r 102 IVNMQADIPNIEPEIL 117 (268)
Q Consensus 102 vV~lqGD~Pli~~~~I 117 (268)
||-|-|=+|+=..+-|
T Consensus 92 ivavGGGS~iD~AKai 107 (383)
T PRK09860 92 VISLGGGSPHDCAKGI 107 (383)
T ss_pred EEEECCCCHHHHHHHH
T ss_conf 9993896226789999
No 176
>PRK06500 short chain dehydrogenase; Provisional
Probab=28.27 E-value=45 Score=14.48 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=49.3
Q ss_pred CCCCCCEECCCCCCCHHHHHHHHHHHC-CCCEEEEE-CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf 889885000006722668999999967-99869998-683300010001222222222234565204899997422-334
Q gi|254780765|r 21 MRFPKKILADINGLPMILHTAIRARKA-NIGRVIVA-VDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIID-SDK 97 (268)
Q Consensus 21 ~Rlp~K~L~~i~gkplI~~v~~~a~~s-~~~~viVa-Tdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~-~~~ 97 (268)
.||.||.-.--+|-.-|.+.+-..... +.+ |+++ .+.+++.+..++.+.++..-.-+..+-. -+.+..+.+. ...
T Consensus 2 ~rl~gK~~lITGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~~~~~~~Dv~~~~-~~~~~~~~~~~~~g 79 (249)
T PRK06500 2 SRLQGKTALITGGTSGIGLETARQFAAEGAR-VAITGRDAATLEAARAELGEDALVIRNDAGSVA-AQRALAQALAEAGG 79 (249)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHCCCEEEEEEECCCHH-HHHHHHHHHHHHCC
T ss_conf 8989988999376878999999999987999-999969989999999985897599995179999-99999999999769
Q ss_pred CCCEEEECCCCCCCC
Q ss_conf 521000015221010
Q gi|254780765|r 98 KSQIIVNMQADIPNI 112 (268)
Q Consensus 98 ~~d~vV~lqGD~Pli 112 (268)
..|++|+=-|..++-
T Consensus 80 ~iDiLvnnAG~~~~~ 94 (249)
T PRK06500 80 RLDAVFINAGVAKFA 94 (249)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 998999899878999
No 177
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.21 E-value=45 Score=14.47 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred CEECCCCCCCHH---HHHHHHHHHCC-CCEEEEECCCC---CHHHH-CCCCCCC-------CCCCCCCCCCCCHHHHHHH
Q ss_conf 500000672266---89999999679-98699986833---00010-0012222-------2222223456520489999
Q gi|254780765|r 26 KILADINGLPMI---LHTAIRARKAN-IGRVIVAVDDT---KINEI-VLQAGFE-------SVMTHTSHQSGSDRIFEAL 90 (268)
Q Consensus 26 K~L~~i~gkplI---~~v~~~a~~s~-~~~viVaTdd~---~I~~~-~~~~g~~-------~i~t~~~~~~GTdRi~ea~ 90 (268)
|++.-+|-+|=+ .-++..+.+.+ ++.++|+|+-. +.-+. -..+++. +...++.+.--|.++-.++
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~ 84 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGL 84 (383)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHHHH
T ss_conf 89999855899998709999998589973599970665427789999998289888831321666888899999999999
Q ss_pred HHHCCCCCCCEEEECCCCC
Q ss_conf 7422334521000015221
Q gi|254780765|r 91 NIIDSDKKSQIIVNMQADI 109 (268)
Q Consensus 91 ~~l~~~~~~d~vV~lqGD~ 109 (268)
..+-...++|. |.|+||-
T Consensus 85 ~~vl~~~kPD~-VlVhGDT 102 (383)
T COG0381 85 SKVLEEEKPDL-VLVHGDT 102 (383)
T ss_pred HHHHHHHCCCE-EEEECCC
T ss_conf 99998629998-9991785
No 178
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980 Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli . From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process.
Probab=27.94 E-value=46 Score=14.44 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=36.4
Q ss_pred CEEEEECCCC-CHHHHCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHCCCCCCCEEEECCCCC--CCCCCCHHHHHH
Q ss_conf 8699986833-0001000122222222223456520489-----9997422334521000015221--010000012233
Q gi|254780765|r 50 GRVIVAVDDT-KINEIVLQAGFESVMTHTSHQSGSDRIF-----EALNIIDSDKKSQIIVNMQADI--PNIEPEILASVL 121 (268)
Q Consensus 50 ~~viVaTdd~-~I~~~~~~~g~~~i~t~~~~~~GTdRi~-----ea~~~l~~~~~~d~vV~lqGD~--Pli~~~~Id~~i 121 (268)
.+|.|.+-+. -+.++|++.|+.++. |+ ..++||=-+ ..=+.|..+.+ . |.|-.+. -.+++..++.++
T Consensus 64 ~NV~V~~f~~~L~Vd~Ak~~~a~~iv-RG-lR~~~DFEYE~~~~~~N~~La~eie--T-VFL~~~~~~~~~SSs~Vke~~ 138 (163)
T TIGR01510 64 PNVEVDVFDGRLLVDYAKELGATFIV-RG-LRAVTDFEYELQMALMNQKLAPEIE--T-VFLMASPEYAAVSSSLVKEIA 138 (163)
T ss_pred CCEEEEECCCCEEEEEHHHCCCEEEE-EE-CCCCCHHHHHHHHHHHHHHHCCCCC--E-EEECCCCCHHHHHHHHHHHHH
T ss_conf 81489840671212101366870898-60-1476607899999999997557986--8-972787223666767888750
Q ss_pred H
Q ss_conf 3
Q gi|254780765|r 122 L 122 (268)
Q Consensus 122 ~ 122 (268)
.
T Consensus 139 ~ 139 (163)
T TIGR01510 139 S 139 (163)
T ss_pred C
T ss_conf 7
No 179
>pfam00799 Gemini_AL1 Geminivirus Rep catalytic domain. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.
Probab=27.59 E-value=35 Score=15.13 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=5.5
Q ss_pred CCCCCCCCCC
Q ss_conf 2222222345
Q gi|254780765|r 71 ESVMTHTSHQ 80 (268)
Q Consensus 71 ~~i~t~~~~~ 80 (268)
++++|-|.|.
T Consensus 7 n~FLTYPqC~ 16 (114)
T pfam00799 7 NVFLTYPRCS 16 (114)
T ss_pred EEEEECCCCC
T ss_conf 2887679999
No 180
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro: IPR010167 This entry represents a clade of amino-acid N-acetyltransferases, or N-acetylglutamate synthase, which is the product of the argA gene and the first enzyme in arginine biosynthesis. This enzyme displays more diversity between bacteria, fungi and mammals than other enzymes in arginine metabolism, and N-acetylglutamate itself can have different roles in different taxonomic groups: in prokaryotes, lower eukaryotes and plants it is the first intermediate in arginine biosynthesis, while in vertebrates it is an allosteric cofactor for the first enzyme in the urea cycle . In bacteria, arginine can regulate ornithine biosynthesis via a feedback inhibition mechanism . This enzyme may also act on aspartate.; GO: 0004042 amino-acid N-acetyltransferase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=27.24 E-value=35 Score=15.19 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 06722668999999967998699986
Q gi|254780765|r 31 INGLPMILHTAIRARKANIGRVIVAV 56 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~~viVaT 56 (268)
+.+..|.+=.-+.|.+.+.|+.+.-|
T Consensus 176 ~FnL~~e~vAt~~A~~L~AdKL~~~t 201 (439)
T TIGR01890 176 IFNLDMEDVATSVAIELKADKLIYFT 201 (439)
T ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 00440688999999862554045405
No 181
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.14 E-value=47 Score=14.35 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHHH-CCCCEEEEECC-------CC--CHHHHCCCCCCCCCCCCC-----CCCCCCHHHHHHH-HHH
Q ss_conf 00672266899999996-79986999868-------33--000100012222222222-----3456520489999-742
Q gi|254780765|r 30 DINGLPMILHTAIRARK-ANIGRVIVAVD-------DT--KINEIVLQAGFESVMTHT-----SHQSGSDRIFEAL-NII 93 (268)
Q Consensus 30 ~i~gkplI~~v~~~a~~-s~~~~viVaTd-------d~--~I~~~~~~~g~~~i~t~~-----~~~~GTdRi~ea~-~~l 93 (268)
-++|..=+...++.+.. -+.+-|.|.|. |+ .+....++.+.+++-.+. .+..|-+...+++ +.+
T Consensus 67 VfGg~~~L~~ai~~~~~~~~p~~I~V~tTc~se~IGdDi~~v~~~~~~~~~~vi~v~tpgf~Gs~~~G~~~a~~aiv~~~ 146 (427)
T cd01971 67 VFGGEDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQY 146 (427)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 24759999999999998479866999767758862676899999988659977982199752469999999999999985
Q ss_pred CCC--CCCCEEEECCCCCCCCCC---CHHHHHHHHHCCCCCCCCCC
Q ss_conf 233--452100001522101000---00122333210134432111
Q gi|254780765|r 94 DSD--KKSQIIVNMQADIPNIEP---EILASVLLPLQNPIVDIGTL 134 (268)
Q Consensus 94 ~~~--~~~d~vV~lqGD~Pli~~---~~Id~~i~~~~~~~~dv~tl 134 (268)
... .+..--||+=|..|..+| .+++.+-..+..-..++..+
T Consensus 147 ~~~~~~~~~~~VNiig~~~~~~~~~~gD~~eik~ll~~~Gl~~~~~ 192 (427)
T cd01971 147 VGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 5888877898126847767788776556999999999859857998
No 182
>PRK00811 spermidine synthase; Provisional
Probab=27.06 E-value=47 Score=14.35 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=50.3
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCEE
Q ss_conf 885000006722668999999967998699986833000100012222222222345652048999974223-3452100
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDS-DKKSQII 102 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~-~~~~d~v 102 (268)
|.++|.-=+|--.+.+ +-.+...+.+|..+-=|+++.+.|+++=.+.--..-+..+-+=.+.++.+-++. ...||+|
T Consensus 79 pk~VLIiGGGDGg~~r--E~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvI 156 (283)
T PRK00811 79 PKKVLIIGGGDGGTLR--EVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVI 156 (283)
T ss_pred CCEEEEECCCCHHHHH--HHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEE
T ss_conf 7748995687479999--98427885679999468999999999838863133029715998278999998452355489
Q ss_pred EECCCCCC------CCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 00152210------1000001223332101344321111112
Q gi|254780765|r 103 VNMQADIP------NIEPEILASVLLPLQNPIVDIGTLGTRI 138 (268)
Q Consensus 103 V~lqGD~P------li~~~~Id~~i~~~~~~~~dv~tl~~~~ 138 (268)
|. -...| |.+.+....+-..+.....-+....++.
T Consensus 157 I~-D~tDP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp~ 197 (283)
T PRK00811 157 IV-DSTDPVGPAEGLFTKEFYENCKRALKEGGIFVAQSESPF 197 (283)
T ss_pred EE-ECCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEECCCCHH
T ss_conf 98-089988644553459999999985399958999279832
No 183
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.44 E-value=49 Score=14.28 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCC-E-EEEECCCC--CHHHHCCCCCCCCCCCCCCCCCCCHHH--H-HHHHHHCCCCCCCEEEECCCC
Q ss_conf 668999999967998-6-99986833--000100012222222222345652048--9-999742233452100001522
Q gi|254780765|r 36 MILHTAIRARKANIG-R-VIVAVDDT--KINEIVLQAGFESVMTHTSHQSGSDRI--F-EALNIIDSDKKSQIIVNMQAD 108 (268)
Q Consensus 36 lI~~v~~~a~~s~~~-~-viVaTdd~--~I~~~~~~~g~~~i~t~~~~~~GTdRi--~-ea~~~l~~~~~~d~vV~lqGD 108 (268)
-++..++++....++ + +.|.|+.. ...+.|+++|+++..-.. ....+|- . +.++.+. ..+.|+|| |-|=
T Consensus 14 Nl~aii~a~~~~~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~--~~~~~r~~~d~~i~~~L~-~~~vDlIv-LAGy 89 (200)
T PRK05647 14 NLQAIIDACAAGQLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDH--KDFPSREAFDAALVEALD-AYEPDLVV-LAGF 89 (200)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECC--CCCCCHHHHHHHHHHHHH-HCCCCEEE-ECCH
T ss_conf 4999999987599994899999789753665999975997699677--667998999999999998-64999999-9881
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 10100000122333
Q gi|254780765|r 109 IPNIEPEILASVLL 122 (268)
Q Consensus 109 ~Pli~~~~Id~~i~ 122 (268)
+-.++++.+++.-.
T Consensus 90 Mril~~~~l~~~~~ 103 (200)
T PRK05647 90 MRILGPTFVSAYEG 103 (200)
T ss_pred HHHCCHHHHHHCCC
T ss_conf 33389899953779
No 184
>TIGR00615 recR recombination protein RecR; InterPro: IPR000093 The bacterial protein recR seems to play a role in a recombinational process of DNA repair . It may act with recF and recO. RecR is a protein of about 200 amino acid residues. This protein contains a putative C4-type zinc finger in the N-terminal section.; GO: 0006281 DNA repair, 0006310 DNA recombination.
Probab=26.09 E-value=44 Score=14.55 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=15.5
Q ss_pred HHHHHHCCCCCCCEEEECCCC-CCC--CCCCHHH--HHHH
Q ss_conf 999742233452100001522-101--0000012--2333
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQAD-IPN--IEPEILA--SVLL 122 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD-~Pl--i~~~~Id--~~i~ 122 (268)
.|++++.. +...|.| |+|= +|+ |.|++|+ .+.+
T Consensus 95 ~a~E~~~~-f~G~YhV-L~G~isPl~Gigp~~~~i~~L~~ 132 (205)
T TIGR00615 95 FALEKTKE-FRGRYHV-LGGLISPLDGIGPEDLKIAALLK 132 (205)
T ss_pred HHHHHHHH-HCCCEEE-ECCEECCCCCCCCCCCCHHHHHH
T ss_conf 99876542-1660143-15641764576832214688998
No 185
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=25.97 E-value=44 Score=14.57 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=5.9
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 21010000012233
Q gi|254780765|r 108 DIPNIEPEILASVL 121 (268)
Q Consensus 108 D~Pli~~~~Id~~i 121 (268)
...+.+|+......
T Consensus 100 ~~~i~sp~~~~~~l 113 (224)
T COG2003 100 GVVITSPEAVAEYL 113 (224)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 77548999999999
No 186
>PRK13113 consensus
Probab=25.40 E-value=51 Score=14.16 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCCC--CC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 06722668999999967998--6999868330001000122--22-2222223--4565204899997422334521000
Q gi|254780765|r 31 INGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVLQAG--FE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~~~g--~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
+..=|.|+...++|.+.+.+ +++ ++.+..++.. .. ++|+--+ +..|-+++...++.... |-++
T Consensus 58 ~ADGPvIq~A~~rAL~~G~~~~~~~------~~v~~~r~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~Gv----dGvI 127 (263)
T PRK13113 58 MADGPTIQLAGQRALEGGMTLDRTL------DMVRAFRKEDDTTPIVMMGYYNPIYSRGVDRFLAEAKEAGI----DGLI 127 (263)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC----CEEE
T ss_conf 7658999999999997798388999------99997512389988899831368988569999999877794----3697
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 0152210100000122333210134432111111220110
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD 143 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~ 143 (268)
. .|-|+ +.-..+...++..+.+...+++|.+.++.
T Consensus 128 i--pDLP~---eE~~~~~~~~~~~~l~~I~lvaPtt~~~R 162 (263)
T PRK13113 128 V--VDLPP---EEDSELCLPAQAAGLNFIRLATPTTDDRR 162 (263)
T ss_pred E--CCCCH---HHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 1--79997---88899999999779867999479999999
No 187
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=25.30 E-value=51 Score=14.15 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHHHCC
Q ss_conf 88768999999999997307
Q gi|254780765|r 232 AMSVDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 232 ~~~IDt~~Dl~~v~~il~~~ 251 (268)
.-.+||.-|++.|.+.|+.-
T Consensus 188 dGCinT~Vdve~v~e~l~~~ 207 (209)
T COG1852 188 DGCINTEVDVEEVLEVLKLG 207 (209)
T ss_pred CCCCCCEEEHHHHHHHHHCC
T ss_conf 88657176699999998602
No 188
>KOG1208 consensus
Probab=25.21 E-value=51 Score=14.14 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=13.3
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88500000672266899999996799869998683
Q gi|254780765|r 24 PKKILADINGLPMILHTAIRARKANIGRVIVAVDD 58 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd 58 (268)
+|++..-.|+-.=|..-.-+++...-..||++..|
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~ 68 (314)
T KOG1208 34 SGKVALVTGATSGIGFETARELALRGAHVVLACRN 68 (314)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 78779995898843799999999579989998477
No 189
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=25.04 E-value=33 Score=15.36 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHCCC--CCCCC
Q ss_conf 21000015221010000012233321013--44321
Q gi|254780765|r 99 SQIIVNMQADIPNIEPEILASVLLPLQNP--IVDIG 132 (268)
Q Consensus 99 ~d~vV~lqGD~Pli~~~~Id~~i~~~~~~--~~dv~ 132 (268)
.+-|..+||| |.+|+.++++++..-++ .+||+
T Consensus 73 ~~nv~fi~GD--ftdee~l~ki~~~~g~dekk~DVV 106 (192)
T TIGR00438 73 IENVDFIRGD--FTDEEVLNKILERVGDDEKKVDVV 106 (192)
T ss_pred CCCEEEEECC--CCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 4661475447--678789999998578987437789
No 190
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=24.76 E-value=52 Score=14.08 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=39.4
Q ss_pred EECCCC-------CHHHHCCCCCCCCCCCCCCCCCCC--HHH--HHHHHHHCCCCCCCEEEECCCCCCCC-CCCHHHHHH
Q ss_conf 986833-------000100012222222222345652--048--99997422334521000015221010-000012233
Q gi|254780765|r 54 VAVDDT-------KINEIVLQAGFESVMTHTSHQSGS--DRI--FEALNIIDSDKKSQIIVNMQADIPNI-EPEILASVL 121 (268)
Q Consensus 54 VaTdd~-------~I~~~~~~~g~~~i~t~~~~~~GT--dRi--~ea~~~l~~~~~~d~vV~lqGD~Pli-~~~~Id~~i 121 (268)
|+|+++ .+.++|...|+++.-.-.+..||+ +|. .+.+..+. ..|.+|.--=|---. +-.++..++
T Consensus 7 VST~~Q~~~~Q~~~l~~~~~~~g~~~~~i~~e~~SG~~~~Rp~l~~ll~~~r---~gD~lvV~~lDRL~R~~~~~l~~l~ 83 (146)
T cd03767 7 ASTDEQDATRAKESLEAFATERGFYIAGFYVENASGAKLDRPELFRLLDDAQ---SGDVLLVEQIDRLSRLPLDDWETLK 83 (146)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHCC---CCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 3687529999999999989877981679998603357446889999998286---9989999861535689899999999
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 32101344321111112
Q gi|254780765|r 122 LPLQNPIVDIGTLGTRI 138 (268)
Q Consensus 122 ~~~~~~~~dv~tl~~~~ 138 (268)
+.+.+....+..+-.|.
T Consensus 84 ~~l~~kGv~i~~ld~p~ 100 (146)
T cd03767 84 ASIAAKGLRVVSLDLPT 100 (146)
T ss_pred HHHHHCCCEEEECCCCC
T ss_conf 99997897899857876
No 191
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=24.76 E-value=52 Score=14.08 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCC--------CCHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHCCCCCCCE
Q ss_conf 0672266899999996799869998683--------300010001222222222234565204-8999974223345210
Q gi|254780765|r 31 INGLPMILHTAIRARKANIGRVIVAVDD--------TKINEIVLQAGFESVMTHTSHQSGSDR-IFEALNIIDSDKKSQI 101 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~~viVaTdd--------~~I~~~~~~~g~~~i~t~~~~~~GTdR-i~ea~~~l~~~~~~d~ 101 (268)
+.|.--+.+.-+.+...+..++.|+||. +++.+..+..|+++..-++--.+-+.. +.+++..+. ..++|.
T Consensus 11 ~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~-~~~~D~ 89 (377)
T COG1454 11 LFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAR-EFGPDT 89 (377)
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCE
T ss_conf 8657859999999984288715999798631106699999998744982899568899998889999999998-169998
Q ss_pred EEECCCCCCC
Q ss_conf 0001522101
Q gi|254780765|r 102 IVNMQADIPN 111 (268)
Q Consensus 102 vV~lqGD~Pl 111 (268)
||-|-|-+|+
T Consensus 90 iIalGGGS~~ 99 (377)
T COG1454 90 IIALGGGSVI 99 (377)
T ss_pred EEEECCCCHH
T ss_conf 9997793087
No 192
>KOG1198 consensus
Probab=24.64 E-value=52 Score=14.07 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=52.7
Q ss_pred CCCC-CCCEECCCCCCCHHH-HHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8889-885000006722668-99999996799869998683300010001222222222234565204899997422334
Q gi|254780765|r 20 SMRF-PKKILADINGLPMIL-HTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDK 97 (268)
Q Consensus 20 S~Rl-p~K~L~~i~gkplI~-~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~ 97 (268)
++++ +|+++.-++|-+-+. +.++-|+..++ ..++++++++=.+.++++|+..+. ++.. +-+.|..++.- ..
T Consensus 152 ~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vv---dy~~--~~~~e~~kk~~-~~ 224 (347)
T KOG1198 152 SKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVV---DYKD--ENVVELIKKYT-GK 224 (347)
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCCCC---CCCC--HHHHHHHHHHC-CC
T ss_conf 23568998699993874899999999987497-479998155416899972996512---4885--77999987622-78
Q ss_pred CCCEEEECCCCC
Q ss_conf 521000015221
Q gi|254780765|r 98 KSQIIVNMQADI 109 (268)
Q Consensus 98 ~~d~vV~lqGD~ 109 (268)
.+|+|+.-=|..
T Consensus 225 ~~DvVlD~vg~~ 236 (347)
T KOG1198 225 GVDVVLDCVGGS 236 (347)
T ss_pred CCEEEEECCCCC
T ss_conf 850999888897
No 193
>pfam04951 Peptidase_M55 D-aminopeptidase. Bacillus subtilis DppA is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a 'self-compartmentalising protease', a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organized in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterized by the SXDXEG key sequence. The only known substrates are D-ala-D-ala and D-ala-gly-gly.
Probab=24.31 E-value=53 Score=14.03 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=13.1
Q ss_pred HHHHHHHHHHCCCCEEEEECC
Q ss_conf 689999999679986999868
Q gi|254780765|r 37 ILHTAIRARKANIGRVIVAVD 57 (268)
Q Consensus 37 I~~v~~~a~~s~~~~viVaTd 57 (268)
+..+++-|...+.++|+|.-.
T Consensus 39 vnAaiega~~aGa~eVvV~Ds 59 (265)
T pfam04951 39 VNAAIEGAFAGGATEVVVNDS 59 (265)
T ss_pred HHHHHHHHHHCCCCEEEEECC
T ss_conf 999999998759958999706
No 194
>KOG1602 consensus
Probab=23.98 E-value=54 Score=13.99 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=38.4
Q ss_pred CHHHHCCCCCCCCC----CCCCCCCCCCHHHH-------HHHHHHC----CCCCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 00010001222222----22223456520489-------9997422----334521000015221010000012233321
Q gi|254780765|r 60 KINEIVLQAGFESV----MTHTSHQSGSDRIF-------EALNIID----SDKKSQIIVNMQADIPNIEPEILASVLLPL 124 (268)
Q Consensus 60 ~I~~~~~~~g~~~i----~t~~~~~~GTdRi~-------ea~~~l~----~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~ 124 (268)
+|.++|.++|+++| ++-.++.++-+-|- +-++.+. ....+.+=|.+-||--+++++....+-+..
T Consensus 71 ~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ie 150 (271)
T KOG1602 71 EILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIE 150 (271)
T ss_pred HHHHHHHHCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHH
T ss_conf 99999997197279989875664079889999999999999998888766676627079997663328999999999999
Q ss_pred ---CCCCCCCCCCCCCCCCHHH
Q ss_conf ---0134432111111220110
Q gi|254780765|r 125 ---QNPIVDIGTLGTRIHGSTD 143 (268)
Q Consensus 125 ---~~~~~dv~tl~~~~~~~~~ 143 (268)
+++..-....+.+-+..++
T Consensus 151 E~Tknn~~~~L~vcf~Ytsr~E 172 (271)
T KOG1602 151 EATKNNTRLILNVCFAYTSRDE 172 (271)
T ss_pred HHHHCCCCEEEEEEECCCCHHH
T ss_conf 9863378439999941476899
No 195
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=23.75 E-value=54 Score=13.96 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCCEECCCCCCCHHHHHHH-HHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 8850000067226689999-999679986999868330001000122222222223456520489999742233452100
Q gi|254780765|r 24 PKKILADINGLPMILHTAI-RARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQII 102 (268)
Q Consensus 24 p~K~L~~i~gkplI~~v~~-~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~v 102 (268)
||.-+.-.+|-.-+....- -|+..+...|++++.+++.. ++++.|+..+....++ .+.+.+..+-....+|+|
T Consensus 142 ~g~~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~-----d~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREE-----DFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHCCCCEEEECCCC-----CHHHHHHHHHCCCCCCEE
T ss_conf 9997999778546999999999984995899981757889-9987399889705642-----489999998379987889
Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 0015221010000012233321013
Q gi|254780765|r 103 VNMQADIPNIEPEILASVLLPLQNP 127 (268)
Q Consensus 103 V~lqGD~Pli~~~~Id~~i~~~~~~ 127 (268)
++. +..++..+.+..+...
T Consensus 216 ~D~------vG~~~~~~~l~~l~~~ 234 (326)
T COG0604 216 LDT------VGGDTFAASLAALAPG 234 (326)
T ss_pred EEC------CCHHHHHHHHHHHCCC
T ss_conf 979------8679999999974259
No 196
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.70 E-value=55 Score=13.96 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCC-CCCCC-CCCCCC-CCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 00672266899999996799869998683300010001-22222-222223-4565204899997422334521000015
Q gi|254780765|r 30 DINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQ-AGFES-VMTHTS-HQSGSDRIFEALNIIDSDKKSQIIVNMQ 106 (268)
Q Consensus 30 ~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~-~g~~~-i~t~~~-~~~GTdRi~ea~~~l~~~~~~d~vV~lq 106 (268)
+++.=|.|+...++|...+.+ -.++.+..++ .+... +||--+ +..|.++....++.... |=++.
T Consensus 44 PvADGpvIq~A~~~Al~~g~~-------~~~i~~~~r~~~~~pivlM~Y~N~~~~g~e~F~~~~~~~Gv----dGvIi-- 110 (247)
T PRK13125 44 PKYDGPVIRKAHREVSYWGLD-------YWSLLEEVRKKVGVPTYIMTYLEDYVGSLDDLLNTAKEVGA----RGVLF-- 110 (247)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-------HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC----CEEEE--
T ss_conf 766609999999999876998-------99999985056899889729889999769999999998599----75883--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 221010000012233321013443211111122011
Q gi|254780765|r 107 ADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST 142 (268)
Q Consensus 107 GD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~ 142 (268)
.|.|+--|+..+...+..++...+...+++|.+..+
T Consensus 111 pDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ 146 (247)
T PRK13125 111 PDLLIDFPDELEKYVELIRRYGLAPVFFTSPKFPDR 146 (247)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 388875467899999999976984699957998199
No 197
>PRK07757 acetyltransferase; Provisional
Probab=23.69 E-value=55 Score=13.96 Aligned_cols=13 Identities=38% Similarity=0.450 Sum_probs=4.8
Q ss_pred CCEEEEECCCCCH
Q ss_conf 9869998683300
Q gi|254780765|r 49 IGRVIVAVDDTKI 61 (268)
Q Consensus 49 ~~~viVaTdd~~I 61 (268)
+++-+|+..|.+|
T Consensus 40 i~~f~Vae~dg~I 52 (152)
T PRK07757 40 IRDFYVAEEDGEI 52 (152)
T ss_pred HCCEEEEEECCEE
T ss_conf 4749999999999
No 198
>PRK09982 universal stress protein UspD; Provisional
Probab=23.68 E-value=55 Score=13.95 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf 22668999999967--9986999868
Q gi|254780765|r 34 LPMILHTAIRARKA--NIGRVIVAVD 57 (268)
Q Consensus 34 kplI~~v~~~a~~s--~~~~viVaTd 57 (268)
..+|.+.+.-|+.. +++=|.|.++
T Consensus 17 ~~Li~KAv~lAk~~~AklSlIhvd~~ 42 (142)
T PRK09982 17 ALLVNKALELARHNDAHLTLIHIDDG 42 (142)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 99999999998760983999999088
No 199
>PTZ00256 glutathione peroxidase; Provisional
Probab=23.32 E-value=48 Score=14.28 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=5.0
Q ss_pred CHHHHHH-HHHHH
Q ss_conf 9999999-99997
Q gi|254780765|r 237 TTNDLEK-VRTLI 248 (268)
Q Consensus 237 t~~Dl~~-v~~il 248 (268)
.|++++. ++++|
T Consensus 169 ~P~~l~~~Ie~lL 181 (183)
T PTZ00256 169 KPNEMMQDIEKLL 181 (183)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999997
No 200
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin); InterPro: IPR014064 This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulphide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (IPR000106 from INTERPRO), as does a group of glutathione/glutaredoxin type arsenate reductases (IPR014062 from INTERPRO). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported..
Probab=22.94 E-value=36 Score=15.09 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=10.8
Q ss_pred CCCCEEEECCCCC----CCCCCC
Q ss_conf 4521000015221----010000
Q gi|254780765|r 97 KKSQIIVNMQADI----PNIEPE 115 (268)
Q Consensus 97 ~~~d~vV~lqGD~----Pli~~~ 115 (268)
.+.|+||-||||. |.+.|.
T Consensus 68 ~~adlVvTLCGdA~D~CP~~P~~ 90 (129)
T TIGR02691 68 NKADLVVTLCGDARDKCPALPPN 90 (129)
T ss_pred HCCCEEEECCCCCCCCCCCCCCC
T ss_conf 21787876235656688889844
No 201
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=22.64 E-value=57 Score=13.83 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=62.4
Q ss_pred CCEECCCCCCCHHHHH-HHHHHHCCCCEEEEECCCCCHHH-HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCE
Q ss_conf 8500000672266899-99999679986999868330001-000122222222223456520489999742233-45210
Q gi|254780765|r 25 KKILADINGLPMILHT-AIRARKANIGRVIVAVDDTKINE-IVLQAGFESVMTHTSHQSGSDRIFEALNIIDSD-KKSQI 101 (268)
Q Consensus 25 ~K~L~~i~gkplI~~v-~~~a~~s~~~~viVaTdd~~I~~-~~~~~g~~~i~t~~~~~~GTdRi~ea~~~l~~~-~~~d~ 101 (268)
|=.+.-=+|-+=|.-+ +.=||..+ -+|++.++|+|=.+ .|++.|+++.+-..+ +-+.|+++..... .-.|.
T Consensus 145 GEtvLiHGGaSGIGttAIqLAKA~G-a~V~~TaGS~eK~~~a~~~LGAd~aINY~e-----~DFve~~k~~t~g~kGvDV 218 (334)
T TIGR02824 145 GETVLIHGGASGIGTTAIQLAKAFG-ARVFTTAGSDEKCATACEALGADIAINYRE-----EDFVEVVKEETGGGKGVDV 218 (334)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEEEEECCC-----CCHHHHHHHHCCCCCCCCE
T ss_conf 9728997136736799999998569-759998289899999998609807860777-----3479999982689985317
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0001522101000001223332101
Q gi|254780765|r 102 IVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 102 vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
|+. .+..+++.+=++.+-.
T Consensus 219 ILD------~vGg~Yl~~N~~alA~ 237 (334)
T TIGR02824 219 ILD------IVGGSYLARNIKALAL 237 (334)
T ss_pred EEE------CCCHHHHHHHHHHHHC
T ss_conf 985------7766889989999840
No 202
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.50 E-value=58 Score=13.81 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6520489999742233452100001522101000001223332101344321111
Q gi|254780765|r 81 SGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLG 135 (268)
Q Consensus 81 ~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~ 135 (268)
.||+|+.|.+..+-.+. -|+++.+|.. ......+.++..+.+.+.|+...+
T Consensus 460 ~Gteri~eel~~~FP~~---~i~r~d~d~~-~~~~~~~~~~~~~~~~~~dIlvGT 510 (699)
T PRK05580 460 VGTERTEEELARLFPGA---RVLRIDRDTT-RRKGALEQLLEDFARGEADILVGT 510 (699)
T ss_pred HHHHHHHHHHHHHCCCC---CEEEECCCCC-CCCCCHHHHHHHHHCCCCCEEECC
T ss_conf 68599999999778999---8899847556-786316889999746898789777
No 203
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=22.13 E-value=59 Score=13.76 Aligned_cols=113 Identities=18% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHH
Q ss_conf 48999974223345210000152210100000122333210134432111111220110037544314651454442001
Q gi|254780765|r 85 RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFR 164 (268)
Q Consensus 85 Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~ 164 (268)
|.+.++..+.. .-+|+.++| -+.=|.=|++||++++.- .|=+|.+....+| .+.+-|
T Consensus 96 ~Tf~Tl~~v~~-~~PDvklCL-STNGL~LP~~vDrlvdlg----vdHVTiTiN~iDP------~vG~~I----------- 152 (461)
T TIGR01290 96 KTFQTLELVAR-EVPDVKLCL-STNGLALPEHVDRLVDLG----VDHVTITINAIDP------EVGEKI----------- 152 (461)
T ss_pred CCHHHHHHHHH-HCCCEEEEC-CCCCCCCHHHHHHHHHCC----CCCEEEEECCCCH------HHHCEE-----------
T ss_conf 00899999985-178214200-126563134652464238----8817988314063------551030-----------
Q ss_pred HHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCC---HHHCCHHHHHHHHCCC--EEEEEEECCCCCCCCCHH
Q ss_conf 11103577753111223520135520023333320799821---1120844798997896--266998458888768999
Q gi|254780765|r 165 ALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVL---EQRESLEQLRALEARM--RIDVKIVQSNAMSVDTTN 239 (268)
Q Consensus 165 alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~l---E~~E~lEqLR~leng~--~I~~~~~~~~~~~IDt~~ 239 (268)
|+|=..-=++|..-.-+.+ .+.++||.| +|-|+ ||.++.++ |||- +
T Consensus 153 ----------------------YpWv~y~G~RY~Gr~Aa~lL~erQl~G~~~L--~ergiL~KvNSvlIP----GiND-~ 203 (461)
T TIGR01290 153 ----------------------YPWVAYEGKRYTGREAAKLLIERQLEGLEKL--TERGILVKVNSVLIP----GIND-E 203 (461)
T ss_pred ----------------------CCCEEECCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCEEEECCEECC----CCCC-H
T ss_conf ----------------------6523326733354899999899999999999--738854888006438----9881-7
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999973
Q gi|254780765|r 240 DLEKVRTLIP 249 (268)
Q Consensus 240 Dl~~v~~il~ 249 (268)
.|-.|.+-.+
T Consensus 204 HL~eVsk~vk 213 (461)
T TIGR01290 204 HLVEVSKKVK 213 (461)
T ss_pred HHHHHHHHHH
T ss_conf 8999877751
No 204
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=22.04 E-value=59 Score=13.75 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCC
Q ss_conf 672266899999996799869998683300010001222
Q gi|254780765|r 32 NGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGF 70 (268)
Q Consensus 32 ~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~ 70 (268)
..-+|+..-+.+......++|+..++|.++.+.+++.|+
T Consensus 74 ~Dv~MV~aGI~~~~l~~~~~v~c~i~d~~~~e~a~~~g~ 112 (210)
T COG2082 74 VDVNMVAAGITRRRLPALNPVICYVDDPRVAELAKEEGI 112 (210)
T ss_pred ECCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHCC
T ss_conf 811899975561232236837999358136778876283
No 205
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=21.84 E-value=59 Score=13.73 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=40.0
Q ss_pred EEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 0135520023333320799821112084479899-7896266998458888768999999999997307245688776
Q gi|254780765|r 184 LGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYKKI 260 (268)
Q Consensus 184 vGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~~~~~~~~~ 260 (268)
+|+-.+--++|++ .+-.-|.-+. .|.-|+| ++|+++....+++ -++.|-..||+.+++++....++-.+.+|
T Consensus 214 LGVQSiyd~Vl~~-~~RGHtvedv---~~a~rLlKd~GfKv~~HiMpG-LPgs~~erDl~~f~~~f~~p~f~PDmlKI 286 (515)
T COG1243 214 LGVQSIYDDVLER-TKRGHTVEDV---VEATRLLKDAGFKVGYHIMPG-LPGSDFERDLESFREIFEDPRFRPDMLKI 286 (515)
T ss_pred EEEEEHHHHHHHH-HCCCCCHHHH---HHHHHHHHHCCCEEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8326579999998-3389619999---999999985183799996589-99988677899999997188889875788
No 206
>PRK13124 consensus
Probab=21.81 E-value=60 Score=13.72 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCCCCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 06722668999999967998--699986833000100012222-2222223--456520489999742233452100001
Q gi|254780765|r 31 INGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVLQAGFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIVNM 105 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~~~g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV~l 105 (268)
+..=|.|++...+|...+.+ +++ +.+.++-++.... ++|+.-+ +..|.||+.+.++....+ -++.
T Consensus 50 ~ADGpvIq~A~~~AL~~G~~~~~~~-----~~~~~~r~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv~----GvIi- 119 (257)
T PRK13124 50 LADGPVIQRASKRALNGGMNIVKAM-----ELVGKMRKKVTIPIVYFTYYNPVLQYGLEKFFALARENGID----GLLI- 119 (257)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCC----EEEC-
T ss_conf 7657999999999997699689999-----99998524478888997500789875799999999975998----4777-
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 52210100000122333210134432111111
Q gi|254780765|r 106 QADIPNIEPEILASVLLPLQNPIVDIGTLGTR 137 (268)
Q Consensus 106 qGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~ 137 (268)
.|-|+= .-..+.....+.+.+...+++|
T Consensus 120 -pDLP~e---E~~~~~~~~~~~gl~~I~lvaP 147 (257)
T PRK13124 120 -PDLPLE---ESGELQEICDKYGIYLIPLVAP 147 (257)
T ss_pred -CCCCHH---HHHHHHHHHHHCCCCEEEEECC
T ss_conf -899979---9999999998668735788479
No 207
>PRK07985 oxidoreductase; Provisional
Probab=21.70 E-value=60 Score=13.71 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=59.2
Q ss_pred CCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEC--CCC----CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7678889885000006722668999999967998699986--833----0001000122222222223456520489999
Q gi|254780765|r 17 RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV--DDT----KINEIVLQAGFESVMTHTSHQSGSDRIFEAL 90 (268)
Q Consensus 17 R~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaT--dd~----~I~~~~~~~g~~~i~t~~~~~~GTdRi~ea~ 90 (268)
-.+|-||.||.-.--+|-.-|.+.+-++....--+|+++- .++ +.++.+++.|.+++.-..|...- +-+...+
T Consensus 41 ~~~~GrL~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g~~~~~~~~Dvs~~-~~v~~lv 119 (294)
T PRK07985 41 YVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDE-KFARSLV 119 (294)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHH
T ss_conf 887777899979991726699999999999879999994299666789999999997299589997678999-9999999
Q ss_pred HHH-CCCCCCCEEEECCCCC---C-C--CCCCHHHHHHH
Q ss_conf 742-2334521000015221---0-1--00000122333
Q gi|254780765|r 91 NII-DSDKKSQIIVNMQADI---P-N--IEPEILASVLL 122 (268)
Q Consensus 91 ~~l-~~~~~~d~vV~lqGD~---P-l--i~~~~Id~~i~ 122 (268)
... +.....|++|+.-|-. | + ++++..+++++
T Consensus 120 ~~~~~~fG~iDiLVnnAG~~~~~~~~~~~s~e~~~~~~~ 158 (294)
T PRK07985 120 HEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFA 158 (294)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHCCHHHHHHHHH
T ss_conf 999998599888998066666888836589999999999
No 208
>PRK13137 consensus
Probab=21.28 E-value=61 Score=13.65 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCC-CCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 06722668999999967998--699986833000100012-222-2222223--45652048999974223345210000
Q gi|254780765|r 31 INGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVLQA-GFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 31 i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~~~-g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
++.=|.|+....+|.+.+.+ +++ ++.+.+++. ... ++|+.-+ +..|-+++.+.++....+ -++.
T Consensus 65 ~ADGPvIQ~A~~~AL~~G~~l~~~l------~~~~~~r~~~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvd----GlIi 134 (266)
T PRK13137 65 LGDGPTIQRASEQALAGGTSTRRTL------ELVRELRALTDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVD----GLIL 134 (266)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHCCCCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCC----EEEE
T ss_conf 6657999999999997798677899------99997555689878999345899875899999999976960----9994
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 152210100000122333210134432111111220110
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD 143 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~ 143 (268)
.|.|+- .-..+....++.+.+...+++|.+.++.
T Consensus 135 --pDLP~e---E~~~~~~~~~~~gi~~I~lvaPtT~~eR 168 (266)
T PRK13137 135 --PDLPPD---QDPEIADLAAEIGLAVTFLIAPTSTPER 168 (266)
T ss_pred --CCCCHH---HHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf --799978---8899999998759978999379999999
No 209
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.16 E-value=61 Score=13.64 Aligned_cols=38 Identities=5% Similarity=-0.076 Sum_probs=22.1
Q ss_pred CCCCCCCCCEECCCCCCCHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 678889885000006722668999999967-998699986
Q gi|254780765|r 18 LNSMRFPKKILADINGLPMILHTAIRARKA-NIGRVIVAV 56 (268)
Q Consensus 18 ~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s-~~~~viVaT 56 (268)
..||-|--+- .-++|..=+...++.+.+. +.+-|+|+|
T Consensus 51 ~~sT~l~E~~-~VfGG~~~L~~~I~~~~~~y~P~~I~V~t 89 (417)
T cd01966 51 LQTTAMDEVS-TILGGGENLEEALDTLAERAKPKVIGLLS 89 (417)
T ss_pred CCCCCCCCCC-EEECCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7767888786-56673899999999999852987799965
No 210
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.13 E-value=61 Score=13.64 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=34.7
Q ss_pred HHHHHHHHHHCCCCEEEEECC--C-------------CCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 689999999679986999868--3-------------300010001222222222234565204899
Q gi|254780765|r 37 ILHTAIRARKANIGRVIVAVD--D-------------TKINEIVLQAGFESVMTHTSHQSGSDRIFE 88 (268)
Q Consensus 37 I~~v~~~a~~s~~~~viVaTd--d-------------~~I~~~~~~~g~~~i~t~~~~~~GTdRi~e 88 (268)
+.|.++.++.-++|-|+||=| | +-+.+. .+.|+.+|+.+++|.|+ +|+..
T Consensus 28 L~~l~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~~fl~~l-~~~~~~vvvIaGNHDS~-~rL~~ 92 (402)
T PRK10966 28 LDWLLEQAQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNL-QQTGCQLVVLAGNHDSV-ATLNE 92 (402)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCCCH-HHHHC
T ss_conf 9999999998499999988755799999999999999999999-96699689994798987-77624
No 211
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.86 E-value=62 Score=13.60 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCC-CCCCC-CCCCCCC--CCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 006722668999999967998--6999868330001000-12222-2222223--4565204899997422334521000
Q gi|254780765|r 30 DINGLPMILHTAIRARKANIG--RVIVAVDDTKINEIVL-QAGFE-SVMTHTS--HQSGSDRIFEALNIIDSDKKSQIIV 103 (268)
Q Consensus 30 ~i~gkplI~~v~~~a~~s~~~--~viVaTdd~~I~~~~~-~~g~~-~i~t~~~--~~~GTdRi~ea~~~l~~~~~~d~vV 103 (268)
+++.=|.|+....+|++.+.+ +++ ++.+.++ +.... ++|+.-+ +..|.|++.+.++....+ -++
T Consensus 49 P~aDGpvIq~a~~~AL~~G~~~~~~f------~~~~~~r~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gvd----GvI 118 (256)
T PRK13111 49 PVADGPVIQRASLRALAAGVTLADVL------ELLREIRAKPTIPIVLMTYYNPIFQYGVEAFAADAAEAGVD----GLI 118 (256)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHH------HHHHHHHCCCCCCEEEEEECCHHHHHCHHHHHHHHHHCCCC----EEE
T ss_conf 76657999999999997799699999------99999860689988998503089870999999999975997----798
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
Q ss_conf 01522101000001223332101344321111112201100
Q gi|254780765|r 104 NMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDP 144 (268)
Q Consensus 104 ~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~ 144 (268)
. .|-|+ +.-+.+.+..++.+.+...+++|.+..+.+
T Consensus 119 i--pDLP~---eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri 154 (256)
T PRK13111 119 I--PDLPP---EEAEEFRAAAKKHGIDLIFLVAPTTTDERL 154 (256)
T ss_pred E--CCCCH---HHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 1--69997---888999999997598089996999988999
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=20.54 E-value=63 Score=13.56 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=11.5
Q ss_pred HHHHCCCCEEEEECCCCCHH--HHCCCCCCCCCC
Q ss_conf 99967998699986833000--100012222222
Q gi|254780765|r 43 RARKANIGRVIVAVDDTKIN--EIVLQAGFESVM 74 (268)
Q Consensus 43 ~a~~s~~~~viVaTdd~~I~--~~~~~~g~~~i~ 74 (268)
.|+..+++-+||=-..-.+. +-.+.||++||+
T Consensus 66 AA~~~Gi~a~IVMPE~aP~~Kv~AT~~yGAEViL 99 (381)
T TIGR01127 66 AAKVFGIKAKIVMPEYAPLSKVKATKSYGAEVIL 99 (381)
T ss_pred HHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9876187746878876735789997626961898
No 213
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.30 E-value=64 Score=13.53 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=53.5
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHH-HHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 56569998177678889885000006722668999-99996799869998683300010001222222222234565204
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTA-IRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDR 85 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~-~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdR 85 (268)
|+|| -+++|-+-|| +|+..-. +.|.+-+++--+-|++..+..+.....+.++++-.|.-.. +
T Consensus 1 MkKI-LLvCaaGMST-------------Smlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~LlgPQVr~---~ 63 (104)
T PRK09590 1 MAKA-LIICAAGMSS-------------SLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAFDLYLVSPQTKM---Y 63 (104)
T ss_pred CCEE-EEEECCCCCH-------------HHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEEEECHHHHH---H
T ss_conf 9559-9996899879-------------999999999999769836999848889887632268878998876887---8
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf 8999974223345210000152210100000122333210
Q gi|254780765|r 86 IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ 125 (268)
Q Consensus 86 i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~ 125 (268)
..+.-+..+....+--+|.-|+=.|+ |..+.++.+...
T Consensus 64 ~~~~k~~a~~~giPv~vI~~~~Y~Pl--p~g~~k~~~~i~ 101 (104)
T PRK09590 64 FKQFEEAGSKAGKPVVQIPPQAYIPI--PMGIEKMANLIL 101 (104)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCC--CCCHHHHHHHHH
T ss_conf 99999999872997788787464577--778899999987
Done!