HHsearch results for GI: 254780765 and protein with PDBid: 1vgw_A
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.92 E-value=2.2e-24 Score=171.13 Aligned_cols=218 Identities=15% Similarity=0.125 Sum_probs=136.5
Q ss_pred CCCCCCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCC-CHHHHCCCCCCCCCCCCCC
Q ss_conf 7555656999817767888988---50000067226689999999679-98699986833-0001000122222222223
Q gi|254780765|r 4 QHIKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDT-KINEIVLQAGFESVMTHTS 78 (268)
Q Consensus 4 ~~~~~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~-~I~~~~~~~g~~~i~t~~~ 78 (268)
+.|++|++|||||+++|+||+. |+|++|+|+|||+|+++++++++ ++.++|+|+++ ++.+........+.....
T Consensus 1 ~~~k~k~iAIIlAaG~gtRm~s~~pK~l~~i~gkpli~~~i~~~~~~~~i~~iiVv~~~~~~~~~~~~~~~~~~~~~~~- 79 (231)
T 1vgw_A 1 MSLKRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKN- 79 (231)
T ss_dssp ---CCCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECC-
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCCCEEEECC-
T ss_conf 9877753999988977602897998306379988899999999975787552278605156556654102341267405-
Q ss_pred CCCCCHH---HHHHHHHH---CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf 4565204---89999742---23345210000152210100000122333210134432111111220110037544314
Q gi|254780765|r 79 HQSGSDR---IFEALNII---DSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI 152 (268)
Q Consensus 79 ~~~GTdR---i~ea~~~l---~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv 152 (268)
.|.+| +..++..+ ....++|+|+..+||.||+++++++.++..+.+....... ..+..+.....+...+..
T Consensus 80 --~~~~~~~~~~~~l~~~~~~~~~~~~d~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 156 (231)
T 1vgw_A 80 --GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPVADTLKRAESGQISA 156 (231)
T ss_dssp --CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECCSCEEEESSSBEEE
T ss_pred --CCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCEEEECCCCEEE
T ss_conf --87500177888999999740156776589940443469999999999997511990997-347666058852892675
Q ss_pred EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 65145444200111103577753111223520135520023333320799821112084479899789626699845888
Q gi|254780765|r 153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~ 232 (268)
.. .|+. .+..-.-.+|....|.+-.... ...+. .+.-+| ++++|+++.++..+...
T Consensus 157 ~~--------------~r~~-------~~~~~~p~~f~~~~l~~~~~~~-~~~~~-tD~~~l-~~~~g~~v~~v~g~~~n 212 (231)
T 1vgw_A 157 TV--------------DRSG-------LWQAQTPQLFQAGLLHRALAAE-NLGGI-TDEASA-VEKLGVRPLLIQGDARN 212 (231)
T ss_dssp EE--------------CCTT-------EEEEEEEEEEEHHHHHHHHHC-----CC-CSHHHH-HHTTTCCCEEEECCTTC
T ss_pred EC--------------CHHH-------HHHHHCCCCCCHHHHHHHHHHC-CCCCC-CCHHHH-HHHCCCCEEEEECCCCC
T ss_conf 05--------------7777-------4677575422389999999851-65799-839999-99879965999768000
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 87689999999999973
Q gi|254780765|r 233 MSVDTTNDLEKVRTLIP 249 (268)
Q Consensus 233 ~~IDt~~Dl~~v~~il~ 249 (268)
+.||||+||+.||.+|+
T Consensus 213 ~kI~t~eDl~~ae~ll~ 229 (231)
T 1vgw_A 213 LKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp CCCCSHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 58699999999999985