HHsearch results for GI: 254780765 and protein with PDBid: 1vgw_A

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.92  E-value=2.2e-24  Score=171.13  Aligned_cols=218  Identities=15%  Similarity=0.125  Sum_probs=136.5

Q ss_pred             CCCCCCEEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCC-CHHHHCCCCCCCCCCCCCC
Q ss_conf             7555656999817767888988---50000067226689999999679-98699986833-0001000122222222223
Q gi|254780765|r    4 QHIKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDT-KINEIVLQAGFESVMTHTS   78 (268)
Q Consensus         4 ~~~~~ki~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~-~I~~~~~~~g~~~i~t~~~   78 (268)
                      +.|++|++|||||+++|+||+.   |+|++|+|+|||+|+++++++++ ++.++|+|+++ ++.+........+..... 
T Consensus         1 ~~~k~k~iAIIlAaG~gtRm~s~~pK~l~~i~gkpli~~~i~~~~~~~~i~~iiVv~~~~~~~~~~~~~~~~~~~~~~~-   79 (231)
T 1vgw_A            1 MSLKRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKN-   79 (231)
T ss_dssp             ---CCCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECC-
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCCCEEEECC-
T ss_conf             9877753999988977602897998306379988899999999975787552278605156556654102341267405-


Q ss_pred             CCCCCHH---HHHHHHHH---CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf             4565204---89999742---23345210000152210100000122333210134432111111220110037544314
Q gi|254780765|r   79 HQSGSDR---IFEALNII---DSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI  152 (268)
Q Consensus        79 ~~~GTdR---i~ea~~~l---~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv  152 (268)
                        .|.+|   +..++..+   ....++|+|+..+||.||+++++++.++..+.+....... ..+..+.....+...+..
T Consensus        80 --~~~~~~~~~~~~l~~~~~~~~~~~~d~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~  156 (231)
T 1vgw_A           80 --GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPVADTLKRAESGQISA  156 (231)
T ss_dssp             --CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECCSCEEEESSSBEEE
T ss_pred             --CCCEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEE-CCCCCCCEEEECCCCEEE
T ss_conf             --87500177888999999740156776589940443469999999999997511990997-347666058852892675


Q ss_pred             EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             65145444200111103577753111223520135520023333320799821112084479899789626699845888
Q gi|254780765|r  153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA  232 (268)
Q Consensus       153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~  232 (268)
                      ..              .|+.       .+..-.-.+|....|.+-.... ...+. .+.-+| ++++|+++.++..+...
T Consensus       157 ~~--------------~r~~-------~~~~~~p~~f~~~~l~~~~~~~-~~~~~-tD~~~l-~~~~g~~v~~v~g~~~n  212 (231)
T 1vgw_A          157 TV--------------DRSG-------LWQAQTPQLFQAGLLHRALAAE-NLGGI-TDEASA-VEKLGVRPLLIQGDARN  212 (231)
T ss_dssp             EE--------------CCTT-------EEEEEEEEEEEHHHHHHHHHC-----CC-CSHHHH-HHTTTCCCEEEECCTTC
T ss_pred             EC--------------CHHH-------HHHHHCCCCCCHHHHHHHHHHC-CCCCC-CCHHHH-HHHCCCCEEEEECCCCC
T ss_conf             05--------------7777-------4677575422389999999851-65799-839999-99879965999768000


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             87689999999999973
Q gi|254780765|r  233 MSVDTTNDLEKVRTLIP  249 (268)
Q Consensus       233 ~~IDt~~Dl~~v~~il~  249 (268)
                      +.||||+||+.||.+|+
T Consensus       213 ~kI~t~eDl~~ae~ll~  229 (231)
T 1vgw_A          213 LKLTQPQDAYIVRLLLD  229 (231)
T ss_dssp             CCCCSHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             58699999999999985