HHsearch results for GI: 254780765 and protein with PDBid: 1vic_A
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=100.00 E-value=0 Score=333.67 Aligned_cols=241 Identities=38% Similarity=0.598 Sum_probs=212.8
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 65699981776788898850000067226689999999679986999868330001000122222222223456520489
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIF 87 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~ 87 (268)
|+++|+|||||||+|||||+|++|+|+|||+|++++|+++++++|||+||++++.+.+.++|++++.+.+.+.+|+.+..
T Consensus 1 M~~~~iIpAR~gSkRlp~KnL~~i~GkpLI~~~i~~~~~~~i~~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 1vic_A 1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLA 80 (262)
T ss_dssp -CCEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 97599984387788899830145299089999999999769880999818832022554058611122023689833778
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 99974223345210000152210100000122333210134432111111220110037544314651454442001111
Q gi|254780765|r 88 EALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALY 167 (268)
Q Consensus 88 ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~aly 167 (268)
.+...... .+.++++++|||+||+++.+++.+++.+.....+....++......+..|.+.+..+.+.+. ++.+
T Consensus 81 ~~~~~~~~-~~~~~~~~l~~d~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 154 (262)
T 1vic_A 81 EVVEKLAI-PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDG-----YVLY 154 (262)
T ss_dssp HHHHHTTC-CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTS-----BEEE
T ss_pred HHHHHHCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCCCEEEECCCC-----CEEE
T ss_conf 99998425-67778999468766565002223454403456535889874078889349974336455888-----5522
Q ss_pred CCCCCCCCC---------------CCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-C
Q ss_conf 035777531---------------112235201355200233333207998211120844798997896266998458-8
Q gi|254780765|r 168 FTRTKTPHG---------------TGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-N 231 (268)
Q Consensus 168 fsR~~ip~~---------------~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~ 231 (268)
|+|.+.++. ...++++.|+|+|++++|.+|..+++++||..|+|||+|+|+||.+|+++.++. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~le~~e~le~~r~l~ng~~I~~~~~~~~~ 234 (262)
T 1vic_A 155 FSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVP 234 (262)
T ss_dssp EESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCC
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 10257741001232210133302465410452033032787655403799814667659999999879936799917999
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHH
Q ss_conf 88768999999999997307245
Q gi|254780765|r 232 AMSVDTTNDLEKVRTLIPHDHHK 254 (268)
Q Consensus 232 ~~~IDt~~Dl~~v~~il~~~~~~ 254 (268)
+++||||+||+.||++|++++--
T Consensus 235 ~~dIDt~~Dl~~ae~il~kn~~~ 257 (262)
T 1vic_A 235 AVGVDTAEDLEKVRAILAANGSH 257 (262)
T ss_dssp CCCCCSHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 85987999999999999878997