HHsearch results for GI: 254780765 and protein with PDBid: 1vpa_A
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.87 E-value=1.6e-21 Score=153.28 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=130.1
Q ss_pred EEEEECCCCCCCCC---CCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHH-
Q ss_conf 99981776788898---850000067226689999999679-9869998683300010001222222222234565204-
Q gi|254780765|r 11 LVIIPARLNSMRFP---KKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDR- 85 (268)
Q Consensus 11 ~~iIpAR~~S~Rlp---~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdR- 85 (268)
+|||||++.|+||. -|+|++++|+|||+|++++++.++ ++.|+|+|+++......+......... -...|.+|
T Consensus 15 iAVILAaG~GtRmg~~~pK~l~~i~GkPlI~~~i~~l~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (234)
T 1vpa_A 15 VAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLG--IVEGGDTRS 92 (234)
T ss_dssp EEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEE--EEECCSSHH
T ss_pred EEEECCCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCE--EECCCCCCC
T ss_conf 899946766623986997127589998999999999972887562023025023221111023565422--533887631
Q ss_pred --HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCH
Q ss_conf --899997422334521000015221010000012233321013443211111122011003754431465145444200
Q gi|254780765|r 86 --IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCF 163 (268)
Q Consensus 86 --i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~ 163 (268)
+..++..+.. .+.++++.++||.||++++++++++..+........ +.+.... +....+..
T Consensus 93 ~~~~~~~~~~~~-~~~d~~~~~~~d~P~i~~~~i~~li~~~~~~~~~~~--~~~~~d~--------~~~~~~~~------ 155 (234)
T 1vpa_A 93 QSVRSALEFLEK-FSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATL--ALKNSDA--------LVRVENDR------ 155 (234)
T ss_dssp HHHHHHHHHHGG-GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEE--EEECCSE--------EEEEETTE------
T ss_pred CHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEE--EECCCCE--------EEEECCCE------
T ss_conf 008899998874-499879995178887899999999999975793899--9756565--------99972985------
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 11110357775311122352013552002333332079982111208447989978962669984588887689999999
Q gi|254780765|r 164 RALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEK 243 (268)
Q Consensus 164 ~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~~Dl~~ 243 (268)
..+..| ...+...+-..|+.+.|.+... ...+..... ++ +.+.|+++..+..+...+.||||+||+.
T Consensus 156 -~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~---~~~~~tD~~-~~-~~~~g~~v~~v~g~~~n~kI~t~eDl~~ 222 (234)
T 1vpa_A 156 -IEYIPR-------KGVYRILTPQAFSYEILKKAHE---NGGEWADDT-EP-VQKLGVKIALVEGDPLCFKVTFKEDLEL 222 (234)
T ss_dssp -EEEECC-------TTEEEEEEEEEEEHHHHHHHHT---TCCCCSSSH-HH-HHTTTCCCEEEECCGGGCCCCSTTHHHH
T ss_pred -EECCCH-------HHHHHHHCCCEECHHHHHHHHH---HCCCCCCHH-HH-HHHCCCCEEEEECCHHHCCCCCHHHHHH
T ss_conf -001344-------6765552651010999999998---189776389-99-9986996599966866448999999999
Q ss_pred HHHHHHCC
Q ss_conf 99997307
Q gi|254780765|r 244 VRTLIPHD 251 (268)
Q Consensus 244 v~~il~~~ 251 (268)
|+.++++.
T Consensus 223 Ae~ilk~~ 230 (234)
T 1vpa_A 223 ARIIAREW 230 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999751