HHsearch results for GI: 254780765 and protein with PDBid: 3f1c_A
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str}
Probab=99.93 E-value=3.9e-25 Score=175.82 Aligned_cols=220 Identities=15% Similarity=0.168 Sum_probs=133.5
Q ss_pred CCCEEEEEEC-----CCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5656999817-----76788898850000067226689999999679-98699986833000100012222222222345
Q gi|254780765|r 7 KEKVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQ 80 (268)
Q Consensus 7 ~~ki~~iIpA-----R~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~ 80 (268)
|..++|||+| ||||++.| |+|++|+|+|||+|+++++++++ +++|+|+|+++.+.......+-.+........
T Consensus 1 m~~i~aiIlAaG~gtR~~s~~~P-K~l~~i~gkplI~~~i~~~~~s~~~~~IiVv~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGNVSMP-KQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVI 79 (246)
T ss_dssp -CCEEEEEECC-----C-CSSCC-GGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEE
T ss_pred CCEEEEEEECCCCCCCCCCCCCC-HHEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98079999658654149996968-03047889449999999997189867563024277898887655430356523541
Q ss_pred C-CCHH---HHHHHHHH---CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 6-5204---89999742---233452100001522101000001223332101344321111112201100375443146
Q gi|254780765|r 81 S-GSDR---IFEALNII---DSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIV 153 (268)
Q Consensus 81 ~-GTdR---i~ea~~~l---~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi 153 (268)
. |++| +..++..+ ....+.++|+.++||.||+++++|+++++.+.....+.+........ ......+.++..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~P~i~~~~I~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 158 (246)
T 3f1c_A 80 EGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTI-VESSNHEVITDI 158 (246)
T ss_dssp ECCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSSCE-EECSSSSBCCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCE-ECCCCCEEEEEE
T ss_conf 2554201008779999987532688864899845666788899999999999679769999555631-313222045543
Q ss_pred EECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHH-HHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 5145444200111103577753111223520135520023333-320799821112084479899789626699845888
Q gi|254780765|r 154 VASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR-FTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 154 ~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~-~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~ 232 (268)
.+. ..+++... --+|+.+.|.. +.+..+...+...+ +...++++|++|+++..+...
T Consensus 159 ~~~-------~~~~~~~t--------------P~~f~~~~l~~~~~~~~~~~~~~~tD-~~~~~~~~~~~i~~i~~~~~n 216 (246)
T 3f1c_A 159 PVR-------DHMYQGQT--------------PQSFNMKKVFNHYQNLTPEKKQILTD-ACKICLLAGDDVKLVKGEIFN 216 (246)
T ss_dssp CCG-------GGEEEEEE--------------EEEEEHHHHHHHHHTSCHHHHHHCCC-HHHHHHHTTCCCEEEECCTTC
T ss_pred ECC-------HHHHHHCC--------------CHHCCHHHHHHHHHHHHHHCCCCCCH-HHHHHHHCCCCEEEEECCHHH
T ss_conf 131-------14554407--------------31116999999999988708977428-999999879976999778776
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 876899999999999730
Q gi|254780765|r 233 MSVDTTNDLEKVRTLIPH 250 (268)
Q Consensus 233 ~~IDt~~Dl~~v~~il~~ 250 (268)
+.||||+||+.|+.+|++
T Consensus 217 ~kItt~eDl~~Ae~ll~~ 234 (246)
T 3f1c_A 217 IKITTPYDLKVANAIIQE 234 (246)
T ss_dssp CCCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 489999999999999998