HHsearch results for GI: 254780765 and protein with PDBid: 3k8d_A
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=100.00 E-value=0 Score=381.89 Aligned_cols=235 Identities=41% Similarity=0.604 Sum_probs=217.4
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 56999817767888988500000672266899999996799869998683300010001222222222234565204899
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFE 88 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~e 88 (268)
|++|+|||||||+|||||+|++|+|+|||+||+++|+++++++|+|+|||++|.+.++++|.++.++++++.+|++|+.+
T Consensus 18 k~i~IIpAR~gSkRlp~KnL~~i~GkPLI~~~i~~ak~s~~~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~ 97 (264)
T 3k8d_A 18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAE 97 (264)
T ss_dssp CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHH
T ss_pred CEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 57999836877987999601440995599999999997699809999676034365420461688742777887379999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC
Q ss_conf 99742233452100001522101000001223332101344321111112201100375443146514544420011110
Q gi|254780765|r 89 ALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF 168 (268)
Q Consensus 89 a~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf 168 (268)
+++.+.. .+++.|+++|||+||++|++++.+++.+...+.+.++.+++......+.|+|.||++.+.++ ++++|
T Consensus 98 ~~~~~~~-~~~~~ii~l~~d~Pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~vk~~~~~~~-----~~~~~ 171 (264)
T 3k8d_A 98 VVEKCAF-SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEG-----YALYF 171 (264)
T ss_dssp HHHHHTC-CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTS-----BEEEE
T ss_pred HHHHHCC-CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCCCCCEEEECCCC-----CCCCC
T ss_conf 9876125-76748999678533466303455555303566651344201036776248985189886888-----67235
Q ss_pred CCCCCCCCC-----------CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 357775311-----------12235201355200233333207998211120844798997896266998458-888768
Q gi|254780765|r 169 TRTKTPHGT-----------GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 169 sR~~ip~~~-----------~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID 236 (268)
+|+..|... ..+|+|+|+|+|++++|.++..+++|++|+.|+|||||+||||++|+++.++. .+++||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~G~~i~~~~~~~~~~~~ID 251 (264)
T 3k8d_A 172 SRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVD 251 (264)
T ss_dssp ESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHEECCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 43457212233244442044244143225887679988753179985777761899999987993689993799998998
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 9999999999973
Q gi|254780765|r 237 TTNDLEKVRTLIP 249 (268)
Q Consensus 237 t~~Dl~~v~~il~ 249 (268)
||+||+.||++|+
T Consensus 252 t~~Dl~~ae~~lK 264 (264)
T 3k8d_A 252 TPEDLERVRAEMR 264 (264)
T ss_dssp SHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHC
T ss_conf 9999999999609