HHsearch results for GI: 254780765 and protein with PDBid: 3k8d_A

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=100.00  E-value=0  Score=381.89  Aligned_cols=235  Identities=41%  Similarity=0.604  Sum_probs=217.4

Q ss_pred             CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             56999817767888988500000672266899999996799869998683300010001222222222234565204899
Q gi|254780765|r    9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFE   88 (268)
Q Consensus         9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~e   88 (268)
                      |++|+|||||||+|||||+|++|+|+|||+||+++|+++++++|+|+|||++|.+.++++|.++.++++++.+|++|+.+
T Consensus        18 k~i~IIpAR~gSkRlp~KnL~~i~GkPLI~~~i~~ak~s~~~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~   97 (264)
T 3k8d_A           18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAE   97 (264)
T ss_dssp             CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf             57999836877987999601440995599999999997699809999676034365420461688742777887379999


Q ss_pred             HHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC
Q ss_conf             99742233452100001522101000001223332101344321111112201100375443146514544420011110
Q gi|254780765|r   89 ALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF  168 (268)
Q Consensus        89 a~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf  168 (268)
                      +++.+.. .+++.|+++|||+||++|++++.+++.+...+.+.++.+++......+.|+|.||++.+.++     ++++|
T Consensus        98 ~~~~~~~-~~~~~ii~l~~d~Pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~vk~~~~~~~-----~~~~~  171 (264)
T 3k8d_A           98 VVEKCAF-SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEG-----YALYF  171 (264)
T ss_dssp             HHHHHTC-CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTS-----BEEEE
T ss_pred             HHHHHCC-CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCCCCCEEEECCCC-----CCCCC
T ss_conf             9876125-76748999678533466303455555303566651344201036776248985189886888-----67235


Q ss_pred             CCCCCCCCC-----------CCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf             357775311-----------12235201355200233333207998211120844798997896266998458-888768
Q gi|254780765|r  169 TRTKTPHGT-----------GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD  236 (268)
Q Consensus       169 sR~~ip~~~-----------~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID  236 (268)
                      +|+..|...           ..+|+|+|+|+|++++|.++..+++|++|+.|+|||||+||||++|+++.++. .+++||
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~G~~i~~~~~~~~~~~~ID  251 (264)
T 3k8d_A          172 SRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVD  251 (264)
T ss_dssp             ESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCHHHHEECCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             43457212233244442044244143225887679988753179985777761899999987993689993799998998


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9999999999973
Q gi|254780765|r  237 TTNDLEKVRTLIP  249 (268)
Q Consensus       237 t~~Dl~~v~~il~  249 (268)
                      ||+||+.||++|+
T Consensus       252 t~~Dl~~ae~~lK  264 (264)
T 3k8d_A          252 TPEDLERVRAEMR  264 (264)
T ss_dssp             SHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHC
T ss_conf             9999999999609