PSIBLAST alignment of GI: 254780765 and protein with PDB id: 1vh1

>gi|40889890|pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 256
>gi|40889891|pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase Length = 256
>gi|40889892|pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase Length = 256
>gi|40889893|pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase Length = 256

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 88/244 (36%), Positives = 116/244 (47%), Gaps = 8/244 (3%)

Query: 10  VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAG 69
            +VIIPAR  S R P K L DING P I+H   RAR++   R+IVA D   +   V  AG
Sbjct: 3   FVVIIPARYASTRLPGKPLVDINGKPXIVHVLERARESGAERIIVATDHEDVARAVEAAG 62

Query: 70  FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIV 129
            E   T   HQSG++R+ E +    +     +IVN+Q D P I   I+  V   L    V
Sbjct: 63  GEVCXTRADHQSGTERLAEVVEK-CAFSDDTVIVNVQGDEPXIPATIIRQVADNLAQRQV 121

Query: 130 DIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCF------RALYFTRTKTPHGTGPFYQH 183
              TL   IH + +  +PN VK+V+ +      F                      F +H
Sbjct: 122 GXATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRH 181

Query: 184 LGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIV-QSNAMSVDTTNDLE 242
           LGIY YR   ++R+    PS LE  E LEQLR L    +I V +  +     VDT  DLE
Sbjct: 182 LGIYGYRAGFIRRYVNWQPSPLEHIEXLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLE 241

Query: 243 KVRT 246
           +VR 
Sbjct: 242 RVRA 245