PSIBLAST alignment of GI: 254780765 and protein with PDB id: 1vh3

>gi|40889895|pdb|1VH3|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40889896|pdb|1VH3|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40889897|pdb|1VH3|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
 Score =  168 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 126/253 (49%), Gaps = 12/253 (4%)

Query: 10  VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAG 69
             VIIPAR  S R P K LADI G P I H   +A ++   RVI+A D+  + ++    G
Sbjct: 3   FTVIIPARFASSRLPGKPLADIKGKPXIQHVFEKALQSGASRVIIATDNENVADVAKSFG 62

Query: 70  FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIV 129
            E   T  +H SG++R+ E +    +   ++IIVN+Q D P I P I+  V   L    V
Sbjct: 63  AEVCXTSVNHNSGTERLAEVVEK-LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 121

Query: 130 DIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGP---------- 179
           +  +L  +IH + +  +PN VK++         F        +                 
Sbjct: 122 NXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFXNLQDVQKVQLSDA 181

Query: 180 FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA-MSVDTT 238
           + +H+GIYAYR   +K++ Q +P+ LE  E LEQLR L    RI V++ +    + VDT 
Sbjct: 182 YLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA 241

Query: 239 NDLEKVRTLIPHD 251
            DLEKVR ++  +
Sbjct: 242 EDLEKVRAILAAN 254