RPSBLAST alignment of GI: 254780765 and protein with PDBid: 3k8d
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264
Score = 141 bits (355), Expect = 2e-34
Identities = 91/247 (36%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
+VIIPAR S R P K L DING PMI+H RAR++ R+IVA D + V A
Sbjct: 18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAA 77
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G E MT HQSG++R+ E + +IVN+Q D P I I+ V L
Sbjct: 78 GGEVCMTRADHQSGTERLAEV-VEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ 136
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVAS------PSENGCFRALYFTRTKTPHGTGPFYQ 182
V + TL IH + + +PN VK+V+ + S F +
Sbjct: 137 VGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLR 196
Query: 183 HLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDTTNDL 241
HLGIY YR ++R+ PS LE E LEQLR L +I V + Q VDT DL
Sbjct: 197 HLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL 256
Query: 242 EKVRTLI 248
E+VR +
Sbjct: 257 ERVRAEM 263