RPSBLAST alignment of GI: 254780765 and protein with PDBid: 3oam

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252

 Score =  166 bits (421), Expect = 4e-42
 Identities = 88/252 (34%), Positives = 123/252 (48%), Gaps = 18/252 (7%)

Query: 9   KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
              V+IPAR  S R P K LADI G PMI     +A +A   RVI+A DD ++ + V   
Sbjct: 2   SFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDERVEQAVQAF 61

Query: 69  GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
           G    MT  +HQSG++R+ E +  +       I+VN+Q D P I P I+  V   L    
Sbjct: 62  GGVVCMTSPNHQSGTERLAEVVAKMAIPAD-HIVVNVQGDEPLIPPAIIRQVADNLAACS 120

Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHG-----------T 177
             + TL   I    +  +PN VK++      +    ALYF+R   P              
Sbjct: 121 APMATLAVEIEDEAEVFNPNAVKVIT-----DKSGYALYFSRATIPWDRDNFAKADKAIV 175

Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKI-VQSNAMSVD 236
            P  +H+GIYAYR   +  +    PS LE+ E LEQLR L    +I V + +++    VD
Sbjct: 176 QPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVD 235

Query: 237 TTNDLEKVRTLI 248
           T  DLE VR ++
Sbjct: 236 TPEDLEVVRRIV 247