BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (268 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 548 bits (1413), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/268 (100%), Positives = 268/268 (100%) Query: 1 MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK 60 MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK Sbjct: 1 MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK 60 Query: 61 INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV 120 INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV Sbjct: 61 INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV 120 Query: 121 LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF 180 LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF Sbjct: 121 LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF 180 Query: 181 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND 240 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND Sbjct: 181 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND 240 Query: 241 LEKVRTLIPHDHHKGLYKKIFNDKILKS 268 LEKVRTLIPHDHHKGLYKKIFNDKILKS Sbjct: 241 LEKVRTLIPHDHHKGLYKKIFNDKILKS 268 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 49 IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN-MQA 107 G IV D K+N L GF + + + + NII S+IIVN + Sbjct: 89 FGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANII---ANSKIIVNEKEI 145 Query: 108 DIPNIEPEIL 117 D+ I P++L Sbjct: 146 DLSIISPDLL 155 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 108 DIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVK 151 D+P + E+L V+ L NPI G + T+ D P I++ Sbjct: 96 DVP-VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQ 138 >gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 207 QRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYK 258 Q E L+++R L + V+ + V N+++ +R+ +P+D +YK Sbjct: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305 >gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 23.1 bits (48), Expect = 4.7, Method: Compositional matrix adjust. Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 76 HTSHQSGSDRIFEALN 91 H QSGSDRI +++N Sbjct: 292 HLPVQSGSDRILKSMN 307 >gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 22.7 bits (47), Expect = 7.4, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 85 RIFEALNIIDSDKKSQIIVNMQA--DIPNIEPEILASVLLPLQNPIVDIGTLG 135 R+ A I ++D+K II+NM+ + NI I L L N ++ I T+ Sbjct: 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 >gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 220 RMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYKKI 260 R + + I+Q N + + +RT + H H KG+Y + Sbjct: 3 RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWL 43 >gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 301 Score = 22.7 bits (47), Expect = 7.8, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%) Query: 121 LLPLQNPIVDIGTLGTRIHGSTDPDD-----PNIVKI 152 ++PL V IG G + DPD+ PN++ I Sbjct: 245 IVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINI 281 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.383 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,885 Number of Sequences: 1233 Number of extensions: 6575 Number of successful extensions: 23 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 11 length of query: 268 length of database: 328,796 effective HSP length: 72 effective length of query: 196 effective length of database: 240,020 effective search space: 47043920 effective search space used: 47043920 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)