BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate
cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(268 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 268
Score = 548 bits (1413), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK 60
MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK
Sbjct: 1 MKDQHIKEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTK 60
Query: 61 INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV 120
INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV
Sbjct: 61 INEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASV 120
Query: 121 LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF 180
LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF
Sbjct: 121 LLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPF 180
Query: 181 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND 240
YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND
Sbjct: 181 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTND 240
Query: 241 LEKVRTLIPHDHHKGLYKKIFNDKILKS 268
LEKVRTLIPHDHHKGLYKKIFNDKILKS
Sbjct: 241 LEKVRTLIPHDHHKGLYKKIFNDKILKS 268
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 49 IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN-MQA 107
G IV D K+N L GF + + + + NII S+IIVN +
Sbjct: 89 FGNKIVDTWDKKVNAWPLDEGFIDYVDSSYGKENEENNLYTANII---ANSKIIVNEKEI 145
Query: 108 DIPNIEPEIL 117
D+ I P++L
Sbjct: 146 DLSIISPDLL 155
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 108 DIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVK 151
D+P + E+L V+ L NPI G + T+ D P I++
Sbjct: 96 DVP-VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQ 138
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 207 QRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYK 258
Q E L+++R L + V+ + V N+++ +R+ +P+D +YK
Sbjct: 254 QYEMLQKMRCLGFPVNNGVRQANTFHGIVSYYNEMKSIRSTLPYDIDGLVYK 305
>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 469
Score = 23.1 bits (48), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 76 HTSHQSGSDRIFEALN 91
H QSGSDRI +++N
Sbjct: 292 HLPVQSGSDRILKSMN 307
>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 254
Score = 22.7 bits (47), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 85 RIFEALNIIDSDKKSQIIVNMQA--DIPNIEPEILASVLLPLQNPIVDIGTLG 135
R+ A I ++D+K II+NM+ + NI I L L N ++ I T+
Sbjct: 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170
>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 449
Score = 22.7 bits (47), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 220 RMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHKGLYKKI 260
R + + I+Q N + + +RT + H H KG+Y +
Sbjct: 3 RSKYFLPILQENPRDAEIASHKLMLRTGMIHQHSKGIYSWL 43
>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 301
Score = 22.7 bits (47), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 121 LLPLQNPIVDIGTLGTRIHGSTDPDD-----PNIVKI 152
++PL V IG G + DPD+ PN++ I
Sbjct: 245 IVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINI 281
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,885
Number of Sequences: 1233
Number of extensions: 6575
Number of successful extensions: 23
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 11
length of query: 268
length of database: 328,796
effective HSP length: 72
effective length of query: 196
effective length of database: 240,020
effective search space: 47043920
effective search space used: 47043920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)