HHsearch alignment for GI: 254780766 and conserved domain: PRK11247
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional.
Probab=98.71 E-value=1.3e-07 Score=68.79 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=66.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 132 ~~LSGGqkQRvaiAraL~---------~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TIi~vTHdl~ea~~laD 202 (257)
T PRK11247 132 AALSGGQKQRVALARALI---------HRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD 202 (257)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 448999999999999984---------59999998098765799999999999999999609899998879999999699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 203 R--I~vm~~G~Iv~ 214 (257)
T PRK11247 203 R--VLLIEEGKIGL 214 (257)
T ss_pred E--EEEEECCEEEE
T ss_conf 9--99998999999