HHsearch alignment for GI: 254780766 and conserved domain: PRK11308
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional.
Probab=97.99 E-value=7.1e-05 Score=51.03 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=63.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHCC
Q ss_conf 12205899999999999999999870899789980122015989999999997417----98099980696785432126
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 154 eLSGGq~QRv~IArAL~---------~~P~lLi~DEPTsaLD~~~q~~Il~ll~~l~~~~~~t~l~ITHDl~~v~~iaDr 224 (327)
T PRK11308 154 MFSGGQRQRIAIARALM---------LDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADD 224 (327)
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE
T ss_conf 47999999999999984---------289899984786546999999999999999970097699986989999986998
Q ss_pred EEEEEECCCEEEE
Q ss_conf 0079972896895
Q gi|254780766|r 362 AKFMRISNHQALC 374 (375)
Q Consensus 362 ~~~~~i~~g~~~~ 374 (375)
T Consensus 225 --i~VMy~G~IVE 235 (327)
T PRK11308 225 --VMVMYLGRCVE 235 (327)
T ss_pred --EEEEECCEEEE
T ss_conf --99998988999