HHsearch alignment for GI: 254780766 and conserved domain: PRK13537
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=98.73 E-value=1.2e-07 Score=69.01 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 134 ~~~lSgG~kqrl~ia~al~---------~~P~lliLDEPT~GLDp~~r~~i~~~i~~l~~~G~TillttH~l~E~e~lcD 204 (304)
T PRK13537 134 VGELSGGMKRRLTLARALV---------NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCD 204 (304)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 6679999999999999983---------7999999938866789999999999999999689999998884899998699
Q ss_pred CEEEEEECCCEEEEC
Q ss_conf 600799728968959
Q gi|254780766|r 361 TAKFMRISNHQALCI 375 (375)
Q Consensus 361 ~~~~~~i~~g~~~~~ 375 (375)
T Consensus 205 r--v~ii~~G~iva~ 217 (304)
T PRK13537 205 R--LCVIEEGRKIAE 217 (304)
T ss_pred E--EEEEECCEEEEE
T ss_conf 9--999989999997