HHsearch alignment for GI: 254780766 and conserved domain: PTZ00265
>PTZ00265 multidrug resistance protein (mdr1); Provisional.
Probab=98.29 E-value=8.4e-05 Score=50.56 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=48.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHCC
Q ss_conf 31220589999999999999999987089978998012201598999999999741---798099980696785432126
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~---~~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 1358 ~nLSgGQKQrIaIARAL-----L----R~pkILLLDEATSaLD~eSE~~VQ~aL~~~~~~~~rTvI~IAH--RLsTI~~a 1426 (1467)
T PTZ00265 1358 KSLSGGQKQRIAIARAL-----L----REPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH--RIASIKRS 1426 (1467)
T ss_pred CCCCHHHHHHHHHHHHH-----H----HCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEHH--HHHHHHHC
T ss_conf 33699999999999999-----7----6499899968020589899999999999988528998998564--27789968
Q ss_pred EEEEEECC----CEEE
Q ss_conf 00799728----9689
Q gi|254780766|r 362 AKFMRISN----HQAL 373 (375)
Q Consensus 362 ~~~~~i~~----g~~~ 373 (375)
T Consensus 1427 D~I~Vld~g~~~G~iV 1442 (1467)
T PTZ00265 1427 DKIVVFNNPDRNGSFV 1442 (1467)
T ss_pred CEEEEEECCCCCCCEE
T ss_conf 9899994787688789