HHsearch alignment for GI: 254780766 and conserved domain: TIGR00611
>TIGR00611 recf DNA replication and repair protein RecF; InterPro: IPR001238 All proteins in this family, including recF, for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. RecF is involved in DNA metabolism and is required for recombinational DNA repair and for induction of the SOS response , . ; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=598.23 Aligned_cols=364 Identities=27% Similarity=0.385 Sum_probs=321.4
Q ss_pred EEEEEEE---------EECCCCHHHEEEE---CCCCEE-EEECCCCCCH--HHHHHHHHHHCCCCCCCCCCHHHHHHCCC
Q ss_conf 1899999---------9223254553673---279879-9986899864--44899999972886666787368874898
Q gi|254780766|r 5 IKIKFLN---------ISEFRNYASLRLV---FDAQHT-IFVGDNGVGK--TNILEAISFLSPGRGFRRASYADVTRIGS 69 (375)
Q Consensus 5 M~i~~l~---------i~nFR~~~~~~i~---f~~~~n-~i~G~NG~GK--T~iLEAI~~l~~gksfR~~~~~~li~~~~ 69 (375)
T Consensus 1 M~~~~L~rPCrCGCkPl~~FRNy~~v~L~rCvl~p~~Nq~~~G~NgqGKrPTnllEAiy~L~~~rShR~~~~~~lIr~~~ 80 (399)
T TIGR00611 1 MYLSRLERPCRCGCKPLKDFRNYDEVDLERCVLSPGVNQVFVGPNGQGKRPTNLLEAIYYLALGRSHRTSRDKELIRFGA 80 (399)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 92300177555677568887786450100201178874488767889864078999999987444354420563011278
Q ss_pred CCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCC
Q ss_conf 320589888628532002667530024663332112577433--321012333452021001100126872341210100
Q gi|254780766|r 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147 (375)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~--~~~~l~~~l~~v~~~p~~~~li~~~p~~RR~flD~~ 147 (375)
T Consensus 81 ~~~-~~~g~~~~~~~~~~~~l~~~~--~~k~~~~~~n~~~~~g~k~~dl~g~L~~~LfaPEdL~Lv~G~P~~RRrFLD~~ 157 (399)
T TIGR00611 81 EAA-VIEGRVSKEDREVTIDLEILL--KKKGKKAKVNILGQDGNKLSDLAGLLPVVLFAPEDLTLVKGSPSVRRRFLDWE 157 (399)
T ss_pred CEE-EEEEEEEECCCEEEEEEEEEE--ECCCCEEEEEECCCCCCHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 617-999999808717898765873--00366258741655553099898741203207887210158865678883158
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHHHCC-----CCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01358-467788877776666679886305-----6543---21002456532799999999999999999999999853
Q gi|254780766|r 148 VFAID-PRHRRRMIDFERLMRGRNRLLTEG-----YFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218 (375)
Q Consensus 148 i~~~~-~~y~~~l~~y~K~LkqRN~lLk~~-----~~d~---~~l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~ 218 (375)
T Consensus 158 l~~~~~~~~~~~~s~y~r~LkQRNa~Lk~~~~~~~~~D~~~~~~L~vwD~~La~~g~~v~~~R~~~~~~L~~~~~~~~~~ 237 (399)
T TIGR00611 158 LFQVSRPVYLSAWSDYQRVLKQRNAALKQAQGARQQGDRSVLSTLEVWDSQLAELGAKVSAKRAEFIEKLEPEAQKAHQL 237 (399)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77623157899998642699988779987544431057557878644128999999999999999999988999999997
Q ss_pred CCCCCEEEEECCCC-----CCCCCCCHHHHHHHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHH
Q ss_conf 16430112201566-----6765589678888765455311100000000025732001100124551023312205899
Q gi|254780766|r 219 ENFPHIKLSLTGFL-----DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293 (375)
Q Consensus 219 ~~~~~~~~~l~~~~-----~~~~~~~~~~~~e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk 293 (375)
T Consensus 238 ~l~~~~~~~~~y~~s~e~~~~~~~~~~~~~~~~~~~~L~~~~~~d~~rg~T~~GPHRdDl~~~~n~~pv-~~~~S~Gq~~ 316 (399)
T TIGR00611 238 LLPELESLSLFYRGSLEVIDADEAETLWDIETDYAEALARNFERDLERGYTLVGPHRDDLRFRLNGLPV-EDFASQGQQR 316 (399)
T ss_pred HCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-HHHCCHHHHH
T ss_conf 425202345543012013327871256889999999999874668866899648734777754158584-3430054789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--HHCCEEEEEECC--
Q ss_conf 9999999999999998708997899801220159899999999974179809998069678543--212600799728--
Q gi|254780766|r 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--LNETAKFMRISN-- 369 (375)
Q Consensus 294 ~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~~~Qv~iTt~~~~~~~~--~~~~~~~~~i~~-- 369 (375)
T Consensus 317 ~l~~aLrLA~~~ll~~~~~e~PilLlDDv~SELD~~Rr~~L~~~~~~~~~QVfvTa~~~d~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00611 317 SLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRALAETLQSLGEQVFVTAISLDHLKEMQDANRVTIALVSVEA 396 (399)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHCCCCEEEEECCC
T ss_conf 99999999899999984689842644252322607899999999971696699996242012000010034023564267
Q ss_pred CEE
Q ss_conf 968
Q gi|254780766|r 370 HQA 372 (375)
Q Consensus 370 g~~ 372 (375)
T Consensus 397 G~~ 399 (399)
T TIGR00611 397 GTI 399 (399)
T ss_pred CCC
T ss_conf 879