HHsearch alignment for GI: 254780766 and conserved domain: TIGR03185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.77 E-value=2e-16 Score=126.38 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHH-HHHHCCCCEEEEECCHH
Q ss_conf 245510233122058999999999999999998708997899801220159899999999-97417980999806967
Q gi|254780766|r 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKS 353 (375)
Q Consensus 277 ~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~-~l~~~~~Qv~iTt~~~~ 353 (375)
T Consensus 542 ~~g~~i~~~~LSaGEkQilalsfi~aL~---~~Sg~~~Pi-iIDTPlGrLD~~hR~~li~~y~P~~s~QVIlLsTdtE 615 (650)
T TIGR03185 542 NNGDHVPKERLSAGEKQILAIALLWALA---RVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEE 615 (650)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHCCCCCCE-EEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 8999888767897899999999999999---860898988-9848742017899999999848540573899725154