HHsearch alignment for GI: 254780766 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.34 E-value=5.1e-06 Score=58.47 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHC
Q ss_conf 31220589999999999999999987089978998012201598999999999741----79809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~----~~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 426 ~~LSGGq~QRvaiAraL~---------~~P~vlilDEPT~glD~~~~~~i~~~l~~~~~~~g~tvi~iShDl~~~~~~~d 496 (520)
T TIGR03269 426 DELSEGERHRVALAQVLI---------KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHCCHHHHHHHHHHHHHH---------HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 118999999999999999---------79898999386011338999999999999998329899997788899998699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 497 R--v~vm~~G~iv~ 508 (520)
T TIGR03269 497 R--AALMRDGKIVK 508 (520)
T ss_pred E--EEEEECCEEEE
T ss_conf 9--99997999999