HHsearch alignment for GI: 254780766 and conserved domain: TIGR03269

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.34  E-value=5.1e-06  Score=58.47  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHC
Q ss_conf             31220589999999999999999987089978998012201598999999999741----79809998069678543212
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFDSLNE  360 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~----~~~Qv~iTt~~~~~~~~~~~  360 (375)
T Consensus       426 ~~LSGGq~QRvaiAraL~---------~~P~vlilDEPT~glD~~~~~~i~~~l~~~~~~~g~tvi~iShDl~~~~~~~d  496 (520)
T TIGR03269       426 DELSEGERHRVALAQVLI---------KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD  496 (520)
T ss_pred             HHCCHHHHHHHHHHHHHH---------HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf             118999999999999999---------79898999386011338999999999999998329899997788899998699


Q ss_pred             CEEEEEECCCEEEE
Q ss_conf             60079972896895
Q gi|254780766|r  361 TAKFMRISNHQALC  374 (375)
Q Consensus       361 ~~~~~~i~~g~~~~  374 (375)
T Consensus       497 R--v~vm~~G~iv~  508 (520)
T TIGR03269       497 R--AALMRDGKIVK  508 (520)
T ss_pred             E--EEEEECCEEEE
T ss_conf             9--99997999999