HHsearch alignment for GI: 254780766 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.23 E-value=1.1e-05 Score=56.26 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHC
Q ss_conf 31220589999999999999999987089978998012201598999999999741----79809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~----~~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 167 ~~LSgGqkQrv~IA~aL~---------~~P~lLilDEPTa~LD~~~~~~l~~~l~~l~~~~g~tii~isH~l~~~~~~~D 237 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLA---------KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 559999978899999984---------59989997076335799999999999999999839659997486999998699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 238 r--v~vl~~G~iv~ 249 (520)
T TIGR03269 238 K--AIWLENGEIKE 249 (520)
T ss_pred E--EEEEECCEEEE
T ss_conf 9--99998998999