HHsearch alignment for GI: 254780766 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.34 E-value=1.3e-05 Score=55.85 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=60.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 600 ~~LSgGqrQri~lARAl~---------~~p~ililDE~ts~LD~~~e~~i~~~l~~~~~~~T~i~itHrls~i~~---aD 667 (694)
T TIGR03375 600 RSLSGGQRQAVALARALL---------RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL---VD 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH---CC
T ss_conf 946899999999999995---------799989997875688999999999999986699989998168999984---99
Q ss_pred EEEEECCCEEEE
Q ss_conf 079972896895
Q gi|254780766|r 363 KFMRISNHQALC 374 (375)
Q Consensus 363 ~~~~i~~g~~~~ 374 (375)
T Consensus 668 ~i~vl~~G~iv~ 679 (694)
T TIGR03375 668 RIIVMDNGRIVA 679 (694)
T ss_pred EEEEEECCEEEE
T ss_conf 999998988999