HHsearch alignment for GI: 254780766 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.67 E-value=2.1e-07 Score=67.52 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 132 ~~LS~G~kqrl~la~aL~---------~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~~TillssH~l~e~e~lcdr- 201 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALI---------HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR- 201 (301)
T ss_pred HHCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCE-
T ss_conf 677998844599889870---------7998999948866789899999999999875999999987858999986999-
Q ss_pred EEEEECCCEEEEC
Q ss_conf 0799728968959
Q gi|254780766|r 363 KFMRISNHQALCI 375 (375)
Q Consensus 363 ~~~~i~~g~~~~~ 375 (375)
T Consensus 202 -i~ii~~G~iv~~ 213 (301)
T TIGR03522 202 -VIIINKGKIVAD 213 (301)
T ss_pred -EEEEECCEEEEE
T ss_conf -999989999997