HHsearch alignment for GI: 254780766 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.45 E-value=1.4e-11 Score=94.75 Aligned_cols=80 Identities=24% Similarity=0.225 Sum_probs=66.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 131 ~~~LSgG~~qrv~iAraL~---------~~P~illlDEPt~GLDp~~~~~i~~~i~~l~~~g~tili~tH~l~~~~~~~d 201 (232)
T cd03218 131 ASSLSGGERRRVEIARALA---------TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 2559999999999999996---------6999999889856889999999999999999589999999283999998699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 202 r--v~vl~~G~ii~ 213 (232)
T cd03218 202 R--AYIIYEGKVLA 213 (232)
T ss_pred E--EEEEECCEEEE
T ss_conf 9--99997998999