HHsearch alignment for GI: 254780766 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.21 E-value=1.1e-05 Score=56.31 Aligned_cols=73 Identities=26% Similarity=0.280 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHCCE
Q ss_conf 2205899999999999999999870899789980122015989999999997417----980999806967854321260
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 72 LSGGqrQRv~iAral~---------~~p~lllLDEPts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsHdl~~a~~~aDr- 141 (177)
T cd03222 72 LSGGELQRVAIAAALL---------RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR- 141 (177)
T ss_pred CCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE-
T ss_conf 7989999999999982---------399999974886538999999999999999996597799985889999986999-
Q ss_pred EEEEECCC
Q ss_conf 07997289
Q gi|254780766|r 363 KFMRISNH 370 (375)
Q Consensus 363 ~~~~i~~g 370 (375)
T Consensus 142 -I~vl~g~ 148 (177)
T cd03222 142 -IHVFEGE 148 (177)
T ss_pred -EEEEECC
T ss_conf -9999389