HHsearch alignment for GI: 254780766 and conserved domain: cd03223

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.19  E-value=1.4e-05  Score=55.55  Aligned_cols=71  Identities=21%  Similarity=0.455  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCEEEEE
Q ss_conf             22058999999999999999998708997899801220159899999999974179809998069678543212600799
Q gi|254780766|r  287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR  366 (375)
Q Consensus       287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~~~Qv~iTt~~~~~~~~~~~~~~~~~  366 (375)
T Consensus        92 LSGGqkQRvalARal~---------~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~~Tvi~VtH~~~~~~-~aDr--vl~  159 (166)
T cd03223          92 LSGGEQQRLAFARLLL---------HKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-FHDR--VLD  159 (166)
T ss_pred             CCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH-CCCE--EEE
T ss_conf             8999999999999996---------499999975853328999999999999977998999943469997-2999--999


Q ss_pred             ECC
Q ss_conf             728
Q gi|254780766|r  367 ISN  369 (375)
Q Consensus       367 i~~  369 (375)
T Consensus       160 Ldg  162 (166)
T cd03223         160 LDG  162 (166)
T ss_pred             EEC
T ss_conf             918