HHsearch alignment for GI: 254780766 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.19 E-value=1.4e-05 Score=55.55 Aligned_cols=71 Identities=21% Similarity=0.455 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCEEEEE
Q ss_conf 22058999999999999999998708997899801220159899999999974179809998069678543212600799
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~~~Qv~iTt~~~~~~~~~~~~~~~~~ 366 (375)
T Consensus 92 LSGGqkQRvalARal~---------~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~~Tvi~VtH~~~~~~-~aDr--vl~ 159 (166)
T cd03223 92 LSGGEQQRLAFARLLL---------HKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-FHDR--VLD 159 (166)
T ss_pred CCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH-CCCE--EEE
T ss_conf 8999999999999996---------499999975853328999999999999977998999943469997-2999--999
Q ss_pred ECC
Q ss_conf 728
Q gi|254780766|r 367 ISN 369 (375)
Q Consensus 367 i~~ 369 (375)
T Consensus 160 Ldg 162 (166)
T cd03223 160 LDG 162 (166)
T ss_pred EEC
T ss_conf 918