HHsearch alignment for GI: 254780766 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.46 E-value=1.8e-11 Score=94.01 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=66.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCC
Q ss_conf 312205899999999999999999870899789980122015989999999997417---98099980696785432126
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 131 ~~LSgG~~Qrv~iAraL~---------~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tii~vtHdl~~~~~~~Dr 201 (222)
T cd03224 131 GTLSGGEQQMLAIARALM---------SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE
T ss_conf 448999999999999996---------49999999386547999999999999999995699999990858999996999
Q ss_pred EEEEEECCCEEEE
Q ss_conf 0079972896895
Q gi|254780766|r 362 AKFMRISNHQALC 374 (375)
Q Consensus 362 ~~~~~i~~g~~~~ 374 (375)
T Consensus 202 --v~vl~~G~iv~ 212 (222)
T cd03224 202 --AYVLERGRVVL 212 (222)
T ss_pred --EEEEECCEEEE
T ss_conf --99997999999